1WOVA

Crystal structure of heme oxygenase-2 from synechocystis sp. pcc 6803 in complex with heme
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
249
structure length
244
Chain Sequence
TNLAQKLRYGTQQSHTLAENTAYMKCFLKGIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSLPLDEATINRIVEEANYAFSLNREVMHDLEDLIKAAIGEHTFDLLTRQDRPGSTEGHPITLMVGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 2
publication title Crystal structure of dimeric heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme.
pubmed doi rcsb
source organism Synechocystis sp. pcc 6803
total genus 103
structure length 244
sequence length 249
chains with identical sequence B
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2004-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1wovA01
2GM7A 2ZVUA 3RM5A 4G8UA 4WMHA 2A6BA 1XK1A 4G8WA 4WWJA 3CZYA 1IRMA 4WD4A 1WOVA 1WWMA 2QZCA 1J2CA 1J02A 1OZRA 3BJDA 3HOKA 1WZGA 2Q4XA 4G7PA 1WOWA 1WOXA 3MOOA 1TO9B 1IVJA 4NY7A 3HMLA 4G7LA 1TWNA 4WWZA 3I9TA 4WX0A 4RAJA 1RTWA 1V8XA 2A2OA 3I8RA 4MECA 1WZDA 1OYLA 1IW1A 3TGMA 1WNWA 1S13A 1XK2A 1YAFA 4GPFA 4G7TA 3HNHA 1TYHA 1OZEA 1ULXA 2DY5A 3HLXA 2RGZA 1NI6A 1IW0A 1XJZA 1WZFA 2E7EA 2RD3A 1S8CA 5BTQA 1SK7A 4G7UA 4G98A 2A2MA 3B5PA 1WNXA 1DVEA 3K4FA 4GOHA 2GM8A 1XK3A 1J77A 1P3VA 3OQLA 1YAKA 4GPHA 3B5OA 1TO9A 1P3UA 3NO6A 1UBBA 4FN6A 1VGIA 2Z68A 1WNVA 1TWRA 1OZLA 2Q32A 4GPCA 1UDDA 3IBXA 2QCXA 4LQXA 4G8PA 1OYKA 1DVGA 1T5PA 1WE1A 4G99A 1OTVA 1N3UA 3DDEA 2F2GA 2QPPA 1OTWA 3I9UA 3MVUA 1XK0A 1N45A 1IX3A 1IX4A 1Z72A 1OZWA 1P3TA 1RCWA
chains in the Genus database with same CATH superfamily
2GM7A 2ZVUA 3RM5A 4G8UA 4WMHA 2A6BA 1XK1A 4G8WA 4WWJA 3CZYA 1IRMA 4WD4A 1WOVA 1WWMA 2QZCA 1J2CA 1J02A 1OZRA 3BJDA 3HOKA 1WZGA 2Q4XA 4G7PA 1WOWA 1WOXA 3MOOA 1TO9B 1IVJA 4NY7A 3HMLA 4G7LA 1TWNA 4WWZA 3I9TA 4WX0A 4RAJA 1RTWA 2LCUA 1V8XA 2A2OA 3I8RA 4MECA 1WZDA 1OYLA 1IW1A 3TGMA 1WNWA 1S13A 1XK2A 1YAFA 4GPFA 4G7TA 3HNHA 1TYHA 1OZEA 1ULXA 2DY5A 3HLXA 2RGZA 1NI6A 1IW0A 1XJZA 1WZFA 2E7EA 2RD3A 1S8CA 5BTQA 1SK7A 4G7UA 4G98A 2A2MA 3B5PA 1WNXA 1DVEA 3K4FA 4GOHA 2GM8A 1XK3A 1J77A 1P3VA 3OQLA 1YAKA 4GPHA 3B5OA 1TO9A 1P3UA 3NO6A 1UBBA 4FN6A 1VGIA 2Z68A 1WNVA 1TWRA 1OZLA 2Q32A 4GPCA 1UDDA 3IBXA 2QCXA 4LQXA 4G8PA 1OYKA 1DVGA 1T5PA 1WE1A 4G99A 1OTVA 1N3UA 3DDEA 2F2GA 2QPPA 1OTWA 3I9UA 3MVUA 1XK0A 1N45A 1IX3A 1IX4A 1Z72A 1OZWA 1P3TA 1RCWA
chains in the Genus database with same CATH topology
2GM7A 2ZVUA 3RM5A 4G8UA 4WMHA 2A6BA 1XK1A 4G8WA 4WWJA 3CZYA 1IRMA 4WD4A 1WOVA 1WWMA 2QZCA 1J2CA 1J02A 1OZRA 3BJDA 3HOKA 1WZGA 2Q4XA 4G7PA 1WOWA 1WOXA 3MOOA 1TO9B 1IVJA 4NY7A 3HMLA 4G7LA 1TWNA 4WWZA 3I9TA 4WX0A 4RAJA 1RTWA 1V8XA 2A2OA 3I8RA 4MECA 1WZDA 1OYLA 1IW1A 3TGMA 1WNWA 1S13A 1XK2A 1YAFA 4GPFA 4G7TA 3HNHA 1TYHA 1OZEA 1ULXA 2DY5A 3HLXA 2RGZA 1NI6A 1IW0A 1XJZA 1WZFA 2E7EA 2RD3A 1S8CA 5BTQA 1SK7A 4G7UA 4G98A 2A2MA 3B5PA 1WNXA 1DVEA 3K4FA 4GOHA 2GM8A 1XK3A 1J77A 1P3VA 3OQLA 1YAKA 4GPHA 3B5OA 1TO9A 1P3UA 3NO6A 1UBBA 4FN6A 1VGIA 2Z68A 1WNVA 1TWRA 1OZLA 2Q32A 4GPCA 1UDDA 3IBXA 2QCXA 4LQXA 4G8PA 1OYKA 1DVGA 1T5PA 1WE1A 4G99A 1OTVA 1N3UA 3DDEA 2F2GA 2QPPA 1OTWA 3I9UA 3MVUA 1XK0A 1N45A 1IX3A 1IX4A 1Z72A 1OZWA 1P3TA 1RCWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GM7 A;  2ZVU A;  3RM5 A;  4G8U A;  4WMH A;  2A6B A;  1XK1 A;  4G8W A;  4WWJ A;  3CZY A;  1IRM A;  4WD4 A;  1WOV A;  1WWM A;  2QZC A;  1J2C A;  1J02 A;  1OZR A;  3BJD A;  3HOK A;  1WZG A;  2Q4X A;  4G7P A;  1WOW A;  1WOX A;  3MOO A;  1TO9 B;  1IVJ A;  4NY7 A;  3HML A;  4G7L A;  1TWN A;  4WWZ A;  3I9T A;  4WX0 A;  4RAJ A;  1RTW A;  1V8X A;  2A2O A;  3I8R A;  4MEC A;  1WZD A;  1OYL A;  1IW1 A;  3TGM A;  1WNW A;  1S13 A;  1XK2 A;  1YAF A;  4GPF A;  4G7T A;  3HNH A;  1TYH A;  1OZE A;  1ULX A;  2DY5 A;  3HLX A;  2RGZ A;  1NI6 A;  1IW0 A;  1XJZ A;  1WZF A;  2E7E A;  2RD3 A;  1S8C A;  5BTQ A;  1SK7 A;  4G7U A;  4G98 A;  2A2M A;  3B5P A;  1WNX A;  1DVE A;  3K4F A;  4GOH A;  2GM8 A;  1XK3 A;  1J77 A;  1P3V A;  3OQL A;  1YAK A;  4GPH A;  3B5O A;  1TO9 A;  1P3U A;  3NO6 A;  1UBB A;  4FN6 A;  1VGI A;  2Z68 A;  1WNV A;  1TWR A;  1OZL A;  2Q32 A;  4GPC A;  1UDD A;  3IBX A;  2QCX A;  4LQX A;  4G8P A;  1OYK A;  1DVG A;  1T5P A;  1WE1 A;  4G99 A;  1OTV A;  1N3U A;  3DDE A;  2F2G A;  2QPP A;  1OTW A;  3I9U A;  3MVU A;  1XK0 A;  1N45 A;  1IX3 A;  1IX4 A;  1Z72 A;  1OZW A;  1P3T A;  1RCW A; 
#chains in the Genus database with same CATH topology
 2GM7 A;  2ZVU A;  3RM5 A;  4G8U A;  4WMH A;  2A6B A;  1XK1 A;  4G8W A;  4WWJ A;  3CZY A;  1IRM A;  4WD4 A;  1WOV A;  1WWM A;  2QZC A;  1J2C A;  1J02 A;  1OZR A;  3BJD A;  3HOK A;  1WZG A;  2Q4X A;  4G7P A;  1WOW A;  1WOX A;  3MOO A;  1TO9 B;  1IVJ A;  4NY7 A;  3HML A;  4G7L A;  1TWN A;  4WWZ A;  3I9T A;  4WX0 A;  4RAJ A;  1RTW A;  2LCU A;  1V8X A;  2A2O A;  3I8R A;  4MEC A;  1WZD A;  1OYL A;  1IW1 A;  3TGM A;  1WNW A;  1S13 A;  1XK2 A;  1YAF A;  4GPF A;  4G7T A;  3HNH A;  1TYH A;  1OZE A;  1ULX A;  2DY5 A;  3HLX A;  2RGZ A;  1NI6 A;  1IW0 A;  1XJZ A;  1WZF A;  2E7E A;  2RD3 A;  1S8C A;  5BTQ A;  1SK7 A;  4G7U A;  4G98 A;  2A2M A;  3B5P A;  1WNX A;  1DVE A;  3K4F A;  4GOH A;  2GM8 A;  1XK3 A;  1J77 A;  1P3V A;  3OQL A;  1YAK A;  4GPH A;  3B5O A;  1TO9 A;  1P3U A;  3NO6 A;  1UBB A;  4FN6 A;  1VGI A;  2Z68 A;  1WNV A;  1TWR A;  1OZL A;  2Q32 A;  4GPC A;  1UDD A;  3IBX A;  2QCX A;  4LQX A;  4G8P A;  1OYK A;  1DVG A;  1T5P A;  1WE1 A;  4G99 A;  1OTV A;  1N3U A;  3DDE A;  2F2G A;  2QPP A;  1OTW A;  3I9U A;  3MVU A;  1XK0 A;  1N45 A;  1IX3 A;  1IX4 A;  1Z72 A;  1OZW A;  1P3T A;  1RCW A; 
#chains in the Genus database with same CATH homology
 2GM7 A;  2ZVU A;  3RM5 A;  4G8U A;  4WMH A;  2A6B A;  1XK1 A;  4G8W A;  4WWJ A;  3CZY A;  1IRM A;  4WD4 A;  1WOV A;  1WWM A;  2QZC A;  1J2C A;  1J02 A;  1OZR A;  3BJD A;  3HOK A;  1WZG A;  2Q4X A;  4G7P A;  1WOW A;  1WOX A;  3MOO A;  1TO9 B;  1IVJ A;  4NY7 A;  3HML A;  4G7L A;  1TWN A;  4WWZ A;  3I9T A;  4WX0 A;  4RAJ A;  1RTW A;  1V8X A;  2A2O A;  3I8R A;  4MEC A;  1WZD A;  1OYL A;  1IW1 A;  3TGM A;  1WNW A;  1S13 A;  1XK2 A;  1YAF A;  4GPF A;  4G7T A;  3HNH A;  1TYH A;  1OZE A;  1ULX A;  2DY5 A;  3HLX A;  2RGZ A;  1NI6 A;  1IW0 A;  1XJZ A;  1WZF A;  2E7E A;  2RD3 A;  1S8C A;  5BTQ A;  1SK7 A;  4G7U A;  4G98 A;  2A2M A;  3B5P A;  1WNX A;  1DVE A;  3K4F A;  4GOH A;  2GM8 A;  1XK3 A;  1J77 A;  1P3V A;  3OQL A;  1YAK A;  4GPH A;  3B5O A;  1TO9 A;  1P3U A;  3NO6 A;  1UBB A;  4FN6 A;  1VGI A;  2Z68 A;  1WNV A;  1TWR A;  1OZL A;  2Q32 A;  4GPC A;  1UDD A;  3IBX A;  2QCX A;  4LQX A;  4G8P A;  1OYK A;  1DVG A;  1T5P A;  1WE1 A;  4G99 A;  1OTV A;  1N3U A;  3DDE A;  2F2G A;  2QPP A;  1OTW A;  3I9U A;  3MVU A;  1XK0 A;  1N45 A;  1IX3 A;  1IX4 A;  1Z72 A;  1OZW A;  1P3T A;  1RCW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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