1WPPA

Structure of streptococcus gordonii inorganic pyrophosphatase
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
310
structure length
310
Chain Sequence
SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETASPLYMRLEPVGSASSIVYRMFKEHGVAVPKEIAGLMLSGLISDTLLLKSPTTHPTDKVIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
pubmed doi rcsb
source organism Streptococcus gordonii
molecule tags Hydrolase
molecule keywords Probable manganese-dependent inorganic pyrophosphatase
total genus 106
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2004-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1wppA02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1wppA01
1WPPA 2IW4A 1I74A 2EB0A 2QB6A 2QB7A 4PY9A 2QB8A 1K20A 1WPNA 4LS9A 4RPAA 1WPMA 1K23A 3W5WA 2HAWA 2ENXA 3DEVA
chains in the Genus database with same CATH superfamily
2LT2A 2QB8A 1YM5A 3EJXA 5GL3A 4JBDA 5H2GA 3EDNA 1QY9A 4Q60A 4Q2HA 1I74A 1IR6A 2ZXPA 4DUNA 2HAWA 1U1XA 4RPAA 1TM0A 2GKEA 3G7KA 1XUAA 2EB0A 2OTNA 1K23A 1U1VA 3WQZA 2KPTA 3DEVA 4K7GB 3EKMA 5IWEA 1BWZA 2AZPA 3FVEA 1WPPA 2QB7A 2QB6A 1U1WA 2H9FA 2ZXRA 1K20A 1WPNA 5GKXA 2ZXOA 5GL4A 4K7XA 2Q9JA 4J9XA 4JD7A 1T6KA 2GKJA 3G98A 4JCIA 2PW0A 2IW4A 2KW7A 1U0KA 4IK0A 4J9WA 5HA4A 1GQZA 5H2YA 2ENXA 1S7JA 4LG3A 2ZVFA 5GL2A 4PY9A 4OA3A 4JUUA 5ANPA 4LS9A 3IGHX 3W5WA 4K8LA 4LB0A 2Q9HA 3PVHA 1WPMA 3PW9A 5M47A 1W62A 4DWZA 4FC5A 4GL6A 1SDJA 2YMAA 1XUBA 2PVZA 2MPBA 4IJZA 1W61A 3ICJA 3PTJA 1QYAA
chains in the Genus database with same CATH topology
2LT2A 2QB8A 1YM5A 3EJXA 5GL3A 4JBDA 5H2GA 3EDNA 1QY9A 4Q60A 4Q2HA 1I74A 1IR6A 2ZXPA 4DUNA 2HAWA 1U1XA 4RPAA 1TM0A 2GKEA 3G7KA 1XUAA 2EB0A 2OTNA 1K23A 1U1VA 3WQZA 2KPTA 3DEVA 4K7GB 3EKMA 5IWEA 1BWZA 2AZPA 3FVEA 1WPPA 2QB7A 2QB6A 1U1WA 2H9FA 2ZXRA 1K20A 1WPNA 5GKXA 2ZXOA 5GL4A 4K7XA 2Q9JA 4J9XA 4JD7A 1T6KA 2GKJA 3G98A 4JCIA 2PW0A 2IW4A 2KW7A 1U0KA 4IK0A 4J9WA 5HA4A 1GQZA 5H2YA 2ENXA 1S7JA 4LG3A 2ZVFA 5GL2A 4PY9A 4OA3A 4JUUA 5ANPA 4LS9A 3IGHX 3W5WA 4K8LA 4LB0A 2Q9HA 3PVHA 1WPMA 3PW9A 5M47A 1W62A 4DWZA 4FC5A 4GL6A 1SDJA 2YMAA 1XUBA 2PVZA 2MPBA 4IJZA 1W61A 3ICJA 3PTJA 1QYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WPP A;  2IW4 A;  1I74 A;  2EB0 A;  2QB6 A;  2QB7 A;  4PY9 A;  2QB8 A;  1K20 A;  1WPN A;  4LS9 A;  4RPA A;  1WPM A;  1K23 A;  3W5W A;  2HAW A;  2ENX A;  3DEV A; 
#chains in the Genus database with same CATH topology
 2LT2 A;  2QB8 A;  1YM5 A;  3EJX A;  5GL3 A;  4JBD A;  5H2G A;  3EDN A;  1QY9 A;  4Q60 A;  4Q2H A;  1I74 A;  1IR6 A;  2ZXP A;  4DUN A;  2HAW A;  1U1X A;  4RPA A;  1TM0 A;  2GKE A;  3G7K A;  1XUA A;  2EB0 A;  2OTN A;  1K23 A;  1U1V A;  3WQZ A;  2KPT A;  3DEV A;  4K7G B;  3EKM A;  5IWE A;  1BWZ A;  2AZP A;  3FVE A;  1WPP A;  2QB7 A;  2QB6 A;  1U1W A;  2H9F A;  2ZXR A;  1K20 A;  1WPN A;  5GKX A;  2ZXO A;  5GL4 A;  4K7X A;  2Q9J A;  4J9X A;  4JD7 A;  1T6K A;  2GKJ A;  3G98 A;  4JCI A;  2PW0 A;  2IW4 A;  2KW7 A;  1U0K A;  4IK0 A;  4J9W A;  5HA4 A;  1GQZ A;  5H2Y A;  2ENX A;  1S7J A;  4LG3 A;  2ZVF A;  5GL2 A;  4PY9 A;  4OA3 A;  4JUU A;  5ANP A;  4LS9 A;  3IGH X;  3W5W A;  4K8L A;  4LB0 A;  2Q9H A;  3PVH A;  1WPM A;  3PW9 A;  5M47 A;  1W62 A;  4DWZ A;  4FC5 A;  4GL6 A;  1SDJ A;  2YMA A;  1XUB A;  2PVZ A;  2MPB A;  4IJZ A;  1W61 A;  3ICJ A;  3PTJ A;  1QYA A; 
#chains in the Genus database with same CATH homology
 2LT2 A;  2QB8 A;  1YM5 A;  3EJX A;  5GL3 A;  4JBD A;  5H2G A;  3EDN A;  1QY9 A;  4Q60 A;  4Q2H A;  1I74 A;  1IR6 A;  2ZXP A;  4DUN A;  2HAW A;  1U1X A;  4RPA A;  1TM0 A;  2GKE A;  3G7K A;  1XUA A;  2EB0 A;  2OTN A;  1K23 A;  1U1V A;  3WQZ A;  2KPT A;  3DEV A;  4K7G B;  3EKM A;  5IWE A;  1BWZ A;  2AZP A;  3FVE A;  1WPP A;  2QB7 A;  2QB6 A;  1U1W A;  2H9F A;  2ZXR A;  1K20 A;  1WPN A;  5GKX A;  2ZXO A;  5GL4 A;  4K7X A;  2Q9J A;  4J9X A;  4JD7 A;  1T6K A;  2GKJ A;  3G98 A;  4JCI A;  2PW0 A;  2IW4 A;  2KW7 A;  1U0K A;  4IK0 A;  4J9W A;  5HA4 A;  1GQZ A;  5H2Y A;  2ENX A;  1S7J A;  4LG3 A;  2ZVF A;  5GL2 A;  4PY9 A;  4OA3 A;  4JUU A;  5ANP A;  4LS9 A;  3IGH X;  3W5W A;  4K8L A;  4LB0 A;  2Q9H A;  3PVH A;  1WPM A;  3PW9 A;  5M47 A;  1W62 A;  4DWZ A;  4FC5 A;  4GL6 A;  1SDJ A;  2YMA A;  1XUB A;  2PVZ A;  2MPB A;  4IJZ A;  1W61 A;  3ICJ A;  3PTJ A;  1QYA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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