1WPPA

Structure of streptococcus gordonii inorganic pyrophosphatase
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
310
structure length
310
Chain Sequence
SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETASPLYMRLEPVGSASSIVYRMFKEHGVAVPKEIAGLMLSGLISDTLLLKSPTTHPTDKVIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
pubmed doi rcsb
source organism Streptococcus gordonii
molecule tags Hydrolase
molecule keywords Probable manganese-dependent inorganic pyrophosphatase
total genus 106
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2004-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1wppA02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1wppA01
1K20A 2IW4A 3DEVA 2EB0A 1K23A 4LS9A 1I74A 2QB7A 3W5WA 2HAWA 1WPPA 2QB6A 4PY9A 1WPMA 4RPAA 2QB8A 1WPNA 2ENXA
chains in the Genus database with same CATH superfamily
2MPBA 4RPAA 1WPNA 2GKJA 3DEVA 1K23A 4J9WA 4LS9A 5M47A 1SDJA 2LT2A 4IK0A 2PVZA 4JD7A 2AZPA 3WQZA 3ICJA 3EDNA 3PTJA 1TM0A 3FVEA 1YM5A 4JCIA 4Q60A 4GL6A 2QB6A 1GQZA 2ENXA 2ZXRA 2Q9JA 4K8LA 2H9FA 3G98A 5ANPA 1U1WA 1BWZA 3G7KA 1XUBA 3PW9A 5GL2A 5GKXA 1QY9A 4PY9A 1WPMA 4Q2HA 1K20A 5GL3A 5IWEA 2Q9HA 1S7JA 5H2GA 1T6KA 4FC5A 5GL4A 2ZVFA 3EKMA 4LB0A 4DWZA 1U1VA 2PW0A 3EJXA 5H2YA 1W62A 1U0KA 1I74A 3W5WA 4JBDA 1QYAA 2GKEA 2KPTA 4K7XA 4LG3A 2IW4A 1XUAA 1WPPA 4J9XA 5HA4A 3PVHA 4IJZA 2ZXPA 4JUUA 2EB0A 2QB7A 4OA3A 1U1XA 4K7GB 2QB8A 2YMAA 1IR6A 3IGHX 2KW7A 2ZXOA 1W61A 2HAWA 2OTNA 4DUNA
chains in the Genus database with same CATH topology
2MPBA 4RPAA 1WPNA 2GKJA 3DEVA 1K23A 4J9WA 4LS9A 5M47A 1SDJA 2LT2A 4IK0A 2PVZA 4JD7A 2AZPA 3WQZA 3ICJA 3EDNA 3PTJA 1TM0A 3FVEA 1YM5A 4JCIA 4Q60A 4GL6A 2QB6A 1GQZA 2ENXA 2ZXRA 2Q9JA 4K8LA 2H9FA 3G98A 5ANPA 1U1WA 1BWZA 3G7KA 1XUBA 3PW9A 5GL2A 5GKXA 1QY9A 4PY9A 1WPMA 4Q2HA 1K20A 5GL3A 5IWEA 2Q9HA 1S7JA 5H2GA 1T6KA 4FC5A 5GL4A 2ZVFA 3EKMA 4LB0A 4DWZA 1U1VA 2PW0A 3EJXA 5H2YA 1W62A 1U0KA 1I74A 3W5WA 4JBDA 1QYAA 2GKEA 2KPTA 4K7XA 4LG3A 2IW4A 1XUAA 1WPPA 4J9XA 5HA4A 3PVHA 4IJZA 2ZXPA 4JUUA 2EB0A 2QB7A 4OA3A 1U1XA 4K7GB 2QB8A 2YMAA 1IR6A 3IGHX 2KW7A 2ZXOA 1W61A 2HAWA 2OTNA 4DUNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K20 A;  2IW4 A;  3DEV A;  2EB0 A;  1K23 A;  4LS9 A;  1I74 A;  2QB7 A;  3W5W A;  2HAW A;  1WPP A;  2QB6 A;  4PY9 A;  1WPM A;  4RPA A;  2QB8 A;  1WPN A;  2ENX A; 
#chains in the Genus database with same CATH topology
 2MPB A;  4RPA A;  1WPN A;  2GKJ A;  3DEV A;  1K23 A;  4J9W A;  4LS9 A;  5M47 A;  1SDJ A;  2LT2 A;  4IK0 A;  2PVZ A;  4JD7 A;  2AZP A;  3WQZ A;  3ICJ A;  3EDN A;  3PTJ A;  1TM0 A;  3FVE A;  1YM5 A;  4JCI A;  4Q60 A;  4GL6 A;  2QB6 A;  1GQZ A;  2ENX A;  2ZXR A;  2Q9J A;  4K8L A;  2H9F A;  3G98 A;  5ANP A;  1U1W A;  1BWZ A;  3G7K A;  1XUB A;  3PW9 A;  5GL2 A;  5GKX A;  1QY9 A;  4PY9 A;  1WPM A;  4Q2H A;  1K20 A;  5GL3 A;  5IWE A;  2Q9H A;  1S7J A;  5H2G A;  1T6K A;  4FC5 A;  5GL4 A;  2ZVF A;  3EKM A;  4LB0 A;  4DWZ A;  1U1V A;  2PW0 A;  3EJX A;  5H2Y A;  1W62 A;  1U0K A;  1I74 A;  3W5W A;  4JBD A;  1QYA A;  2GKE A;  2KPT A;  4K7X A;  4LG3 A;  2IW4 A;  1XUA A;  1WPP A;  4J9X A;  5HA4 A;  3PVH A;  4IJZ A;  2ZXP A;  4JUU A;  2EB0 A;  2QB7 A;  4OA3 A;  1U1X A;  4K7G B;  2QB8 A;  2YMA A;  1IR6 A;  3IGH X;  2KW7 A;  2ZXO A;  1W61 A;  2HAW A;  2OTN A;  4DUN A; 
#chains in the Genus database with same CATH homology
 2MPB A;  4RPA A;  1WPN A;  2GKJ A;  3DEV A;  1K23 A;  4J9W A;  4LS9 A;  5M47 A;  1SDJ A;  2LT2 A;  4IK0 A;  2PVZ A;  4JD7 A;  2AZP A;  3WQZ A;  3ICJ A;  3EDN A;  3PTJ A;  1TM0 A;  3FVE A;  1YM5 A;  4JCI A;  4Q60 A;  4GL6 A;  2QB6 A;  1GQZ A;  2ENX A;  2ZXR A;  2Q9J A;  4K8L A;  2H9F A;  3G98 A;  5ANP A;  1U1W A;  1BWZ A;  3G7K A;  1XUB A;  3PW9 A;  5GL2 A;  5GKX A;  1QY9 A;  4PY9 A;  1WPM A;  4Q2H A;  1K20 A;  5GL3 A;  5IWE A;  2Q9H A;  1S7J A;  5H2G A;  1T6K A;  4FC5 A;  5GL4 A;  2ZVF A;  3EKM A;  4LB0 A;  4DWZ A;  1U1V A;  2PW0 A;  3EJX A;  5H2Y A;  1W62 A;  1U0K A;  1I74 A;  3W5W A;  4JBD A;  1QYA A;  2GKE A;  2KPT A;  4K7X A;  4LG3 A;  2IW4 A;  1XUA A;  1WPP A;  4J9X A;  5HA4 A;  3PVH A;  4IJZ A;  2ZXP A;  4JUU A;  2EB0 A;  2QB7 A;  4OA3 A;  1U1X A;  4K7G B;  2QB8 A;  2YMA A;  1IR6 A;  3IGH X;  2KW7 A;  2ZXO A;  1W61 A;  2HAW A;  2OTN A;  4DUN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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