1WPWA

Crystal structure of ipmdh from sulfolobus tokodaii
Total Genus 113
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
336
structure length
336
Chain Sequence
GFTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title Crystal Structure of IPMDH from Sulfolobus tokodaii
rcsb
source organism Sulfolobus tokodaii
total genus 113
structure length 336
sequence length 336
chains with identical sequence B
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2004-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1wpwA00
2QFVA 3ASJA 1IKAA 1WPWA 5GRHA 3VL6A 3R8WA 5L57A 1GC8A 1DR8A 1IPDA 5GRFA 4AJCA 3UDOA 3VMJA 1PTMA 2Y41A 4AJRA 3LXYA 4Y1PA 3WZWA 1IDDA 3WZVA 1G2UA 3UF6A 2UXQA 4IWHA 1CW4A 2G4OA 2ZTWA 1VLCA 2AYQA 3VMLA 5HN6A 5GRIB 1XGVA 5GRFB 2Y3ZA 3FMXX 1LWDA 5I95A 4L03A 1GROA 3TY3A 1IDFA 1DPZA 1PS6A 5J34A 3WZYA 1YXOA 4ICDA 3INMA 4YB4A 1XABA 4AOVA 5L58A 3BLXA 3TNGA 3MARA 3VL2A 4I3LA 1TYOA 5GRIA 4F7IA 5J33A 4I3KA 5GREB 1T09A 3FLKA 1P8FA 1AI2A 1XADA 1W0DA 4WUOA 4XS3A 1DR0A 1IDMA 1IDEA 1V5BA 4JA8A 3BLXB 1R8KA 2IV0A 5HN4A 2Y40A 7ICDA 1OSIA 1HQSA 1ZORA 1CM7A 5GREA 5HN3A 2D1CA 3MAPA 2D4VA 3WZXA 1VI1A 4AOYA 5LGEA 2Y42A 4XXVA 4L06A 2E5MA 1T0LA 1X0LA 3VKZA 4AJAA 4UMXA 3BLVB 1HJ6A 4ATYA 1CNZA 4XRXA 5DE1A 1IDCA 5K11A 1WALA 5GRLA 2E0CA 4L04A 1AI3A 4AJBA 3AH3A 2QFXA 4BNPA 4JQPA 4UMYA 3VL4A 1PS7A 1SJSA 1A05A 2UXRA 3DMSA 4KZOA 3VL7A 6ICDA 3VMKA 1HEXA 4AOUA 2QFWA 5GRLB 3U9EA 3VL3A 4AJ3A 3UDUA 1GRPA 3BLVA 2QFYA 9ICDA 4P69C 5ICDA 8ICDA 1XACA 1XAAA 3LCBC 1GC9A 1XKDA 3U1HA 3MASB 5I96A 1V53A 1PB3A 4AJSA 3TSNA 1CW1A 3TY4A 1BL5A 1ISOA 1PB1A 2HI1A 5GRHB 5K10A 1CW7A 5HN5A 3US8A 4HCXA 3ICDA 2DHTA 1YCOA 1OSJA 5J32A 3MASA 1U7NA 1V94A
chains in the Genus database with same CATH superfamily
2QFVA 3ASJA 1IKAA 1WPWA 5GRHA 3VL6A 3R8WA 5L57A 1GC8A 1DR8A 1IPDA 5GRFA 4AJCA 3UDOA 3VMJA 1PTMA 2Y41A 4AJRA 3LXYA 4Y1PA 3WZWA 1IDDA 3WZVA 1G2UA 3UF6A 2UXQA 4IWHA 1CW4A 2G4OA 2ZTWA 1VLCA 2AYQA 3VMLA 5HN6A 5GRIB 1XGVA 5GRFB 2Y3ZA 3FMXX 1LWDA 5I95A 4L03A 1GROA 3TY3A 1IDFA 1DPZA 1PS6A 5J34A 3WZYA 1YXOA 4ICDA 3INMA 4YB4A 1XABA 4AOVA 5L58A 3BLXA 3TNGA 3MARA 3VL2A 4I3LA 1TYOA 5GRIA 4F7IA 5J33A 4I3KA 5GREB 1T09A 3FLKA 1P8FA 1AI2A 1XADA 1W0DA 4WUOA 4XS3A 1DR0A 1IDMA 1IDEA 1V5BA 4JA8A 3BLXB 1R8KA 2IV0A 5HN4A 2Y40A 7ICDA 1OSIA 1HQSA 1ZORA 1CM7A 5GREA 5HN3A 2D1CA 3MAPA 2D4VA 3WZXA 1VI1A 4AOYA 5LGEA 2Y42A 4XXVA 4L06A 2E5MA 1T0LA 1X0LA 3VKZA 4AJAA 4UMXA 3BLVB 1HJ6A 4ATYA 1CNZA 4XRXA 5DE1A 1IDCA 5K11A 1WALA 5GRLA 2E0CA 4L04A 1AI3A 4AJBA 3AH3A 2QFXA 4BNPA 4JQPA 4UMYA 3VL4A 1PS7A 1SJSA 1A05A 2UXRA 3DMSA 4KZOA 3VL7A 6ICDA 3VMKA 1HEXA 4AOUA 2QFWA 5GRLB 3U9EA 3VL3A 4AJ3A 3UDUA 1GRPA 3BLVA 2QFYA 9ICDA 4P69C 5ICDA 8ICDA 1XACA 1XAAA 3LCBC 1GC9A 1XKDA 3U1HA 3MASB 5I96A 1V53A 1PB3A 4AJSA 3TSNA 1CW1A 3TY4A 1BL5A 1ISOA 1PB1A 2HI1A 5GRHB 5K10A 1CW7A 5HN5A 3US8A 4HCXA 3ICDA 2DHTA 1YCOA 1OSJA 5J32A 3MASA 1U7NA 1V94A
chains in the Genus database with same CATH topology
2QFVA 3ASJA 1IKAA 1WPWA 5GRHA 3VL6A 3R8WA 5L57A 1GC8A 1DR8A 1IPDA 5GRFA 4AJCA 3UDOA 3VMJA 1PTMA 2Y41A 4AJRA 3LXYA 4Y1PA 3WZWA 1IDDA 3WZVA 1G2UA 3UF6A 2UXQA 4IWHA 1CW4A 2G4OA 2ZTWA 1VLCA 2AYQA 3VMLA 5HN6A 5GRIB 1XGVA 5GRFB 2Y3ZA 3FMXX 1LWDA 5I95A 4L03A 1GROA 3TY3A 1IDFA 1DPZA 1PS6A 5J34A 3WZYA 1YXOA 4ICDA 3INMA 4YB4A 1XABA 4AOVA 5L58A 3BLXA 3TNGA 3MARA 3VL2A 4I3LA 1TYOA 5GRIA 4F7IA 5J33A 4I3KA 5GREB 1T09A 3FLKA 1P8FA 1AI2A 1XADA 1W0DA 4WUOA 4XS3A 1DR0A 1IDMA 1IDEA 1V5BA 4JA8A 3BLXB 1R8KA 2IV0A 5HN4A 2Y40A 7ICDA 1OSIA 1HQSA 1ZORA 1CM7A 5GREA 5HN3A 2D1CA 3MAPA 2D4VA 3WZXA 1VI1A 4AOYA 5LGEA 2Y42A 4XXVA 4L06A 2E5MA 1T0LA 1X0LA 3VKZA 4AJAA 4UMXA 3BLVB 1HJ6A 4ATYA 1CNZA 4XRXA 5DE1A 1IDCA 5K11A 1WALA 5GRLA 2E0CA 4L04A 1AI3A 4AJBA 3AH3A 2QFXA 4BNPA 4JQPA 4UMYA 3VL4A 1PS7A 1SJSA 1A05A 2UXRA 3DMSA 4KZOA 3VL7A 6ICDA 3VMKA 1HEXA 4AOUA 2QFWA 5GRLB 3U9EA 3VL3A 4AJ3A 3UDUA 1GRPA 3BLVA 2QFYA 9ICDA 4P69C 5ICDA 8ICDA 1XACA 1XAAA 3LCBC 1GC9A 1XKDA 3U1HA 3MASB 5I96A 1V53A 1PB3A 4AJSA 3TSNA 1CW1A 3TY4A 1BL5A 1ISOA 1PB1A 2HI1A 5GRHB 5K10A 1CW7A 5HN5A 3US8A 4HCXA 3ICDA 2DHTA 1YCOA 1OSJA 5J32A 3MASA 1U7NA 1V94A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFV A;  3ASJ A;  1IKA A;  1WPW A;  5GRH A;  3VL6 A;  3R8W A;  5L57 A;  1GC8 A;  1DR8 A;  1IPD A;  5GRF A;  4AJC A;  3UDO A;  3VMJ A;  1PTM A;  2Y41 A;  4AJR A;  3LXY A;  4Y1P A;  3WZW A;  1IDD A;  3WZV A;  1G2U A;  3UF6 A;  2UXQ A;  4IWH A;  1CW4 A;  2G4O A;  2ZTW A;  1VLC A;  2AYQ A;  3VML A;  5HN6 A;  5GRI B;  1XGV A;  5GRF B;  2Y3Z A;  3FMX X;  1LWD A;  5I95 A;  4L03 A;  1GRO A;  3TY3 A;  1IDF A;  1DPZ A;  1PS6 A;  5J34 A;  3WZY A;  1YXO A;  4ICD A;  3INM A;  4YB4 A;  1XAB A;  4AOV A;  5L58 A;  3BLX A;  3TNG A;  3MAR A;  3VL2 A;  4I3L A;  1TYO A;  5GRI A;  4F7I A;  5J33 A;  4I3K A;  5GRE B;  1T09 A;  3FLK A;  1P8F A;  1AI2 A;  1XAD A;  1W0D A;  4WUO A;  4XS3 A;  1DR0 A;  1IDM A;  1IDE A;  1V5B A;  4JA8 A;  3BLX B;  1R8K A;  2IV0 A;  5HN4 A;  2Y40 A;  7ICD A;  1OSI A;  1HQS A;  1ZOR A;  1CM7 A;  5GRE A;  5HN3 A;  2D1C A;  3MAP A;  2D4V A;  3WZX A;  1VI1 A;  4AOY A;  5LGE A;  2Y42 A;  4XXV A;  4L06 A;  2E5M A;  1T0L A;  1X0L A;  3VKZ A;  4AJA A;  4UMX A;  3BLV B;  1HJ6 A;  4ATY A;  1CNZ A;  4XRX A;  5DE1 A;  1IDC A;  5K11 A;  1WAL A;  5GRL A;  2E0C A;  4L04 A;  1AI3 A;  4AJB A;  3AH3 A;  2QFX A;  4BNP A;  4JQP A;  4UMY A;  3VL4 A;  1PS7 A;  1SJS A;  1A05 A;  2UXR A;  3DMS A;  4KZO A;  3VL7 A;  6ICD A;  3VMK A;  1HEX A;  4AOU A;  2QFW A;  5GRL B;  3U9E A;  3VL3 A;  4AJ3 A;  3UDU A;  1GRP A;  3BLV A;  2QFY A;  9ICD A;  4P69 C;  5ICD A;  8ICD A;  1XAC A;  1XAA A;  3LCB C;  1GC9 A;  1XKD A;  3U1H A;  3MAS B;  5I96 A;  1V53 A;  1PB3 A;  4AJS A;  3TSN A;  1CW1 A;  3TY4 A;  1BL5 A;  1ISO A;  1PB1 A;  2HI1 A;  5GRH B;  5K10 A;  1CW7 A;  5HN5 A;  3US8 A;  4HCX A;  3ICD A;  2DHT A;  1YCO A;  1OSJ A;  5J32 A;  3MAS A;  1U7N A;  1V94 A; 
#chains in the Genus database with same CATH topology
 2QFV A;  3ASJ A;  1IKA A;  1WPW A;  5GRH A;  3VL6 A;  3R8W A;  5L57 A;  1GC8 A;  1DR8 A;  1IPD A;  5GRF A;  4AJC A;  3UDO A;  3VMJ A;  1PTM A;  2Y41 A;  4AJR A;  3LXY A;  4Y1P A;  3WZW A;  1IDD A;  3WZV A;  1G2U A;  3UF6 A;  2UXQ A;  4IWH A;  1CW4 A;  2G4O A;  2ZTW A;  1VLC A;  2AYQ A;  3VML A;  5HN6 A;  5GRI B;  1XGV A;  5GRF B;  2Y3Z A;  3FMX X;  1LWD A;  5I95 A;  4L03 A;  1GRO A;  3TY3 A;  1IDF A;  1DPZ A;  1PS6 A;  5J34 A;  3WZY A;  1YXO A;  4ICD A;  3INM A;  4YB4 A;  1XAB A;  4AOV A;  5L58 A;  3BLX A;  3TNG A;  3MAR A;  3VL2 A;  4I3L A;  1TYO A;  5GRI A;  4F7I A;  5J33 A;  4I3K A;  5GRE B;  1T09 A;  3FLK A;  1P8F A;  1AI2 A;  1XAD A;  1W0D A;  4WUO A;  4XS3 A;  1DR0 A;  1IDM A;  1IDE A;  1V5B A;  4JA8 A;  3BLX B;  1R8K A;  2IV0 A;  5HN4 A;  2Y40 A;  7ICD A;  1OSI A;  1HQS A;  1ZOR A;  1CM7 A;  5GRE A;  5HN3 A;  2D1C A;  3MAP A;  2D4V A;  3WZX A;  1VI1 A;  4AOY A;  5LGE A;  2Y42 A;  4XXV A;  4L06 A;  2E5M A;  1T0L A;  1X0L A;  3VKZ A;  4AJA A;  4UMX A;  3BLV B;  1HJ6 A;  4ATY A;  1CNZ A;  4XRX A;  5DE1 A;  1IDC A;  5K11 A;  1WAL A;  5GRL A;  2E0C A;  4L04 A;  1AI3 A;  4AJB A;  3AH3 A;  2QFX A;  4BNP A;  4JQP A;  4UMY A;  3VL4 A;  1PS7 A;  1SJS A;  1A05 A;  2UXR A;  3DMS A;  4KZO A;  3VL7 A;  6ICD A;  3VMK A;  1HEX A;  4AOU A;  2QFW A;  5GRL B;  3U9E A;  3VL3 A;  4AJ3 A;  3UDU A;  1GRP A;  3BLV A;  2QFY A;  9ICD A;  4P69 C;  5ICD A;  8ICD A;  1XAC A;  1XAA A;  3LCB C;  1GC9 A;  1XKD A;  3U1H A;  3MAS B;  5I96 A;  1V53 A;  1PB3 A;  4AJS A;  3TSN A;  1CW1 A;  3TY4 A;  1BL5 A;  1ISO A;  1PB1 A;  2HI1 A;  5GRH B;  5K10 A;  1CW7 A;  5HN5 A;  3US8 A;  4HCX A;  3ICD A;  2DHT A;  1YCO A;  1OSJ A;  5J32 A;  3MAS A;  1U7N A;  1V94 A; 
#chains in the Genus database with same CATH homology
 2QFV A;  3ASJ A;  1IKA A;  1WPW A;  5GRH A;  3VL6 A;  3R8W A;  5L57 A;  1GC8 A;  1DR8 A;  1IPD A;  5GRF A;  4AJC A;  3UDO A;  3VMJ A;  1PTM A;  2Y41 A;  4AJR A;  3LXY A;  4Y1P A;  3WZW A;  1IDD A;  3WZV A;  1G2U A;  3UF6 A;  2UXQ A;  4IWH A;  1CW4 A;  2G4O A;  2ZTW A;  1VLC A;  2AYQ A;  3VML A;  5HN6 A;  5GRI B;  1XGV A;  5GRF B;  2Y3Z A;  3FMX X;  1LWD A;  5I95 A;  4L03 A;  1GRO A;  3TY3 A;  1IDF A;  1DPZ A;  1PS6 A;  5J34 A;  3WZY A;  1YXO A;  4ICD A;  3INM A;  4YB4 A;  1XAB A;  4AOV A;  5L58 A;  3BLX A;  3TNG A;  3MAR A;  3VL2 A;  4I3L A;  1TYO A;  5GRI A;  4F7I A;  5J33 A;  4I3K A;  5GRE B;  1T09 A;  3FLK A;  1P8F A;  1AI2 A;  1XAD A;  1W0D A;  4WUO A;  4XS3 A;  1DR0 A;  1IDM A;  1IDE A;  1V5B A;  4JA8 A;  3BLX B;  1R8K A;  2IV0 A;  5HN4 A;  2Y40 A;  7ICD A;  1OSI A;  1HQS A;  1ZOR A;  1CM7 A;  5GRE A;  5HN3 A;  2D1C A;  3MAP A;  2D4V A;  3WZX A;  1VI1 A;  4AOY A;  5LGE A;  2Y42 A;  4XXV A;  4L06 A;  2E5M A;  1T0L A;  1X0L A;  3VKZ A;  4AJA A;  4UMX A;  3BLV B;  1HJ6 A;  4ATY A;  1CNZ A;  4XRX A;  5DE1 A;  1IDC A;  5K11 A;  1WAL A;  5GRL A;  2E0C A;  4L04 A;  1AI3 A;  4AJB A;  3AH3 A;  2QFX A;  4BNP A;  4JQP A;  4UMY A;  3VL4 A;  1PS7 A;  1SJS A;  1A05 A;  2UXR A;  3DMS A;  4KZO A;  3VL7 A;  6ICD A;  3VMK A;  1HEX A;  4AOU A;  2QFW A;  5GRL B;  3U9E A;  3VL3 A;  4AJ3 A;  3UDU A;  1GRP A;  3BLV A;  2QFY A;  9ICD A;  4P69 C;  5ICD A;  8ICD A;  1XAC A;  1XAA A;  3LCB C;  1GC9 A;  1XKD A;  3U1H A;  3MAS B;  5I96 A;  1V53 A;  1PB3 A;  4AJS A;  3TSN A;  1CW1 A;  3TY4 A;  1BL5 A;  1ISO A;  1PB1 A;  2HI1 A;  5GRH B;  5K10 A;  1CW7 A;  5HN5 A;  3US8 A;  4HCX A;  3ICD A;  2DHT A;  1YCO A;  1OSJ A;  5J32 A;  3MAS A;  1U7N A;  1V94 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...