1WR5A

Three dimensional structure of the e41k mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
108
structure length
108
Chain Sequence
AAPKAPADGLKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKKDYQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKCHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c3
publication title Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F
pubmed rcsb
source organism Desulfovibrio vulgaris str. 'miyazaki f'
total genus 24
structure length 108
sequence length 108
ec nomenclature
pdb deposition date 2004-10-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1wr5A00
2MZ9A 3SJ0X 3H4NA 1A2IA 2CVCA 1GMBA 1OFYA 1UPDA 3CYRA 1AQEA 4HBFA 2LZZA 1UP9A 1QN1A 2CDVA 1EHJA 2YYXA 2YYWA 4HC3A 3OUQA 1J0PA 1IT1A 1L3OA 2KMYA 2E84A 1GWSA 2CYMA 3H33A 1CZJA 1NEWA 1W7OA 3OV0A 3BXUA 2EWIA 2CY3A 3SJ1X 2EWUA 2KSUA 4HB8A 2CTHA 1GYOA 2LDOA 4HDLA 3OUEA 1H29A 3CARA 1F22A 1LM2A 4HAJA 1I77A 19HCA 4HB6A 2FFNA 3H34A 2A3PA 2N91A 1HH5A 3SJ4X 1MDVA 1OFWA 3SELX 1KWJA 1DUWA 1OS6A 3CAOA 1QN0A 1RWJA 1WADA 2BQ4A 2Z47A 2BPNA 2EWKA 2YXCA 1J0OA 1Z1NX 1WR5A 2A3MA 1GM4A
chains in the Genus database with same CATH superfamily
2MZ9A 3SJ0X 3H4NA 1A2IA 2CVCA 1GMBA 1OFYA 1UPDA 3CYRA 1AQEA 4HBFA 2LZZA 1UP9A 1QN1A 2CDVA 1EHJA 2YYXA 2YYWA 4HC3A 3OUQA 1J0PA 1IT1A 1L3OA 2KMYA 2E84A 1GWSA 2CYMA 3H33A 1CZJA 1NEWA 1W7OA 3OV0A 3BXUA 2EWIA 2CY3A 3SJ1X 2EWUA 2KSUA 4HB8A 2CTHA 1GYOA 2LDOA 4HDLA 3OUEA 1H29A 3CARA 1F22A 1LM2A 4HAJA 1I77A 19HCA 4HB6A 2FFNA 3H34A 2A3PA 2N91A 1HH5A 3SJ4X 1MDVA 1OFWA 3SELX 1KWJA 1DUWA 1OS6A 3CAOA 1QN0A 1RWJA 1WADA 2BQ4A 2Z47A 2BPNA 2EWKA 2YXCA 1J0OA 1Z1NX 1WR5A 2A3MA 1GM4A
chains in the Genus database with same CATH topology
2MZ9A 3SJ0X 3H4NA 1A2IA 2CVCA 1GMBA 1OFYA 1UPDA 3CYRA 1AQEA 4HBFA 2LZZA 1UP9A 1QN1A 2CDVA 1EHJA 2YYXA 2YYWA 4HC3A 3OUQA 1J0PA 1IT1A 1L3OA 2KMYA 2E84A 1GWSA 2CYMA 3H33A 1CZJA 1NEWA 1W7OA 3OV0A 3BXUA 2EWIA 2CY3A 3SJ1X 2EWUA 2KSUA 4HB8A 2CTHA 1GYOA 2LDOA 4HDLA 3OUEA 1H29A 3CARA 1F22A 1LM2A 4HAJA 1I77A 19HCA 4HB6A 2FFNA 3H34A 2A3PA 2N91A 1HH5A 3SJ4X 1MDVA 1OFWA 3SELX 1KWJA 1DUWA 1OS6A 3CAOA 1QN0A 1RWJA 1WADA 2BQ4A 2Z47A 2BPNA 2EWKA 2YXCA 1J0OA 1Z1NX 1WR5A 2A3MA 1GM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MZ9 A;  3SJ0 X;  3H4N A;  1A2I A;  2CVC A;  1GMB A;  1OFY A;  1UPD A;  3CYR A;  1AQE A;  4HBF A;  2LZZ A;  1UP9 A;  1QN1 A;  2CDV A;  1EHJ A;  2YYX A;  2YYW A;  4HC3 A;  3OUQ A;  1J0P A;  1IT1 A;  1L3O A;  2KMY A;  2E84 A;  1GWS A;  2CYM A;  3H33 A;  1CZJ A;  1NEW A;  1W7O A;  3OV0 A;  3BXU A;  2EWI A;  2CY3 A;  3SJ1 X;  2EWU A;  2KSU A;  4HB8 A;  2CTH A;  1GYO A;  2LDO A;  4HDL A;  3OUE A;  1H29 A;  3CAR A;  1F22 A;  1LM2 A;  4HAJ A;  1I77 A;  19HC A;  4HB6 A;  2FFN A;  3H34 A;  2A3P A;  2N91 A;  1HH5 A;  3SJ4 X;  1MDV A;  1OFW A;  3SEL X;  1KWJ A;  1DUW A;  1OS6 A;  3CAO A;  1QN0 A;  1RWJ A;  1WAD A;  2BQ4 A;  2Z47 A;  2BPN A;  2EWK A;  2YXC A;  1J0O A;  1Z1N X;  1WR5 A;  2A3M A;  1GM4 A; 
#chains in the Genus database with same CATH topology
 2MZ9 A;  3SJ0 X;  3H4N A;  1A2I A;  2CVC A;  1GMB A;  1OFY A;  1UPD A;  3CYR A;  1AQE A;  4HBF A;  2LZZ A;  1UP9 A;  1QN1 A;  2CDV A;  1EHJ A;  2YYX A;  2YYW A;  4HC3 A;  3OUQ A;  1J0P A;  1IT1 A;  1L3O A;  2KMY A;  2E84 A;  1GWS A;  2CYM A;  3H33 A;  1CZJ A;  1NEW A;  1W7O A;  3OV0 A;  3BXU A;  2EWI A;  2CY3 A;  3SJ1 X;  2EWU A;  2KSU A;  4HB8 A;  2CTH A;  1GYO A;  2LDO A;  4HDL A;  3OUE A;  1H29 A;  3CAR A;  1F22 A;  1LM2 A;  4HAJ A;  1I77 A;  19HC A;  4HB6 A;  2FFN A;  3H34 A;  2A3P A;  2N91 A;  1HH5 A;  3SJ4 X;  1MDV A;  1OFW A;  3SEL X;  1KWJ A;  1DUW A;  1OS6 A;  3CAO A;  1QN0 A;  1RWJ A;  1WAD A;  2BQ4 A;  2Z47 A;  2BPN A;  2EWK A;  2YXC A;  1J0O A;  1Z1N X;  1WR5 A;  2A3M A;  1GM4 A; 
#chains in the Genus database with same CATH homology
 2MZ9 A;  3SJ0 X;  3H4N A;  1A2I A;  2CVC A;  1GMB A;  1OFY A;  1UPD A;  3CYR A;  1AQE A;  4HBF A;  2LZZ A;  1UP9 A;  1QN1 A;  2CDV A;  1EHJ A;  2YYX A;  2YYW A;  4HC3 A;  3OUQ A;  1J0P A;  1IT1 A;  1L3O A;  2KMY A;  2E84 A;  1GWS A;  2CYM A;  3H33 A;  1CZJ A;  1NEW A;  1W7O A;  3OV0 A;  3BXU A;  2EWI A;  2CY3 A;  3SJ1 X;  2EWU A;  2KSU A;  4HB8 A;  2CTH A;  1GYO A;  2LDO A;  4HDL A;  3OUE A;  1H29 A;  3CAR A;  1F22 A;  1LM2 A;  4HAJ A;  1I77 A;  19HC A;  4HB6 A;  2FFN A;  3H34 A;  2A3P A;  2N91 A;  1HH5 A;  3SJ4 X;  1MDV A;  1OFW A;  3SEL X;  1KWJ A;  1DUW A;  1OS6 A;  3CAO A;  1QN0 A;  1RWJ A;  1WAD A;  2BQ4 A;  2Z47 A;  2BPN A;  2EWK A;  2YXC A;  1J0O A;  1Z1N X;  1WR5 A;  2A3M A;  1GM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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