1WRTR

Nmr study of apo trp repressor
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords APO TRP REPRESSOR
publication title Refined solution structures of the Escherichia coli trp holo- and aporepressor.
pubmed doi rcsb
molecule tags Operon repressor
total genus 19
structure length 104
sequence length 104
chains with identical sequence S
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1wrtR00
1WRPR 1TRRA 1JHGA 2XDIA 3FRWA 3G1CA 2OZ9R 3SSWN 3SSXN 1TROA 1MI7R 3KORA 1WRTR 1WRSR 1CO0A 3WRPA 1RCSA 1ZT9A
chains in the Genus database with same CATH superfamily
4YQDA 4YQAA 1JHGA 4YQ1A 4YPYA 3QUVA 4YQPA 4H3YA 1WRTR 4YQCA 4YVGA 3G1CA 4YQ7A 3AXZA 5D9FA 4YQ9A 1ZT9A 4YQRA 4YQGA 1CO0A 1RCSA 1TRRA 1UAMA 3KNUA 2XDIA 4YVHA 4YVKA 4YPWA 1P9PA 4YQBA 4YQQA 4IG6A 4YVJA 1OY5A 4YQJA 1MI7R 3IEFA 3KORA 4YQOA 4YVIA 1UAJA 4YQ4A 1UALA 3KY7A 1WRPR 4YQ0A 4YQSA 4YQ2A 3SSWN 2OZ9R 3SSXN 4YQ6A 1TROA 1WRSR 4YQIA 4YQ8A 4YQKA 3FRWA 4YQ5A 4H3ZA 4MCCA 4YPXA 4YPZA 4MCBA 4YQ3A 4YQLA 4YQNA 4YQTA 4MCDA 3WRPA 1UAKA
chains in the Genus database with same CATH topology
1WRPR 1TRRA 1JHGA 2XDIA 3FRWA 3G1CA 2OZ9R 3SSWN 3SSXN 1TROA 1MI7R 3KORA 1WRTR 1WRSR 1CO0A 3WRPA 1RCSA 1ZT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRP R;  1TRR A;  1JHG A;  2XDI A;  3FRW A;  3G1C A;  2OZ9 R;  3SSW N;  3SSX N;  1TRO A;  1MI7 R;  3KOR A;  1WRT R;  1WRS R;  1CO0 A;  3WRP A;  1RCS A;  1ZT9 A; 
#chains in the Genus database with same CATH topology
 4YQD A;  4YQA A;  1JHG A;  4YQ1 A;  4YPY A;  3QUV A;  4YQP A;  4H3Y A;  1WRT R;  4YQC A;  4YVG A;  3G1C A;  4YQ7 A;  3AXZ A;  5D9F A;  4YQ9 A;  1ZT9 A;  4YQR A;  4YQG A;  1CO0 A;  1RCS A;  1TRR A;  1UAM A;  3KNU A;  2XDI A;  4YVH A;  4YVK A;  4YPW A;  1P9P A;  4YQB A;  4YQQ A;  4IG6 A;  4YVJ A;  1OY5 A;  4YQJ A;  1MI7 R;  3IEF A;  3KOR A;  4YQO A;  4YVI A;  1UAJ A;  4YQ4 A;  1UAL A;  3KY7 A;  1WRP R;  4YQ0 A;  4YQS A;  4YQ2 A;  3SSW N;  2OZ9 R;  3SSX N;  4YQ6 A;  1TRO A;  1WRS R;  4YQI A;  4YQ8 A;  4YQK A;  3FRW A;  4YQ5 A;  4H3Z A;  4MCC A;  4YPX A;  4YPZ A;  4MCB A;  4YQ3 A;  4YQL A;  4YQN A;  4YQT A;  4MCD A;  3WRP A;  1UAK A; 
#chains in the Genus database with same CATH homology
 1WRP R;  1TRR A;  1JHG A;  2XDI A;  3FRW A;  3G1C A;  2OZ9 R;  3SSW N;  3SSX N;  1TRO A;  1MI7 R;  3KOR A;  1WRT R;  1WRS R;  1CO0 A;  3WRP A;  1RCS A;  1ZT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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