1WRUA

Structure of central hub elucidated by x-ray analysis of gene product 44; baseplate component of bacteriophage mu
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
344
structure length
325
Chain Sequence
NTVTLRADGRLFTGWTSVSVTRSIESVAGYFELGVNVPPGTDLSGLAPGKKFTLEIGGQIVCTGYIDSRRRQMTADSMKITVAGRDKTADLIDCAAVYSGGQWKNRTLEQIARDLCAPYGVTVRWELSDKESSAAFPGFTLDHSETVYEALVRASRARGVLMTSNAAGELVFSRAASTATDELVLGENLLTLDFEEDFRDRFSEYTVKSRKGTATDSDVTRYRPMIIIADSKITAKDAQARALREQRRRLAKSITFEAEIDGWTRKDGQLWMPNLLVTIDASKYAIKTTELLVSKVTLILNDQDGLKTRVSLAPREGFLVPVESD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
rcsb
source organism Enterobacteria phage mu
molecule tags Structural protein
molecule keywords 43 kDa tail protein
total genus 89
structure length 325
sequence length 344
ec nomenclature
pdb deposition date 2004-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05954 Phage_GPD Phage late control gene D protein (GPD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.300.10 Mainly Beta Roll Phage tail proteins - horseshoe like beta roll fold Baseplate protein-like domain - beta roll fold 1wruA01
3.30.1920.10 Alpha Beta 2-Layer Sandwich Phage tail proteins - 2 layer sandwich fold Baseplate protein-like domains - 2 layer sandwich fold 1wruA03
3.55.50.10 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Baseplate protein-like domains 1wruA02
4MTKA 2P5ZX 1WRUA 3D37A 4UHVA 3CDDA
chains in the Genus database with same CATH superfamily
4MTKA 4JTMA 4AR0A 2M5JA 2P5ZX 2W76A 2W6UA 3D37A 4UHVA 2D1UA 2W75A 4M0NA 2L4WA 3CDDA 2W78A 1WRUA 2X531 1WTHD 4G08A 2W6TA 3GR5A 2IAHA 1ZZVA 2WZPR 2W77A 1K28D 2A02A 2O5PA 3EZJA 3OV5A 3GS9A 2W16A 4M0HA 3ADYA 2Z6BD
chains in the Genus database with same CATH topology
4MTKA 2P5ZX 1WRUA 3D37A 4UHVA 3CDDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MTK A;  2P5Z X;  1WRU A;  3D37 A;  4UHV A;  3CDD A; 
#chains in the Genus database with same CATH topology
 4MTK A;  4JTM A;  4AR0 A;  2M5J A;  2P5Z X;  2W76 A;  2W6U A;  3D37 A;  4UHV A;  2D1U A;  2W75 A;  4M0N A;  2L4W A;  3CDD A;  2W78 A;  1WRU A;  2X53 1;  1WTH D;  4G08 A;  2W6T A;  3GR5 A;  2IAH A;  1ZZV A;  2WZP R;  2W77 A;  1K28 D;  2A02 A;  2O5P A;  3EZJ A;  3OV5 A;  3GS9 A;  2W16 A;  4M0H A;  3ADY A;  2Z6B D; 
#chains in the Genus database with same CATH homology
 4MTK A;  2P5Z X;  1WRU A;  3D37 A;  4UHV A;  3CDD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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