1WU2A

Crystal structure of molybdopterin biosynthesis moea protein from pyrococcus horikoshii ot3
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
391
structure length
383
Chain Sequence
KLVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQEMVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITDYAHKFVNLLFHGTTIKPGRPFGYGEKVFIMSGYPVSVFAQFNLFVKHALAKMVGAQNYEVKVKAILQDDIPSQLGRYEFIKIYYENGIARVIKKKGSGILSSLLASNAYLEIPEDSEGYRRGEEVWITLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of molybdopterin biosynthesis moeA protein from Pyrococcus horikoshii OT3
rcsb
molecule tags Structural genomics,biosynthetic protein
source organism Pyrococcus horikoshii
molecule keywords molybdopterin biosynthesis moeA protein
total genus 95
structure length 383
sequence length 391
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
A PF03453 MoeA_N MoeA N-terminal region (domain I and II)
A PF03454 MoeA_C MoeA C-terminal region (domain IV)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.340.10 Mainly Beta Beta Barrel Beta-clip MoeA, C-terminal, domain IV 1wu2A04
2.170.190.11 Mainly Beta Beta Complex Molybdopterin biosynthesis moeA protein; domain 3 Molybdopterin biosynthesis moea protein, domain 3. 1wu2A03
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 1wu2A01
3.90.105.10 Alpha Beta Alpha-Beta Complex Molybdopterin biosynthesis moea protein, domain 2 Molybdopterin biosynthesis moea protein, domain 2 1wu2A02
1O8NA 1MKZA 3MCJA 2G2CA 4CT8A 3KBQA 3MCHA 2FU3A 5ERSA 2NQUA 2NRPA 4U90A 2NQQA 1Y5EA 4PD0A 4CTAA 2NQKA 2NROA 1WU2A 4U91A 2G4RA 1JLJA 5ERVA 4CT9A 4TK1A 3RFQA 2NQNA 1IHCA 3OI9A 4UUXA 4NWOA 3MCIA 4TK4A 1UZ5A 5G2SA 2F7WA 4TWGA 4UUWA 3IWTA 2PBQA 1DI6A 5ERQA 1R2KA 4LHBA 1G8LA 4TK3A 2NRSA 1T3EA 2IS8A 4XCWA 2FTSA 1UUXA 4CTAB 2NQMA 2X3LA 5ERUA 1EAVA 3TCRA 1O8OA 2NQSA 2F7YA 3PZYA 1FC5A 2NQVA 5ERRA 1DI7A 1O8QA 3K6AA 1XI8A 1G8RA 5G2RA 2QQ1A 2NQRA 1UUYA 4UOCA 5ERTA 4PD1A
chains in the Genus database with same CATH superfamily
1O8NA 1MKZA 3MCJA 2G2CA 4CT8A 3KBQA 1IW7D 3MCHA 2FU3A 5ERSA 2NQUA 2NRPA 4U90A 2NQQA 1Y5EA 4PD0A 4CTAA 2NQKA 2NROA 1YZYA 1WU2A 4U91A 2G4RA 1JLJA 5ERVA 4CT9A 4TK1A 3RFQA 3JSYA 2NQNA 1IHCA 3OI9A 4UUXA 1I6VD 4NWOA 3MCIA 4TK4A 1UZ5A 5G2SA 2F7WA 4TWGA 4UUWA 3IWTA 2PBQA 1DI6A 5ERQA 1R2KA 4LHBA 1G8LA 4TK3A 2NRSA 1T3EA 2IS8A 4XCWA 2FTSA 1UUXA 4NWBA 4CTAB 2NQMA 2X3LA 5ERUA 1HQMD 1EAVA 3TCRA 1O8OA 3DQQA 2NQSA 2F7YA 3PZYA 1FC5A 2NQVA 5D6GA 5ERRA 5DMHA 1DI7A 1O8QA 3K6AA 1XI8A 1G8RA 5G2RA 2QQ1A 2NQRA 1UUYA 4UOCA 5ERTA 5D8HB 4PD1A
chains in the Genus database with same CATH topology
1O8NA 1MKZA 3MCJA 2G2CA 4CT8A 3KBQA 1IW7D 3MCHA 2FU3A 5ERSA 2NQUA 2NRPA 4U90A 2NQQA 1Y5EA 4PD0A 4CTAA 2NQKA 2NROA 1WU2A 4U91A 2G4RA 1JLJA 5ERVA 4CT9A 4TK1A 3RFQA 3JSYA 2NQNA 1IHCA 3OI9A 4UUXA 1I6VD 4NWOA 3MCIA 4TK4A 1UZ5A 5G2SA 2F7WA 4TWGA 4UUWA 3IWTA 2PBQA 1DI6A 5ERQA 1R2KA 4LHBA 1G8LA 4TK3A 2NRSA 1T3EA 2IS8A 4XCWA 2FTSA 1UUXA 4NWBA 4CTAB 2NQMA 2X3LA 5ERUA 1HQMD 1EAVA 3TCRA 1O8OA 2NQSA 2F7YA 3PZYA 1FC5A 2NQVA 5D6GA 5ERRA 1DI7A 1O8QA 3K6AA 1XI8A 1G8RA 5G2RA 2QQ1A 2NQRA 1UUYA 4UOCA 5ERTA 5D8HB 4PD1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8N A;  1MKZ A;  3MCJ A;  2G2C A;  4CT8 A;  3KBQ A;  3MCH A;  2FU3 A;  5ERS A;  2NQU A;  2NRP A;  4U90 A;  2NQQ A;  1Y5E A;  4PD0 A;  4CTA A;  2NQK A;  2NRO A;  1WU2 A;  4U91 A;  2G4R A;  1JLJ A;  5ERV A;  4CT9 A;  4TK1 A;  3RFQ A;  2NQN A;  1IHC A;  3OI9 A;  4UUX A;  4NWO A;  3MCI A;  4TK4 A;  1UZ5 A;  5G2S A;  2F7W A;  4TWG A;  4UUW A;  3IWT A;  2PBQ A;  1DI6 A;  5ERQ A;  1R2K A;  4LHB A;  1G8L A;  4TK3 A;  2NRS A;  1T3E A;  2IS8 A;  4XCW A;  2FTS A;  1UUX A;  4CTA B;  2NQM A;  2X3L A;  5ERU A;  1EAV A;  3TCR A;  1O8O A;  2NQS A;  2F7Y A;  3PZY A;  1FC5 A;  2NQV A;  5ERR A;  1DI7 A;  1O8Q A;  3K6A A;  1XI8 A;  1G8R A;  5G2R A;  2QQ1 A;  2NQR A;  1UUY A;  4UOC A;  5ERT A;  4PD1 A; 
#chains in the Genus database with same CATH topology
 1O8N A;  1MKZ A;  3MCJ A;  2G2C A;  4CT8 A;  3KBQ A;  1IW7 D;  3MCH A;  2FU3 A;  5ERS A;  2NQU A;  2NRP A;  4U90 A;  2NQQ A;  1Y5E A;  4PD0 A;  4CTA A;  2NQK A;  2NRO A;  1YZY A;  1WU2 A;  4U91 A;  2G4R A;  1JLJ A;  5ERV A;  4CT9 A;  4TK1 A;  3RFQ A;  3JSY A;  2NQN A;  1IHC A;  3OI9 A;  4UUX A;  1I6V D;  4NWO A;  3MCI A;  4TK4 A;  1UZ5 A;  5G2S A;  2F7W A;  4TWG A;  4UUW A;  3IWT A;  2PBQ A;  1DI6 A;  5ERQ A;  1R2K A;  4LHB A;  1G8L A;  4TK3 A;  2NRS A;  1T3E A;  2IS8 A;  4XCW A;  2FTS A;  1UUX A;  4NWB A;  4CTA B;  2NQM A;  2X3L A;  5ERU A;  1HQM D;  1EAV A;  3TCR A;  1O8O A;  3DQQ A;  2NQS A;  2F7Y A;  3PZY A;  1FC5 A;  2NQV A;  5D6G A;  5ERR A;  5DMH A;  1DI7 A;  1O8Q A;  3K6A A;  1XI8 A;  1G8R A;  5G2R A;  2QQ1 A;  2NQR A;  1UUY A;  4UOC A;  5ERT A;  5D8H B;  4PD1 A; 
#chains in the Genus database with same CATH homology
 1O8N A;  1MKZ A;  3MCJ A;  2G2C A;  4CT8 A;  3KBQ A;  1IW7 D;  3MCH A;  2FU3 A;  5ERS A;  2NQU A;  2NRP A;  4U90 A;  2NQQ A;  1Y5E A;  4PD0 A;  4CTA A;  2NQK A;  2NRO A;  1WU2 A;  4U91 A;  2G4R A;  1JLJ A;  5ERV A;  4CT9 A;  4TK1 A;  3RFQ A;  3JSY A;  2NQN A;  1IHC A;  3OI9 A;  4UUX A;  1I6V D;  4NWO A;  3MCI A;  4TK4 A;  1UZ5 A;  5G2S A;  2F7W A;  4TWG A;  4UUW A;  3IWT A;  2PBQ A;  1DI6 A;  5ERQ A;  1R2K A;  4LHB A;  1G8L A;  4TK3 A;  2NRS A;  1T3E A;  2IS8 A;  4XCW A;  2FTS A;  1UUX A;  4NWB A;  4CTA B;  2NQM A;  2X3L A;  5ERU A;  1HQM D;  1EAV A;  3TCR A;  1O8O A;  2NQS A;  2F7Y A;  3PZY A;  1FC5 A;  2NQV A;  5D6G A;  5ERR A;  1DI7 A;  1O8Q A;  3K6A A;  1XI8 A;  1G8R A;  5G2R A;  2QQ1 A;  2NQR A;  1UUY A;  4UOC A;  5ERT A;  5D8H B;  4PD1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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