1WVBA

Crystal structure of human arginase i: the mutant e256q
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
309
structure length
309
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYRQGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Crystal structure of human arginase I: the mutant E256Q
rcsb
source organism Homo sapiens
total genus 102
structure length 309
sequence length 309
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2004-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1wvbA00
3NIQA 4RHLA 1WOGA 4Q40A 1HQHA 3NIOA 5HJAA 2CEVA 2RLAA 4MYNA 1P8SA 2EF4A 3THHA 2PLLA 4IXUA 1P8NA 3LHLA 4IU4A 3E8ZA 3E9BA 1GQ7A 4FCKA 4IU5A 1T5FA 3RLAA 4IU1A 3M1RA 4GWDA 4MYKA 1XFKA 2AEBA 2PHOA 2EIVA 1HQFA 4Q3QA 4HXQA 1HQXA 4RLAA 1WOIA 4FCIA 3NIPA 3E6KA 4RHJA 4Q3RC 4ITYA 1RLAA 2EF5A 1WVAA 1HQ5A 1T4SA 4GSVA 5RLAA 1T5GA 1TBHA 1WVBA 4RHQA 3SJTA 2A0MA 4G3HA 1HQGA 4Q3SA 3LP7A 3TH7A 4DZ4A 4Q3VA 3DJ8A 1GQ6A 4IXVA 2PHAA 4RHKA 1P8QA 3F80A 4HWWA 1P8OA 1TBJA 2ZAVA 4MYLA 4Q3RA 4MXRA 3TF3A 4Q41A 3E6VA 5HJ9A 3MJLA 1CEVA 4IE3A 4Q3UA 1P8MA 1R1OA 3MMRA 4MYFA 1T4TA 4RHMA 4GSMA 4RHIA 1ZPGA 1T4RA 3GN0A 3MFVA 4GSZA 4CEVA 3E8QA 1TA1A 1T4PA 3THEA 1D3VA 4Q42A 4Q3PA 3PZLA 3GMZA 3SKKA 1ZPEA 4I06A 3KV2A 4IU0A 3CEVA 4GWCA 4IE1A 1WOHA 4HZEA 1PQ3A 5CEVA 4Q3TA 3MFWA 3LP4A 1P8PA 4IE2A 3SL1A 3THJA 1P8RA 3SL0A 1TBLA
chains in the Genus database with same CATH superfamily
3NIQA 4RHLA 2V5WA 4ZUQA 1WOGA 5BWZA 4Q40A 3Q9CA 4BZ9A 1ZZ0A 4QA6A 1HQHA 3NIOA 5G0XA 5HJAA 2CEVA 5A2SA 1W22A 3EWFA 2RLAA 4MYNA 1P8SA 2EF4A 3THHA 2PLLA 5G0HA 5G0IA 3EW8A 4IXUA 3F07A 5FCWA 1P8NA 3LHLA 4IU4A 3E8ZA 3E9BA 1GQ7A 4FCKA 4IU5A 1T5FA 3RLAA 4IU1A 5ICNB 3M1RA 4GWDA 5EF7A 4MYKA 5JI5A 4QA5A 1XFKA 2AEBA 5DC7A 5EEIA 2PHOA 2EIVA 5EFKB 1HQFA 4Q3QA 4HXQA 2VQWG 3F06A 4ZUNA 1HQXA 4RLAA 1WOIA 3MZ3A 3NIPA 3E6KA 4FCIA 4RHJA 1C3RA 4Q3RC 4ITYA 5G12A 1RLAA 2EF5A 3Q9BA 1WVAA 1HQ5A 1T4SA 2V5XA 4GSVA 1T5GA 5EFGA 5RLAA 3SFFA 1C3PA 4CBTA 5EENA 2VQQA 1TBHA 1WVBA 3EZTA 4RHQA 3SJTA 2A0MA 4QA0A 4G3HA 1HQGA 3C0YA 4Q3SA 3MZ6A 3LP7A 5THSA 3ZNSA 1T69A 3TH7A 5D1CA 4DZ4A 4Q3VA 5EF8A 3MAXA 3DJ8A 1GQ6A 5EEKA 5DC6A 4IXVA 2PHAA 4ZUOA 5THTA 5EFBD 4RHKA 1P8QA 3F80A 5IWGA 4HWWA 5G0GA 5G17A 1P8OA 1TBJA 5G13A 3RQDA 2ZAVA 4MYLA 5EFNA 4Q3RA 5G11A 4MXRA 4BKXB 4QA4A 1T64A 4ZURA 3TF3A 3MENA 4Q41A 4QA1A 5G0JA 3E6VA 5HJ9A 4BZ8A 3MJLA 5FUEA 1CEVA 4QA2A 4IE3A 5DC5A 4BZ5A 4Q3UA 5G1AA 1P8MA 3Q9EA 5G10A 2GH6A 5THUA 1R1OA 3MMRA 4MYFA 2VCGA 5G1BA 4RN1A 1T4TA 5DC8A 5EFJD 3EZPA 4RN0A 4A69A 3ZNRA 4LY1A 4QA3A 4RHMA 4GSMA 4RN2A 2VQJA 3F0RA 5G1CA 1C3SA 5IX0A 4RHIA 2VQMA 1ZPGA 1T4RA 2VQVA 3GN0A 3MFVA 4GSZA 5D1BA 5EEMA 4CEVA 3E8QA 3C0ZA 3MZ7A 3Q9FA 1VKGA 1TA1A 1ZZ3A 1T4PA 4BZ7A 5EFHA 3THEA 5THVA 5LI3A 1D3VA 5G3WA 3MZ4A 4Q42A 5G0YA 1ZZ1A 4Q3PA 3PZLA 3GMZA 3SKKA 4QA7A 1ZPEA 4BZ6A 4I06A 2VQOA 3KV2A 4IU0A 4ZUPA 3SFHA 3CEVA 4GWCA 4ZUMA 4CBYA 4IE1A 5D1DA 1WOHA 3C10A 4HZEA 1PQ3A 4LXZA 5EEFA 5CEVA 4Q3TA 3MFWA 3LP4A 1P8PA 1T67A 4IE2A 3SL1A 3THJA 4CQFA 1P8RA 3SL0A 1TBLA
chains in the Genus database with same CATH topology
3NIQA 4RHLA 1WOGA 4Q40A 1HQHA 3NIOA 5HJAA 2CEVA 2RLAA 4MYNA 1P8SA 2EF4A 3THHA 2PLLA 4IXUA 1P8NA 3LHLA 4IU4A 3E8ZA 3E9BA 1GQ7A 4FCKA 4IU5A 1T5FA 3RLAA 4IU1A 3M1RA 4GWDA 4MYKA 1XFKA 2AEBA 2PHOA 2EIVA 1HQFA 4Q3QA 4HXQA 1HQXA 4RLAA 1WOIA 4FCIA 3NIPA 3E6KA 4RHJA 4Q3RC 4ITYA 1RLAA 2EF5A 1WVAA 1HQ5A 1T4SA 4GSVA 5RLAA 1T5GA 1TBHA 1WVBA 4RHQA 3SJTA 2A0MA 4G3HA 1HQGA 4Q3SA 3LP7A 3TH7A 4DZ4A 4Q3VA 3DJ8A 1GQ6A 4IXVA 2PHAA 4RHKA 1P8QA 3F80A 4HWWA 1P8OA 1TBJA 2ZAVA 4MYLA 4Q3RA 4MXRA 3TF3A 4Q41A 3E6VA 5HJ9A 3MJLA 1CEVA 4IE3A 4Q3UA 1P8MA 1R1OA 3MMRA 4MYFA 1T4TA 4RHMA 4GSMA 4RHIA 1ZPGA 1T4RA 3GN0A 3MFVA 4GSZA 4CEVA 3E8QA 1TA1A 1T4PA 3THEA 1D3VA 4Q42A 4Q3PA 3PZLA 3GMZA 3SKKA 1ZPEA 4I06A 3KV2A 4IU0A 3CEVA 4GWCA 4IE1A 1WOHA 4HZEA 1PQ3A 5CEVA 4Q3TA 3MFWA 3LP4A 1P8PA 4IE2A 3SL1A 3THJA 1P8RA 3SL0A 1TBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NIQ A;  4RHL A;  1WOG A;  4Q40 A;  1HQH A;  3NIO A;  5HJA A;  2CEV A;  2RLA A;  4MYN A;  1P8S A;  2EF4 A;  3THH A;  2PLL A;  4IXU A;  1P8N A;  3LHL A;  4IU4 A;  3E8Z A;  3E9B A;  1GQ7 A;  4FCK A;  4IU5 A;  1T5F A;  3RLA A;  4IU1 A;  3M1R A;  4GWD A;  4MYK A;  1XFK A;  2AEB A;  2PHO A;  2EIV A;  1HQF A;  4Q3Q A;  4HXQ A;  1HQX A;  4RLA A;  1WOI A;  4FCI A;  3NIP A;  3E6K A;  4RHJ A;  4Q3R C;  4ITY A;  1RLA A;  2EF5 A;  1WVA A;  1HQ5 A;  1T4S A;  4GSV A;  5RLA A;  1T5G A;  1TBH A;  1WVB A;  4RHQ A;  3SJT A;  2A0M A;  4G3H A;  1HQG A;  4Q3S A;  3LP7 A;  3TH7 A;  4DZ4 A;  4Q3V A;  3DJ8 A;  1GQ6 A;  4IXV A;  2PHA A;  4RHK A;  1P8Q A;  3F80 A;  4HWW A;  1P8O A;  1TBJ A;  2ZAV A;  4MYL A;  4Q3R A;  4MXR A;  3TF3 A;  4Q41 A;  3E6V A;  5HJ9 A;  3MJL A;  1CEV A;  4IE3 A;  4Q3U A;  1P8M A;  1R1O A;  3MMR A;  4MYF A;  1T4T A;  4RHM A;  4GSM A;  4RHI A;  1ZPG A;  1T4R A;  3GN0 A;  3MFV A;  4GSZ A;  4CEV A;  3E8Q A;  1TA1 A;  1T4P A;  3THE A;  1D3V A;  4Q42 A;  4Q3P A;  3PZL A;  3GMZ A;  3SKK A;  1ZPE A;  4I06 A;  3KV2 A;  4IU0 A;  3CEV A;  4GWC A;  4IE1 A;  1WOH A;  4HZE A;  1PQ3 A;  5CEV A;  4Q3T A;  3MFW A;  3LP4 A;  1P8P A;  4IE2 A;  3SL1 A;  3THJ A;  1P8R A;  3SL0 A;  1TBL A; 
#chains in the Genus database with same CATH topology
 3NIQ A;  4RHL A;  2V5W A;  4ZUQ A;  1WOG A;  5BWZ A;  4Q40 A;  3Q9C A;  4BZ9 A;  1ZZ0 A;  4QA6 A;  1HQH A;  3NIO A;  5G0X A;  5HJA A;  2CEV A;  5A2S A;  1W22 A;  3EWF A;  2RLA A;  4MYN A;  1P8S A;  2EF4 A;  3THH A;  2PLL A;  5G0H A;  5G0I A;  3EW8 A;  4IXU A;  3F07 A;  5FCW A;  1P8N A;  3LHL A;  4IU4 A;  3E8Z A;  3E9B A;  1GQ7 A;  4FCK A;  4IU5 A;  1T5F A;  3RLA A;  4IU1 A;  5ICN B;  3M1R A;  4GWD A;  5EF7 A;  4MYK A;  5JI5 A;  4QA5 A;  1XFK A;  2AEB A;  5DC7 A;  5EEI A;  2PHO A;  2EIV A;  5EFK B;  1HQF A;  4Q3Q A;  4HXQ A;  2VQW G;  3F06 A;  4ZUN A;  1HQX A;  4RLA A;  1WOI A;  3MZ3 A;  3NIP A;  3E6K A;  4FCI A;  4RHJ A;  1C3R A;  4Q3R C;  4ITY A;  5G12 A;  1RLA A;  2EF5 A;  3Q9B A;  1WVA A;  1HQ5 A;  1T4S A;  2V5X A;  4GSV A;  1T5G A;  5EFG A;  5RLA A;  3SFF A;  1C3P A;  4CBT A;  5EEN A;  2VQQ A;  1TBH A;  1WVB A;  3EZT A;  4RHQ A;  3SJT A;  2A0M A;  4QA0 A;  4G3H A;  1HQG A;  3C0Y A;  4Q3S A;  3MZ6 A;  3LP7 A;  5THS A;  3ZNS A;  1T69 A;  3TH7 A;  5D1C A;  4DZ4 A;  4Q3V A;  5EF8 A;  3MAX A;  3DJ8 A;  1GQ6 A;  5EEK A;  5DC6 A;  4IXV A;  2PHA A;  4ZUO A;  5THT A;  5EFB D;  4RHK A;  1P8Q A;  3F80 A;  5IWG A;  4HWW A;  5G0G A;  5G17 A;  1P8O A;  1TBJ A;  5G13 A;  3RQD A;  2ZAV A;  4MYL A;  5EFN A;  4Q3R A;  5G11 A;  4MXR A;  4BKX B;  4QA4 A;  1T64 A;  4ZUR A;  3TF3 A;  3MEN A;  4Q41 A;  4QA1 A;  5G0J A;  3E6V A;  5HJ9 A;  4BZ8 A;  3MJL A;  5FUE A;  1CEV A;  4QA2 A;  4IE3 A;  5DC5 A;  4BZ5 A;  4Q3U A;  5G1A A;  1P8M A;  3Q9E A;  5G10 A;  2GH6 A;  5THU A;  1R1O A;  3MMR A;  4MYF A;  2VCG A;  5G1B A;  4RN1 A;  1T4T A;  5DC8 A;  5EFJ D;  3EZP A;  4RN0 A;  4A69 A;  3ZNR A;  4LY1 A;  4QA3 A;  4RHM A;  4GSM A;  4RN2 A;  2VQJ A;  3F0R A;  5G1C A;  1C3S A;  5IX0 A;  4RHI A;  2VQM A;  1ZPG A;  1T4R A;  2VQV A;  3GN0 A;  3MFV A;  4GSZ A;  5D1B A;  5EEM A;  4CEV A;  3E8Q A;  3C0Z A;  3MZ7 A;  3Q9F A;  1VKG A;  1TA1 A;  1ZZ3 A;  1T4P A;  4BZ7 A;  5EFH A;  3THE A;  5THV A;  5LI3 A;  1D3V A;  5G3W A;  3MZ4 A;  4Q42 A;  5G0Y A;  1ZZ1 A;  4Q3P A;  3PZL A;  3GMZ A;  3SKK A;  4QA7 A;  1ZPE A;  4BZ6 A;  4I06 A;  2VQO A;  3KV2 A;  4IU0 A;  4ZUP A;  3SFH A;  3CEV A;  4GWC A;  4ZUM A;  4CBY A;  4IE1 A;  5D1D A;  1WOH A;  3C10 A;  4HZE A;  1PQ3 A;  4LXZ A;  5EEF A;  5CEV A;  4Q3T A;  3MFW A;  3LP4 A;  1P8P A;  1T67 A;  4IE2 A;  3SL1 A;  3THJ A;  4CQF A;  1P8R A;  3SL0 A;  1TBL A; 
#chains in the Genus database with same CATH homology
 3NIQ A;  4RHL A;  1WOG A;  4Q40 A;  1HQH A;  3NIO A;  5HJA A;  2CEV A;  2RLA A;  4MYN A;  1P8S A;  2EF4 A;  3THH A;  2PLL A;  4IXU A;  1P8N A;  3LHL A;  4IU4 A;  3E8Z A;  3E9B A;  1GQ7 A;  4FCK A;  4IU5 A;  1T5F A;  3RLA A;  4IU1 A;  3M1R A;  4GWD A;  4MYK A;  1XFK A;  2AEB A;  2PHO A;  2EIV A;  1HQF A;  4Q3Q A;  4HXQ A;  1HQX A;  4RLA A;  1WOI A;  4FCI A;  3NIP A;  3E6K A;  4RHJ A;  4Q3R C;  4ITY A;  1RLA A;  2EF5 A;  1WVA A;  1HQ5 A;  1T4S A;  4GSV A;  5RLA A;  1T5G A;  1TBH A;  1WVB A;  4RHQ A;  3SJT A;  2A0M A;  4G3H A;  1HQG A;  4Q3S A;  3LP7 A;  3TH7 A;  4DZ4 A;  4Q3V A;  3DJ8 A;  1GQ6 A;  4IXV A;  2PHA A;  4RHK A;  1P8Q A;  3F80 A;  4HWW A;  1P8O A;  1TBJ A;  2ZAV A;  4MYL A;  4Q3R A;  4MXR A;  3TF3 A;  4Q41 A;  3E6V A;  5HJ9 A;  3MJL A;  1CEV A;  4IE3 A;  4Q3U A;  1P8M A;  1R1O A;  3MMR A;  4MYF A;  1T4T A;  4RHM A;  4GSM A;  4RHI A;  1ZPG A;  1T4R A;  3GN0 A;  3MFV A;  4GSZ A;  4CEV A;  3E8Q A;  1TA1 A;  1T4P A;  3THE A;  1D3V A;  4Q42 A;  4Q3P A;  3PZL A;  3GMZ A;  3SKK A;  1ZPE A;  4I06 A;  3KV2 A;  4IU0 A;  3CEV A;  4GWC A;  4IE1 A;  1WOH A;  4HZE A;  1PQ3 A;  5CEV A;  4Q3T A;  3MFW A;  3LP4 A;  1P8P A;  4IE2 A;  3SL1 A;  3THJ A;  1P8R A;  3SL0 A;  1TBL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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