1WWMA

Crystal structure of conserved hypothetical protein tt2028 from an extremely thermophilic bacterium thermus thermophilus hb8
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
180
structure length
180
Chain Sequence
EVPGLLEEIKALPLRLDEERFRFWLQQDYPFVEALYRYQVGLLLEAPQAHRAPLVQALMATVEELDWLLLQGASPSAPVHPVRAGYIALLEEMGRLPYAYRVVFFYFLNGLFLEAWAHHVPEEGPWAELSQHWFAPEFQAVLYDLEVLARGLWEDLDPEVVRTYLRRILEAEKATWSLLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords hypothetical protein TT2028
publication title Crystal Structure of TT2028 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 63
structure length 180
sequence length 180
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-01-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1wwmA00
1Z72A 1TO9A 3BJDA 2RD3A 4G99A 1WNVA 1OZWA 1T5PA 2Q4XA 1ULXA 2A2MA 4WWZA 3TGMA 1WOWA 2A2OA 4G7LA 1OZEA 3I9TA 4G7UA 1P3UA 4G8PA 2GM8A 1TYHA 1WOXA 1V8XA 1IW1A 1YAKA 1NI6A 2GM7A 2A6BA 4G7PA 5BTQA 1DVGA 2E7EA 1SK7A 4FN6A 1OZRA 4WD4A 1TO9B 3IBXA 2DY5A 1WZGA 4GOHA 4NY7A 1P3VA 3RM5A 4LQXA 1J02A 1OYKA 3MOOA 4G7TA 1DVEA 1WNWA 1IX4A 2Z68A 1VGIA 3I8RA 1WNXA 1RCWA 4GPFA 3DDEA 1P3TA 1TWRA 1YAFA 2ZVUA 1J2CA 1WZFA 1IX3A 2Q32A 1N45A 1IVJA 2QPPA 3CZYA 4GPCA 3B5PA 3K4FA 1S8CA 2QCXA 1OTVA 1WOVA 4GPHA 4G8WA 1WWMA 4MECA 1N3UA 1OYLA 1XJZA 3OQLA 1XK0A 3MVUA 4WX0A 1J77A 1IRMA 2F2GA 3HLXA 1IW0A 3HNHA 2RGZA 1TWNA 1WE1A 4G8UA 1OTWA 1WZDA 4RAJA 1XK1A 4WWJA 3HMLA 1XK2A 4WMHA 1UBBA 3NO6A 3I9UA 1OZLA 3B5OA 3HOKA 4G98A 2QZCA 1UDDA 1S13A 1RTWA 1XK3A
chains in the Genus database with same CATH superfamily
1Z72A 1TO9A 3BJDA 2RD3A 4G99A 1WNVA 1OZWA 1T5PA 2Q4XA 1ULXA 2A2MA 4WWZA 3TGMA 1WOWA 2A2OA 4G7LA 1OZEA 3I9TA 4G7UA 1P3UA 4G8PA 2GM8A 1TYHA 1WOXA 1V8XA 1IW1A 1YAKA 1NI6A 2GM7A 2A6BA 4G7PA 5BTQA 1DVGA 2E7EA 1SK7A 4FN6A 1OZRA 4WD4A 1TO9B 3IBXA 2DY5A 1WZGA 4GOHA 4NY7A 1P3VA 3RM5A 4LQXA 1J02A 1OYKA 2LCUA 3MOOA 4G7TA 1DVEA 1WNWA 1IX4A 2Z68A 1VGIA 3I8RA 1WNXA 1RCWA 4GPFA 3DDEA 1P3TA 1TWRA 1YAFA 2ZVUA 1J2CA 1WZFA 1IX3A 2Q32A 1N45A 1IVJA 2QPPA 3CZYA 4GPCA 3B5PA 3K4FA 1S8CA 2QCXA 1OTVA 1WOVA 4GPHA 4G8WA 1WWMA 4MECA 1N3UA 1OYLA 1XJZA 3OQLA 1XK0A 3MVUA 4WX0A 1J77A 1IRMA 2F2GA 3HLXA 1IW0A 3HNHA 2RGZA 1TWNA 1WE1A 4G8UA 1OTWA 1WZDA 4RAJA 1XK1A 4WWJA 3HMLA 1XK2A 4WMHA 1UBBA 3NO6A 3I9UA 1OZLA 3B5OA 3HOKA 4G98A 2QZCA 1UDDA 1S13A 1RTWA 1XK3A
chains in the Genus database with same CATH topology
1Z72A 1TO9A 3BJDA 2RD3A 4G99A 1WNVA 1OZWA 1T5PA 2Q4XA 1ULXA 2A2MA 4WWZA 3TGMA 1WOWA 2A2OA 4G7LA 1OZEA 3I9TA 4G7UA 1P3UA 4G8PA 2GM8A 1TYHA 1WOXA 1V8XA 1IW1A 1YAKA 1NI6A 2GM7A 2A6BA 4G7PA 5BTQA 1DVGA 2E7EA 1SK7A 4FN6A 1OZRA 4WD4A 1TO9B 3IBXA 2DY5A 1WZGA 4GOHA 4NY7A 1P3VA 3RM5A 4LQXA 1J02A 1OYKA 3MOOA 4G7TA 1DVEA 1WNWA 1IX4A 2Z68A 1VGIA 3I8RA 1WNXA 1RCWA 4GPFA 3DDEA 1P3TA 1TWRA 1YAFA 2ZVUA 1J2CA 1WZFA 1IX3A 2Q32A 1N45A 1IVJA 2QPPA 3CZYA 4GPCA 3B5PA 3K4FA 1S8CA 2QCXA 1OTVA 1WOVA 4GPHA 4G8WA 1WWMA 4MECA 1N3UA 1OYLA 1XJZA 3OQLA 1XK0A 3MVUA 4WX0A 1J77A 1IRMA 2F2GA 3HLXA 1IW0A 3HNHA 2RGZA 1TWNA 1WE1A 4G8UA 1OTWA 1WZDA 4RAJA 1XK1A 4WWJA 3HMLA 1XK2A 4WMHA 1UBBA 3NO6A 3I9UA 1OZLA 3B5OA 3HOKA 4G98A 2QZCA 1UDDA 1S13A 1RTWA 1XK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z72 A;  1TO9 A;  3BJD A;  2RD3 A;  4G99 A;  1WNV A;  1OZW A;  1T5P A;  2Q4X A;  1ULX A;  2A2M A;  4WWZ A;  3TGM A;  1WOW A;  2A2O A;  4G7L A;  1OZE A;  3I9T A;  4G7U A;  1P3U A;  4G8P A;  2GM8 A;  1TYH A;  1WOX A;  1V8X A;  1IW1 A;  1YAK A;  1NI6 A;  2GM7 A;  2A6B A;  4G7P A;  5BTQ A;  1DVG A;  2E7E A;  1SK7 A;  4FN6 A;  1OZR A;  4WD4 A;  1TO9 B;  3IBX A;  2DY5 A;  1WZG A;  4GOH A;  4NY7 A;  1P3V A;  3RM5 A;  4LQX A;  1J02 A;  1OYK A;  3MOO A;  4G7T A;  1DVE A;  1WNW A;  1IX4 A;  2Z68 A;  1VGI A;  3I8R A;  1WNX A;  1RCW A;  4GPF A;  3DDE A;  1P3T A;  1TWR A;  1YAF A;  2ZVU A;  1J2C A;  1WZF A;  1IX3 A;  2Q32 A;  1N45 A;  1IVJ A;  2QPP A;  3CZY A;  4GPC A;  3B5P A;  3K4F A;  1S8C A;  2QCX A;  1OTV A;  1WOV A;  4GPH A;  4G8W A;  1WWM A;  4MEC A;  1N3U A;  1OYL A;  1XJZ A;  3OQL A;  1XK0 A;  3MVU A;  4WX0 A;  1J77 A;  1IRM A;  2F2G A;  3HLX A;  1IW0 A;  3HNH A;  2RGZ A;  1TWN A;  1WE1 A;  4G8U A;  1OTW A;  1WZD A;  4RAJ A;  1XK1 A;  4WWJ A;  3HML A;  1XK2 A;  4WMH A;  1UBB A;  3NO6 A;  3I9U A;  1OZL A;  3B5O A;  3HOK A;  4G98 A;  2QZC A;  1UDD A;  1S13 A;  1RTW A;  1XK3 A; 
#chains in the Genus database with same CATH topology
 1Z72 A;  1TO9 A;  3BJD A;  2RD3 A;  4G99 A;  1WNV A;  1OZW A;  1T5P A;  2Q4X A;  1ULX A;  2A2M A;  4WWZ A;  3TGM A;  1WOW A;  2A2O A;  4G7L A;  1OZE A;  3I9T A;  4G7U A;  1P3U A;  4G8P A;  2GM8 A;  1TYH A;  1WOX A;  1V8X A;  1IW1 A;  1YAK A;  1NI6 A;  2GM7 A;  2A6B A;  4G7P A;  5BTQ A;  1DVG A;  2E7E A;  1SK7 A;  4FN6 A;  1OZR A;  4WD4 A;  1TO9 B;  3IBX A;  2DY5 A;  1WZG A;  4GOH A;  4NY7 A;  1P3V A;  3RM5 A;  4LQX A;  1J02 A;  1OYK A;  2LCU A;  3MOO A;  4G7T A;  1DVE A;  1WNW A;  1IX4 A;  2Z68 A;  1VGI A;  3I8R A;  1WNX A;  1RCW A;  4GPF A;  3DDE A;  1P3T A;  1TWR A;  1YAF A;  2ZVU A;  1J2C A;  1WZF A;  1IX3 A;  2Q32 A;  1N45 A;  1IVJ A;  2QPP A;  3CZY A;  4GPC A;  3B5P A;  3K4F A;  1S8C A;  2QCX A;  1OTV A;  1WOV A;  4GPH A;  4G8W A;  1WWM A;  4MEC A;  1N3U A;  1OYL A;  1XJZ A;  3OQL A;  1XK0 A;  3MVU A;  4WX0 A;  1J77 A;  1IRM A;  2F2G A;  3HLX A;  1IW0 A;  3HNH A;  2RGZ A;  1TWN A;  1WE1 A;  4G8U A;  1OTW A;  1WZD A;  4RAJ A;  1XK1 A;  4WWJ A;  3HML A;  1XK2 A;  4WMH A;  1UBB A;  3NO6 A;  3I9U A;  1OZL A;  3B5O A;  3HOK A;  4G98 A;  2QZC A;  1UDD A;  1S13 A;  1RTW A;  1XK3 A; 
#chains in the Genus database with same CATH homology
 1Z72 A;  1TO9 A;  3BJD A;  2RD3 A;  4G99 A;  1WNV A;  1OZW A;  1T5P A;  2Q4X A;  1ULX A;  2A2M A;  4WWZ A;  3TGM A;  1WOW A;  2A2O A;  4G7L A;  1OZE A;  3I9T A;  4G7U A;  1P3U A;  4G8P A;  2GM8 A;  1TYH A;  1WOX A;  1V8X A;  1IW1 A;  1YAK A;  1NI6 A;  2GM7 A;  2A6B A;  4G7P A;  5BTQ A;  1DVG A;  2E7E A;  1SK7 A;  4FN6 A;  1OZR A;  4WD4 A;  1TO9 B;  3IBX A;  2DY5 A;  1WZG A;  4GOH A;  4NY7 A;  1P3V A;  3RM5 A;  4LQX A;  1J02 A;  1OYK A;  3MOO A;  4G7T A;  1DVE A;  1WNW A;  1IX4 A;  2Z68 A;  1VGI A;  3I8R A;  1WNX A;  1RCW A;  4GPF A;  3DDE A;  1P3T A;  1TWR A;  1YAF A;  2ZVU A;  1J2C A;  1WZF A;  1IX3 A;  2Q32 A;  1N45 A;  1IVJ A;  2QPP A;  3CZY A;  4GPC A;  3B5P A;  3K4F A;  1S8C A;  2QCX A;  1OTV A;  1WOV A;  4GPH A;  4G8W A;  1WWM A;  4MEC A;  1N3U A;  1OYL A;  1XJZ A;  3OQL A;  1XK0 A;  3MVU A;  4WX0 A;  1J77 A;  1IRM A;  2F2G A;  3HLX A;  1IW0 A;  3HNH A;  2RGZ A;  1TWN A;  1WE1 A;  4G8U A;  1OTW A;  1WZD A;  4RAJ A;  1XK1 A;  4WWJ A;  3HML A;  1XK2 A;  4WMH A;  1UBB A;  3NO6 A;  3I9U A;  1OZL A;  3B5O A;  3HOK A;  4G98 A;  2QZC A;  1UDD A;  1S13 A;  1RTW A;  1XK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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