1WWRA

Crystal structure of trna adenosine deaminase tada from aquifex aeolicus
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
154
structure length
154
Chain Sequence
GSHMGKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKKLRNNII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords tRNA adenosine deaminase TadA
publication title Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 54
structure length 154
sequence length 154
chains with identical sequence B, C, D
ec nomenclature ec 3.5.4.33: tRNA(adenine(34)) deaminase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1wwrA00
5M59B 3OJ6A 1ZABA 1VQ2A 1Z3AA 2RPZA 2D30A 4ZD4A 2NX8A 1UWZA 2A8NA 3OCQA 1CTTA 3G8QA 4G3MA 2Z3IA 4LC5A 1AF2A 3RZVA 4HRQA 4K1RA 4P9EA 4I43B 4NQLA 2O96A 3R2NA 2OG4A 4P9CA 4MSJA 4LCOA 2Z3JA 5DCAJ 1MQ0A 5M52C 2KKSA 2O7PA 4OCNB 3E1UA 4EG2A 4OCNA 4O8XB 3ZPCA 4O8XA 3DH1A 2Z3GA 2PW9A 2G6VA 3RZUA 2W4LA 4JXEA 1UX1A 1CTUA 4D10F 4P9DA 2ZNVA 4LCNA 2Z3HA 1YSDA 1UX0A 2HXVA 2OBCA 4OCLB 2QLCA 4OCLA 4MSQA 2O3KA 2FR5A 2ZNRA 4E0QA 4F3WA 2G84A 4F7OA 1JTKA 4ZFRA 1WKQA 3DMOA 2NYTA 4WIFA 3B8FA 2B3ZA 4LCPA 3SBGA 2P87A 3EX8A 4O8YB 4O8YA 2FR6A 5CW6A 1OI0A 4LD4A 1WN5A 4ILGC 4PQTA 5GAOA 1UAQA 3MPZA 2HVWA 1WN6A 1R5XA 3IJFX 1ALNA 4KITC 4OCMB 2P8RA 2KCQA 4OCMA 4WIGA 1R5TA 2HVVA 3ZEFB 4ZFTA 4ZD5A 4MS7A 1YSBA 1WWRA 5C2OA 1TIYA 4HRWA 4OWPB 2O95A 4BGDC 1P6OA 2B3JA 4OWPA 1RB7A 4MSDA 4LD2A 3ZPGA 4QFTA 2D5NA 1OX7A 4MSMA
chains in the Genus database with same CATH superfamily
5M59B 3OJ6A 1ZABA 1VQ2A 1Z3AA 2RPZA 2D30A 4ZD4A 2NX8A 1UWZA 2A8NA 3OCQA 1CTTA 3G8QA 4G3MA 2Z3IA 4LC5A 1AF2A 3RZVA 1M9NA 1THZA 4HRQA 4K1RA 1P4RA 1PL0A 4P9EA 4I43B 4NQLA 2O96A 3R2NA 2OG4A 4P9CA 4MSJA 4LCOA 2Z3JA 5DCAJ 1MQ0A 3ZZMA 5M52C 2KKSA 2O7PA 4OCNB 3E1UA 4EG2A 2IU0A 4OCNA 2IU3A 4O8XB 3ZPCA 4O8XA 3DH1A 2Z3GA 2PW9A 2G6VA 3RZUA 2W4LA 1VK9A 4JXEA 1UX1A 1CTUA 4D10F 4P9DA 2ZNVA 1ZCZA 4LCNA 2Z3HA 1YSDA 1UX0A 2HXVA 2OBCA 4OCLB 2QLCA 4OCLA 4MSQA 2O3KA 2FR5A 2B1IA 2ZNRA 4E0QA 1OZ0A 4F3WA 2G84A 4F7OA 1JTKA 4ZFRA 1WKQA 3DMOA 2NYTA 4WIFA 3B8FA 2B3ZA 4LCPA 3SBGA 2P87A 3EX8A 4O8YB 4O8YA 2FR6A 5CW6A 1OI0A 4LD4A 1WN5A 4ILGC 4PQTA 5GAOA 1UAQA 4EHIA 2HVWA 3MPZA 1WN6A 1R5XA 3IJFX 3VX8A 1G8MA 1PKXA 3BH1A 1ALNA 4KITC 4OCMB 2P8RA 2KCQA 4J6EA 4OCMA 4WIGA 1R5TA 2HVVA 3ZEFB 4ZFTA 4ZD5A 4MS7A 1YSBA 1WWRA 5C2OA 1TIYA 4HRWA 4OWPB 2O95A 4A1OA 1P6OA 4GGMX 4OWPA 1RB7A 4MSDA 4BGDC 2B3JA 4LD2A 3ZPGA 4QFTA 2D5NA 1OX7A 4MSMA 2B1GA
chains in the Genus database with same CATH topology
5M59B 3OJ6A 1ZABA 1VQ2A 1Z3AA 2RPZA 2D30A 4ZD4A 2NX8A 1UWZA 2A8NA 3OCQA 1CTTA 3G8QA 4G3MA 2Z3IA 4LC5A 1AF2A 3RZVA 4HRQA 4K1RA 4P9EA 4I43B 4NQLA 2O96A 3R2NA 2OG4A 4P9CA 4MSJA 4LCOA 2Z3JA 5DCAJ 1MQ0A 5M52C 2KKSA 2O7PA 4OCNB 3E1UA 4EG2A 4OCNA 4O8XB 3ZPCA 4O8XA 3DH1A 2Z3GA 2PW9A 2G6VA 3RZUA 2W4LA 4JXEA 1UX1A 1CTUA 4D10F 4P9DA 2ZNVA 4LCNA 2Z3HA 1YSDA 1UX0A 2HXVA 2OBCA 4OCLB 2QLCA 4OCLA 4MSQA 2O3KA 2FR5A 2ZNRA 4E0QA 4F3WA 2G84A 4F7OA 1JTKA 4ZFRA 1WKQA 3DMOA 2NYTA 4WIFA 3B8FA 2B3ZA 4LCPA 3SBGA 2P87A 3EX8A 4O8YB 4O8YA 2FR6A 5CW6A 1OI0A 4LD4A 1WN5A 4ILGC 4PQTA 5GAOA 1UAQA 3MPZA 2HVWA 1WN6A 1R5XA 3IJFX 1ALNA 4KITC 4OCMB 2P8RA 2KCQA 4OCMA 4WIGA 1R5TA 2HVVA 3ZEFB 4ZFTA 4ZD5A 4MS7A 1YSBA 1WWRA 5C2OA 1TIYA 4HRWA 4OWPB 2O95A 4BGDC 1P6OA 2B3JA 4OWPA 1RB7A 4MSDA 4LD2A 3ZPGA 4QFTA 2D5NA 1OX7A 4MSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M59 B;  3OJ6 A;  1ZAB A;  1VQ2 A;  1Z3A A;  2RPZ A;  2D30 A;  4ZD4 A;  2NX8 A;  1UWZ A;  2A8N A;  3OCQ A;  1CTT A;  3G8Q A;  4G3M A;  2Z3I A;  4LC5 A;  1AF2 A;  3RZV A;  4HRQ A;  4K1R A;  4P9E A;  4I43 B;  4NQL A;  2O96 A;  3R2N A;  2OG4 A;  4P9C A;  4MSJ A;  4LCO A;  2Z3J A;  5DCA J;  1MQ0 A;  5M52 C;  2KKS A;  2O7P A;  4OCN B;  3E1U A;  4EG2 A;  4OCN A;  4O8X B;  3ZPC A;  4O8X A;  3DH1 A;  2Z3G A;  2PW9 A;  2G6V A;  3RZU A;  2W4L A;  4JXE A;  1UX1 A;  1CTU A;  4D10 F;  4P9D A;  2ZNV A;  4LCN A;  2Z3H A;  1YSD A;  1UX0 A;  2HXV A;  2OBC A;  4OCL B;  2QLC A;  4OCL A;  4MSQ A;  2O3K A;  2FR5 A;  2ZNR A;  4E0Q A;  4F3W A;  2G84 A;  4F7O A;  1JTK A;  4ZFR A;  1WKQ A;  3DMO A;  2NYT A;  4WIF A;  3B8F A;  2B3Z A;  4LCP A;  3SBG A;  2P87 A;  3EX8 A;  4O8Y B;  4O8Y A;  2FR6 A;  5CW6 A;  1OI0 A;  4LD4 A;  1WN5 A;  4ILG C;  4PQT A;  5GAO A;  1UAQ A;  3MPZ A;  2HVW A;  1WN6 A;  1R5X A;  3IJF X;  1ALN A;  4KIT C;  4OCM B;  2P8R A;  2KCQ A;  4OCM A;  4WIG A;  1R5T A;  2HVV A;  3ZEF B;  4ZFT A;  4ZD5 A;  4MS7 A;  1YSB A;  1WWR A;  5C2O A;  1TIY A;  4HRW A;  4OWP B;  2O95 A;  4BGD C;  1P6O A;  2B3J A;  4OWP A;  1RB7 A;  4MSD A;  4LD2 A;  3ZPG A;  4QFT A;  2D5N A;  1OX7 A;  4MSM A; 
#chains in the Genus database with same CATH topology
 5M59 B;  3OJ6 A;  1ZAB A;  1VQ2 A;  1Z3A A;  2RPZ A;  2D30 A;  4ZD4 A;  2NX8 A;  1UWZ A;  2A8N A;  3OCQ A;  1CTT A;  3G8Q A;  4G3M A;  2Z3I A;  4LC5 A;  1AF2 A;  3RZV A;  1M9N A;  1THZ A;  4HRQ A;  4K1R A;  1P4R A;  1PL0 A;  4P9E A;  4I43 B;  4NQL A;  2O96 A;  3R2N A;  2OG4 A;  4P9C A;  4MSJ A;  4LCO A;  2Z3J A;  5DCA J;  1MQ0 A;  3ZZM A;  5M52 C;  2KKS A;  2O7P A;  4OCN B;  3E1U A;  4EG2 A;  2IU0 A;  4OCN A;  2IU3 A;  4O8X B;  3ZPC A;  4O8X A;  3DH1 A;  2Z3G A;  2PW9 A;  2G6V A;  3RZU A;  2W4L A;  1VK9 A;  4JXE A;  1UX1 A;  1CTU A;  4D10 F;  4P9D A;  2ZNV A;  1ZCZ A;  4LCN A;  2Z3H A;  1YSD A;  1UX0 A;  2HXV A;  2OBC A;  4OCL B;  2QLC A;  4OCL A;  4MSQ A;  2O3K A;  2FR5 A;  2B1I A;  2ZNR A;  4E0Q A;  1OZ0 A;  4F3W A;  2G84 A;  4F7O A;  1JTK A;  4ZFR A;  1WKQ A;  3DMO A;  2NYT A;  4WIF A;  3B8F A;  2B3Z A;  4LCP A;  3SBG A;  2P87 A;  3EX8 A;  4O8Y B;  4O8Y A;  2FR6 A;  5CW6 A;  1OI0 A;  4LD4 A;  1WN5 A;  4ILG C;  4PQT A;  5GAO A;  1UAQ A;  4EHI A;  2HVW A;  3MPZ A;  1WN6 A;  1R5X A;  3IJF X;  3VX8 A;  1G8M A;  1PKX A;  3BH1 A;  1ALN A;  4KIT C;  4OCM B;  2P8R A;  2KCQ A;  4J6E A;  4OCM A;  4WIG A;  1R5T A;  2HVV A;  3ZEF B;  4ZFT A;  4ZD5 A;  4MS7 A;  1YSB A;  1WWR A;  5C2O A;  1TIY A;  4HRW A;  4OWP B;  2O95 A;  4A1O A;  1P6O A;  4GGM X;  4OWP A;  1RB7 A;  4MSD A;  4BGD C;  2B3J A;  4LD2 A;  3ZPG A;  4QFT A;  2D5N A;  1OX7 A;  4MSM A;  2B1G A; 
#chains in the Genus database with same CATH homology
 5M59 B;  3OJ6 A;  1ZAB A;  1VQ2 A;  1Z3A A;  2RPZ A;  2D30 A;  4ZD4 A;  2NX8 A;  1UWZ A;  2A8N A;  3OCQ A;  1CTT A;  3G8Q A;  4G3M A;  2Z3I A;  4LC5 A;  1AF2 A;  3RZV A;  4HRQ A;  4K1R A;  4P9E A;  4I43 B;  4NQL A;  2O96 A;  3R2N A;  2OG4 A;  4P9C A;  4MSJ A;  4LCO A;  2Z3J A;  5DCA J;  1MQ0 A;  5M52 C;  2KKS A;  2O7P A;  4OCN B;  3E1U A;  4EG2 A;  4OCN A;  4O8X B;  3ZPC A;  4O8X A;  3DH1 A;  2Z3G A;  2PW9 A;  2G6V A;  3RZU A;  2W4L A;  4JXE A;  1UX1 A;  1CTU A;  4D10 F;  4P9D A;  2ZNV A;  4LCN A;  2Z3H A;  1YSD A;  1UX0 A;  2HXV A;  2OBC A;  4OCL B;  2QLC A;  4OCL A;  4MSQ A;  2O3K A;  2FR5 A;  2ZNR A;  4E0Q A;  4F3W A;  2G84 A;  4F7O A;  1JTK A;  4ZFR A;  1WKQ A;  3DMO A;  2NYT A;  4WIF A;  3B8F A;  2B3Z A;  4LCP A;  3SBG A;  2P87 A;  3EX8 A;  4O8Y B;  4O8Y A;  2FR6 A;  5CW6 A;  1OI0 A;  4LD4 A;  1WN5 A;  4ILG C;  4PQT A;  5GAO A;  1UAQ A;  3MPZ A;  2HVW A;  1WN6 A;  1R5X A;  3IJF X;  1ALN A;  4KIT C;  4OCM B;  2P8R A;  2KCQ A;  4OCM A;  4WIG A;  1R5T A;  2HVV A;  3ZEF B;  4ZFT A;  4ZD5 A;  4MS7 A;  1YSB A;  1WWR A;  5C2O A;  1TIY A;  4HRW A;  4OWP B;  2O95 A;  4BGD C;  1P6O A;  2B3J A;  4OWP A;  1RB7 A;  4MSD A;  4LD2 A;  3ZPG A;  4QFT A;  2D5N A;  1OX7 A;  4MSM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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