1WXLA

Solution structure of the hmg-box domain in the ssrp1 subunit of fact
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
73
structure length
73
Chain Sequence
SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRNYKPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Single-strand recognition protein
publication title Solution structure of the HMG-box domain in the SSRP1 subunit of FACT
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 16
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2005-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 1wxlA00
1HRZA 2CRJA 2LE4A 3U2BC 2YRQA 1NHNA 2EQZA 1L8ZA 2LEFA 1I11A 1V63A 3FGHA 1L8YA 2CO9A 1J5NA 1WXLA 2LY4A 1J46A 1HMEA 1QRVA 2D7LA 1GT0D 1AABA 1J3DA 2GZKA 1E7JA 1WZ6A 2HDZA 1LWMA 2LHJA 2YUKA 4EUWA 2YQIA 1J3XA 1HMFA 1WGFA 2RTUA 1V64A 1HRYA 2CTOA 1HSMA 3TQ6A 1CG7A 1CKTA 3NM9A 1J3CA 4A3NA 3TMMA 1HSNA 1HMAA 4S2QD 2E6OA 4QR9A 2CS1A 1J47A 4NODA 1O4XB 4NNUA 2YULA 1K99A 4Y60C 3F27D 1NHMA
chains in the Genus database with same CATH superfamily
1HRZA 2CRJA 2LE4A 4A15A 3U2BC 2YRQA 1NHNA 2EQZA 3ABRB 1L8ZA 5H8WA 2LEFA 1I11A 1V63A 3FGHA 1L8YA 2CO9A 1J5NA 1WXLA 2LY4A 1J46A 1HMEA 1QRVA 2D7LA 1GT0D 1AABA 1J3DA 4KQEA 2GZKA 1E7JA 1WZ6A 2HDZA 1LWMA 2LHJA 2YUKA 4EUWA 2YQIA 1J3XA 1HMFA 1WGFA 2RTUA 1V64A 1HRYA 2CTOA 1HSMA 3TQ6A 1CG7A 1CKTA 3ABSB 3NM9A 1J3CA 3AO0B 4A3NA 3ANYB 3TMMA 1HSNA 1HMAA 4S2QD 2E6OA 4QR9A 2CS1A 1J47A 4NODA 1O4XB 4NNUA 2YULA 1K99A 3ABOB 4Y60C 2VSFA 3F27D 1NHMA
chains in the Genus database with same CATH topology
1HRZA 2CRJA 2LE4A 3U2BC 2YRQA 1NHNA 2EQZA 1L8ZA 2LEFA 1I11A 1V63A 3FGHA 1L8YA 2CO9A 1J5NA 1WXLA 2LY4A 1J46A 1HMEA 1QRVA 2D7LA 1GT0D 1AABA 1J3DA 2GZKA 1E7JA 1WZ6A 2HDZA 1LWMA 2LHJA 2YUKA 4EUWA 2YQIA 1J3XA 1HMFA 1WGFA 2RTUA 1V64A 1HRYA 2CTOA 1HSMA 3TQ6A 1CG7A 1CKTA 3NM9A 1J3CA 4A3NA 3TMMA 1HSNA 1HMAA 4S2QD 2E6OA 4QR9A 2CS1A 1J47A 4NODA 1O4XB 4NNUA 2YULA 1K99A 4Y60C 3F27D 1NHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HRZ A;  2CRJ A;  2LE4 A;  3U2B C;  2YRQ A;  1NHN A;  2EQZ A;  1L8Z A;  2LEF A;  1I11 A;  1V63 A;  3FGH A;  1L8Y A;  2CO9 A;  1J5N A;  1WXL A;  2LY4 A;  1J46 A;  1HME A;  1QRV A;  2D7L A;  1GT0 D;  1AAB A;  1J3D A;  2GZK A;  1E7J A;  1WZ6 A;  2HDZ A;  1LWM A;  2LHJ A;  2YUK A;  4EUW A;  2YQI A;  1J3X A;  1HMF A;  1WGF A;  2RTU A;  1V64 A;  1HRY A;  2CTO A;  1HSM A;  3TQ6 A;  1CG7 A;  1CKT A;  3NM9 A;  1J3C A;  4A3N A;  3TMM A;  1HSN A;  1HMA A;  4S2Q D;  2E6O A;  4QR9 A;  2CS1 A;  1J47 A;  4NOD A;  1O4X B;  4NNU A;  2YUL A;  1K99 A;  4Y60 C;  3F27 D;  1NHM A; 
#chains in the Genus database with same CATH topology
 1HRZ A;  2CRJ A;  2LE4 A;  4A15 A;  3U2B C;  2YRQ A;  1NHN A;  2EQZ A;  3ABR B;  1L8Z A;  5H8W A;  2LEF A;  1I11 A;  1V63 A;  3FGH A;  1L8Y A;  2CO9 A;  1J5N A;  1WXL A;  2LY4 A;  1J46 A;  1HME A;  1QRV A;  2D7L A;  1GT0 D;  1AAB A;  1J3D A;  4KQE A;  2GZK A;  1E7J A;  1WZ6 A;  2HDZ A;  1LWM A;  2LHJ A;  2YUK A;  4EUW A;  2YQI A;  1J3X A;  1HMF A;  1WGF A;  2RTU A;  1V64 A;  1HRY A;  2CTO A;  1HSM A;  3TQ6 A;  1CG7 A;  1CKT A;  3ABS B;  3NM9 A;  1J3C A;  3AO0 B;  4A3N A;  3ANY B;  3TMM A;  1HSN A;  1HMA A;  4S2Q D;  2E6O A;  4QR9 A;  2CS1 A;  1J47 A;  4NOD A;  1O4X B;  4NNU A;  2YUL A;  1K99 A;  3ABO B;  4Y60 C;  2VSF A;  3F27 D;  1NHM A; 
#chains in the Genus database with same CATH homology
 1HRZ A;  2CRJ A;  2LE4 A;  3U2B C;  2YRQ A;  1NHN A;  2EQZ A;  1L8Z A;  2LEF A;  1I11 A;  1V63 A;  3FGH A;  1L8Y A;  2CO9 A;  1J5N A;  1WXL A;  2LY4 A;  1J46 A;  1HME A;  1QRV A;  2D7L A;  1GT0 D;  1AAB A;  1J3D A;  2GZK A;  1E7J A;  1WZ6 A;  2HDZ A;  1LWM A;  2LHJ A;  2YUK A;  4EUW A;  2YQI A;  1J3X A;  1HMF A;  1WGF A;  2RTU A;  1V64 A;  1HRY A;  2CTO A;  1HSM A;  3TQ6 A;  1CG7 A;  1CKT A;  3NM9 A;  1J3C A;  4A3N A;  3TMM A;  1HSN A;  1HMA A;  4S2Q D;  2E6O A;  4QR9 A;  2CS1 A;  1J47 A;  4NOD A;  1O4X B;  4NNU A;  2YUL A;  1K99 A;  4Y60 C;  3F27 D;  1NHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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