The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
118
|
sequence length |
311
|
structure length |
311
|
Chain Sequence |
MNPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLDVKKLKEKPLALQRRVIRKFIGEKDYEKVELVRSLLEKGGEVNLGKGKVLKRKERWL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain.
pubmed doi rcsb |
| source organism |
Aquifex aeolicus
|
| molecule tags |
Translation
|
| molecule keywords |
Hypothetical UPF0072 protein AQ_1887
|
| total genus |
118
|
| structure length |
311
|
| sequence length |
311
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.3.4.19: tRNA(Ile)-lysidine synthetase. |
| pdb deposition date | 2005-02-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01171 | ATP_bind_3 | PP-loop family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Chorismate Mutase Domain, subunit A | Chorismate Mutase Domain, subunit A | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs |
