1WYLA

Solution structure of the ch domain of human nedd9 interacting protein with calponin homology and lim domains
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
116
structure length
116
Chain Sequence
GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords NEDD9 interacting protein with calponin homology and LIM dom
publication title Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains
rcsb
source organism Homo sapiens
total genus 22
structure length 116
sequence length 116
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2005-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wylA01
1AA2A 1QAGA 2D86A 1PXYA 1UEGA 1WJOA 2WA7A 5A38A 3KMWB 1V5KA 1MB8A 1P5SA 3HOPA 3CO1A 1TJTA 2VZDA 2WA6A 2L3GA 4EDMA 3F7PA 5A4BA 1PA7A 4B7LA 2YRNA 1SH5A 1UJOA 1WYNA 3KMUB 1DXXA 1WIXA 3HOCA 5A36A 3JARM 5J8EA 4EDNA 1WYPA 2K3SA 2EE7A 4Q57B 3I6XA 3KY9A 2VZIB 4TXKA 1AOAA 3JAKM 2JV9A 2WA5A 2WFNA 3JALM 3REPB 2D87A 5L0OA 1WYOA 2RR8A 1WKUA 2D88A 2R8UA 2VZGB 2VZCA 4EDLA 2R0OA 1H67A 5A37A 4TXIA 1VKAA 2D89A 2DK9A 2E9KA 1BKRA 2EYNA 2K2RA 1RT8A 4Q59A 2EYIA 1P2XA 1WYQA 4Q58A 2QJZA 1WYLA 1SH6A 3FERA 2D85A 1WYRA 3HORA 5BVRA 1BHDA 2QJXA 1WYMA
chains in the Genus database with same CATH superfamily
2IGPA 1AA2A 1QAGA 2D86A 2EQOA 1PXYA 1UEGA 1WJOA 2WA7A 5A38A 3KMWB 1V5KA 4DDPA 1MB8A 1P5SA 3HOPA 3CO1A 1TJTA 2WE6A 2HL9A 2HL8A 2VZDA 2WA6A 2L3GA 4EDMA 3F7PA 5A4BA 1PA7A 4B7LA 2YRNA 1SH5A 4LVPA 1UJOA 4LVRA 5FMUA 1WYNA 3KMUB 2WDTA 1DXXA 1WIXA 3HOCA 5A36A 3JARM 5J8EA 4EDNA 1WYPA 2K3SA 2EE7A 4Q57B 3I6XA 3KY9A 2VZIB 2HKPA 4TXKA 1AOAA 3JAKM 2JV9A 2WA5A 2WFNA 3JALM 3REPB 3EAYA 2D87A 5L0OA 1WYOA 2RR8A 1WKUA 2D88A 2R8UA 2VZGB 2VZCA 4EDLA 2R0OA 1H67A 5A37A 4TXIA 5FMTA 1VKAA 2D89A 2DK9A 2E9KA 1BKRA 2EYNA 2K2RA 1RT8A 4Q59A 2EYIA 3VP7A 1P2XA 1WYQA 4Q58A 1EUVA 2QJZA 1WYLA 1SH6A 3FERA 2D85A 1WYRA 3HORA 2VE7A 2VE7C 5BVRA 1BHDA 2QJXA 1WYMA
chains in the Genus database with same CATH topology
1AA2A 1QAGA 2D86A 1PXYA 1UEGA 1WJOA 2WA7A 5A38A 3KMWB 1V5KA 1MB8A 1P5SA 3HOPA 3CO1A 1TJTA 2VZDA 2WA6A 2L3GA 4EDMA 3F7PA 5A4BA 1PA7A 4B7LA 2YRNA 1SH5A 1UJOA 1WYNA 3KMUB 1DXXA 1WIXA 3HOCA 5A36A 3JARM 5J8EA 4EDNA 1WYPA 2K3SA 2EE7A 4Q57B 3I6XA 3KY9A 2VZIB 4TXKA 1AOAA 3JAKM 2JV9A 2WA5A 2WFNA 3JALM 3REPB 2D87A 5L0OA 1WYOA 2RR8A 1WKUA 2D88A 2R8UA 2VZGB 2VZCA 4EDLA 2R0OA 1H67A 5A37A 4TXIA 1VKAA 2D89A 2DK9A 2E9KA 1BKRA 2EYNA 2K2RA 1RT8A 4Q59A 2EYIA 1P2XA 1WYQA 4Q58A 2QJZA 1WYLA 1SH6A 3FERA 2D85A 1WYRA 3HORA 5BVRA 1BHDA 2QJXA 1WYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AA2 A;  1QAG A;  2D86 A;  1PXY A;  1UEG A;  1WJO A;  2WA7 A;  5A38 A;  3KMW B;  1V5K A;  1MB8 A;  1P5S A;  3HOP A;  3CO1 A;  1TJT A;  2VZD A;  2WA6 A;  2L3G A;  4EDM A;  3F7P A;  5A4B A;  1PA7 A;  4B7L A;  2YRN A;  1SH5 A;  1UJO A;  1WYN A;  3KMU B;  1DXX A;  1WIX A;  3HOC A;  5A36 A;  3JAR M;  5J8E A;  4EDN A;  1WYP A;  2K3S A;  2EE7 A;  4Q57 B;  3I6X A;  3KY9 A;  2VZI B;  4TXK A;  1AOA A;  3JAK M;  2JV9 A;  2WA5 A;  2WFN A;  3JAL M;  3REP B;  2D87 A;  5L0O A;  1WYO A;  2RR8 A;  1WKU A;  2D88 A;  2R8U A;  2VZG B;  2VZC A;  4EDL A;  2R0O A;  1H67 A;  5A37 A;  4TXI A;  1VKA A;  2D89 A;  2DK9 A;  2E9K A;  1BKR A;  2EYN A;  2K2R A;  1RT8 A;  4Q59 A;  2EYI A;  1P2X A;  1WYQ A;  4Q58 A;  2QJZ A;  1WYL A;  1SH6 A;  3FER A;  2D85 A;  1WYR A;  3HOR A;  5BVR A;  1BHD A;  2QJX A;  1WYM A; 
#chains in the Genus database with same CATH topology
 2IGP A;  1AA2 A;  1QAG A;  2D86 A;  2EQO A;  1PXY A;  1UEG A;  1WJO A;  2WA7 A;  5A38 A;  3KMW B;  1V5K A;  4DDP A;  1MB8 A;  1P5S A;  3HOP A;  3CO1 A;  1TJT A;  2WE6 A;  2HL9 A;  2HL8 A;  2VZD A;  2WA6 A;  2L3G A;  4EDM A;  3F7P A;  5A4B A;  1PA7 A;  4B7L A;  2YRN A;  1SH5 A;  4LVP A;  1UJO A;  4LVR A;  5FMU A;  1WYN A;  3KMU B;  2WDT A;  1DXX A;  1WIX A;  3HOC A;  5A36 A;  3JAR M;  5J8E A;  4EDN A;  1WYP A;  2K3S A;  2EE7 A;  4Q57 B;  3I6X A;  3KY9 A;  2VZI B;  2HKP A;  4TXK A;  1AOA A;  3JAK M;  2JV9 A;  2WA5 A;  2WFN A;  3JAL M;  3REP B;  3EAY A;  2D87 A;  5L0O A;  1WYO A;  2RR8 A;  1WKU A;  2D88 A;  2R8U A;  2VZG B;  2VZC A;  4EDL A;  2R0O A;  1H67 A;  5A37 A;  4TXI A;  5FMT A;  1VKA A;  2D89 A;  2DK9 A;  2E9K A;  1BKR A;  2EYN A;  2K2R A;  1RT8 A;  4Q59 A;  2EYI A;  3VP7 A;  1P2X A;  1WYQ A;  4Q58 A;  1EUV A;  2QJZ A;  1WYL A;  1SH6 A;  3FER A;  2D85 A;  1WYR A;  3HOR A;  2VE7 A;  2VE7 C;  5BVR A;  1BHD A;  2QJX A;  1WYM A; 
#chains in the Genus database with same CATH homology
 1AA2 A;  1QAG A;  2D86 A;  1PXY A;  1UEG A;  1WJO A;  2WA7 A;  5A38 A;  3KMW B;  1V5K A;  1MB8 A;  1P5S A;  3HOP A;  3CO1 A;  1TJT A;  2VZD A;  2WA6 A;  2L3G A;  4EDM A;  3F7P A;  5A4B A;  1PA7 A;  4B7L A;  2YRN A;  1SH5 A;  1UJO A;  1WYN A;  3KMU B;  1DXX A;  1WIX A;  3HOC A;  5A36 A;  3JAR M;  5J8E A;  4EDN A;  1WYP A;  2K3S A;  2EE7 A;  4Q57 B;  3I6X A;  3KY9 A;  2VZI B;  4TXK A;  1AOA A;  3JAK M;  2JV9 A;  2WA5 A;  2WFN A;  3JAL M;  3REP B;  2D87 A;  5L0O A;  1WYO A;  2RR8 A;  1WKU A;  2D88 A;  2R8U A;  2VZG B;  2VZC A;  4EDL A;  2R0O A;  1H67 A;  5A37 A;  4TXI A;  1VKA A;  2D89 A;  2DK9 A;  2E9K A;  1BKR A;  2EYN A;  2K2R A;  1RT8 A;  4Q59 A;  2EYI A;  1P2X A;  1WYQ A;  4Q58 A;  2QJZ A;  1WYL A;  1SH6 A;  3FER A;  2D85 A;  1WYR A;  3HOR A;  5BVR A;  1BHD A;  2QJX A;  1WYM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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