1X1WD

Water-mediate interaction at aprotein-protein interface
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
90
structure length
90
Chain Sequence
MKKAVINGEQIRSISDLHQTLKKELALPEYYGENLDALWDALTGWVEYPLVLEWRQFEQSKQLTENGAESVLQVFREAKAAGADITIILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/protein binding
molecule keywords Ribonuclease
publication title Water-mediated interaction at a protein-protein interface
pubmed rcsb
source organism Bacillus amyloliquefaciens
total genus 36
structure length 90
sequence length 90
chains with identical sequence E, F
ec nomenclature
pdb deposition date 2005-04-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01337 Barstar Barstar (barnase inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.370.10 Alpha Beta 2-Layer Sandwich Barnase; Chain D Barstar-like 1x1wD00
3DA7C 1B2SD 5F4CA 1B3SD 1X1WD 1B27D 1X1XD 1AB7A 1AY7B 1BTAA 1A19A 1X1YD 1X1UD 1BTBA 1BGSE 1BRSD 2ZA4B 1B2UD 2CX6A 2HXXA
chains in the Genus database with same CATH superfamily
3DA7C 2YK4A 2YK5A 2YK6A 2YK7A 1B2SD 5F4CA 1B3SD 1X1WD 1B27D 1X1XD 1AB7A 1AY7B 1BTAA 1A19A 1X1YD 1X1UD 1BTBA 1BGSE 1BRSD 2ZA4B 1B2UD 2CX6A 2HXXA
chains in the Genus database with same CATH topology
3DA7C 1B2SD 5F4CA 1B3SD 1X1WD 1B27D 1X1XD 1AB7A 1AY7B 1BTAA 1A19A 1X1YD 1X1UD 1BTBA 1BGSE 1BRSD 2ZA4B 1B2UD 2CX6A 2HXXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DA7 C;  1B2S D;  5F4C A;  1B3S D;  1X1W D;  1B27 D;  1X1X D;  1AB7 A;  1AY7 B;  1BTA A;  1A19 A;  1X1Y D;  1X1U D;  1BTB A;  1BGS E;  1BRS D;  2ZA4 B;  1B2U D;  2CX6 A;  2HXX A; 
#chains in the Genus database with same CATH topology
 3DA7 C;  2YK4 A;  2YK5 A;  2YK6 A;  2YK7 A;  1B2S D;  5F4C A;  1B3S D;  1X1W D;  1B27 D;  1X1X D;  1AB7 A;  1AY7 B;  1BTA A;  1A19 A;  1X1Y D;  1X1U D;  1BTB A;  1BGS E;  1BRS D;  2ZA4 B;  1B2U D;  2CX6 A;  2HXX A; 
#chains in the Genus database with same CATH homology
 3DA7 C;  1B2S D;  5F4C A;  1B3S D;  1X1W D;  1B27 D;  1X1X D;  1AB7 A;  1AY7 B;  1BTA A;  1A19 A;  1X1Y D;  1X1U D;  1BTB A;  1BGS E;  1BRS D;  2ZA4 B;  1B2U D;  2CX6 A;  2HXX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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