1X3HA

Solution structure of the lim domain of human leupaxin
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
80
structure length
80
Chain Sequence
GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Leupaxin
publication title Solution structure of the LIM domain of human Leupaxin
rcsb
source organism Homo sapiens
total genus 7
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1x3hA00
2IYBE 1WIGA 2DLOA 2CUQA 4HI8B 1V6GA 1X61A 2CU8A 1X4LA 1X64A 2DJ7A 2MBVA 1X6AA 2XJYA 1RUTX 2XQNT 3IXEB 2CUPA 4KFZA 2D8ZA 2EHEA 3MMKA 2YPAC 1CXXA 2CORA 1B8TA 1WYHA 2O10A 4HI9B 4JCJA 1J2OA 1IMLA 2CURA 2XJZA 2L4ZA 1IBIA 2MIUA 1G47A 2EGQA 2LZUA 1X68A 2JTNA 2L6ZC 1X63A 1U5SB 2D8XA 2D8YA 2KBXB 2O13A 2DARA 2L6YB 1CTLA 1NYPA 1M3VA 1X3HA 3F6QB 1X62A 1QLIA 2DFYC 2LXDA 1A7IA 2CO8A
chains in the Genus database with same CATH superfamily
2IYBE 2DLOA 2CUQA 1X64A 1X6AA 2XQNT 3IXEB 5LKUA 2CUPA 2EHEA 1CXXA 4UF0A 2XUEA 2L4ZA 1IBIA 1G47A 2LZUA 4ASKA 1X63A 1U5SB 5A1LA 3F6QB 1X62A 2DFYC 2LXDA 1WIGA 5FXXA 1V6GA 5FY7A 5LKTA 3NILA 2D8ZA 2YPAC 1B8TA 1WYHA 1J2OA 3AVSA 2XJZA 4EZ4A 3ZPOA 2JTNA 2D8YA 2DARA 2L6YB 1NYPA 1A7IA 2D8XA 4HI8B 1X61A 2CU8A 3NINA 3ZLIA 2DJ7A 1RUTX 3NIHA 3MMKA 2O10A 4HI9B 5FYMA 5FP3A 4EYUA 5LKXA 3NISA 1X68A 4BHWA 2O13A 1X3HA 1QLIA 1CTLA 4UF0B 3NIJA 1X4LA 2XJYA 2MBVA 4EZHA 5FY1A 3NIKA 5LKZA 4KFZA 5FXZA 2CORA 4JCJA 1IMLA 2CURA 2MIUA 2EGQA 5FY0A 3AVRA 2L6ZC 3NIMA 5FXWA 5FXVA 2KBXB 1M3VA 2CO8A
chains in the Genus database with same CATH topology
2IYBE 2DLOA 2CUQA 1X64A 1X6AA 2XQNT 3IXEB 5LKUA 2CUPA 2EHEA 1CXXA 4UF0A 2XUEA 2L4ZA 1IBIA 1G47A 2LZUA 4ASKA 1X63A 1U5SB 5A1LA 3F6QB 1X62A 2DFYC 2LXDA 1WIGA 5FXXA 1V6GA 5FY7A 5LKTA 3NILA 2D8ZA 2YPAC 1B8TA 1WYHA 1J2OA 3AVSA 2XJZA 4EZ4A 3ZPOA 2JTNA 2D8YA 2DARA 2L6YB 1NYPA 1A7IA 2D8XA 4HI8B 1X61A 2CU8A 3NINA 3ZLIA 2DJ7A 1RUTX 3NIHA 3MMKA 2O10A 4HI9B 5FYMA 5FP3A 4EYUA 5LKXA 3NISA 1X68A 4BHWA 2O13A 1X3HA 1QLIA 1CTLA 4UF0B 3NIJA 1X4LA 2XJYA 2MBVA 4EZHA 5FY1A 3NIKA 5LKZA 4KFZA 5FXZA 2CORA 4JCJA 1IMLA 2CURA 2MIUA 2EGQA 5FY0A 3AVRA 2L6ZC 3NIMA 5FXWA 5FXVA 2KBXB 1M3VA 2CO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IYB E;  1WIG A;  2DLO A;  2CUQ A;  4HI8 B;  1V6G A;  1X61 A;  2CU8 A;  1X4L A;  1X64 A;  2DJ7 A;  2MBV A;  1X6A A;  2XJY A;  1RUT X;  2XQN T;  3IXE B;  2CUP A;  4KFZ A;  2D8Z A;  2EHE A;  3MMK A;  2YPA C;  1CXX A;  2COR A;  1B8T A;  1WYH A;  2O10 A;  4HI9 B;  4JCJ A;  1J2O A;  1IML A;  2CUR A;  2XJZ A;  2L4Z A;  1IBI A;  2MIU A;  1G47 A;  2EGQ A;  2LZU A;  1X68 A;  2JTN A;  2L6Z C;  1X63 A;  1U5S B;  2D8X A;  2D8Y A;  2KBX B;  2O13 A;  2DAR A;  2L6Y B;  1CTL A;  1NYP A;  1M3V A;  1X3H A;  3F6Q B;  1X62 A;  1QLI A;  2DFY C;  2LXD A;  1A7I A;  2CO8 A; 
#chains in the Genus database with same CATH topology
 2IYB E;  2DLO A;  2CUQ A;  1X64 A;  1X6A A;  2XQN T;  3IXE B;  5LKU A;  2CUP A;  2EHE A;  1CXX A;  4UF0 A;  2XUE A;  2L4Z A;  1IBI A;  1G47 A;  2LZU A;  4ASK A;  1X63 A;  1U5S B;  5A1L A;  3F6Q B;  1X62 A;  2DFY C;  2LXD A;  1WIG A;  5FXX A;  1V6G A;  5FY7 A;  5LKT A;  3NIL A;  2D8Z A;  2YPA C;  1B8T A;  1WYH A;  1J2O A;  3AVS A;  2XJZ A;  4EZ4 A;  3ZPO A;  2JTN A;  2D8Y A;  2DAR A;  2L6Y B;  1NYP A;  1A7I A;  2D8X A;  4HI8 B;  1X61 A;  2CU8 A;  3NIN A;  3ZLI A;  2DJ7 A;  1RUT X;  3NIH A;  3MMK A;  2O10 A;  4HI9 B;  5FYM A;  5FP3 A;  4EYU A;  5LKX A;  3NIS A;  1X68 A;  4BHW A;  2O13 A;  1X3H A;  1QLI A;  1CTL A;  4UF0 B;  3NIJ A;  1X4L A;  2XJY A;  2MBV A;  4EZH A;  5FY1 A;  3NIK A;  5LKZ A;  4KFZ A;  5FXZ A;  2COR A;  4JCJ A;  1IML A;  2CUR A;  2MIU A;  2EGQ A;  5FY0 A;  3AVR A;  2L6Z C;  3NIM A;  5FXW A;  5FXV A;  2KBX B;  1M3V A;  2CO8 A; 
#chains in the Genus database with same CATH homology
 2IYB E;  2DLO A;  2CUQ A;  1X64 A;  1X6A A;  2XQN T;  3IXE B;  5LKU A;  2CUP A;  2EHE A;  1CXX A;  4UF0 A;  2XUE A;  2L4Z A;  1IBI A;  1G47 A;  2LZU A;  4ASK A;  1X63 A;  1U5S B;  5A1L A;  3F6Q B;  1X62 A;  2DFY C;  2LXD A;  1WIG A;  5FXX A;  1V6G A;  5FY7 A;  5LKT A;  3NIL A;  2D8Z A;  2YPA C;  1B8T A;  1WYH A;  1J2O A;  3AVS A;  2XJZ A;  4EZ4 A;  3ZPO A;  2JTN A;  2D8Y A;  2DAR A;  2L6Y B;  1NYP A;  1A7I A;  2D8X A;  4HI8 B;  1X61 A;  2CU8 A;  3NIN A;  3ZLI A;  2DJ7 A;  1RUT X;  3NIH A;  3MMK A;  2O10 A;  4HI9 B;  5FYM A;  5FP3 A;  4EYU A;  5LKX A;  3NIS A;  1X68 A;  4BHW A;  2O13 A;  1X3H A;  1QLI A;  1CTL A;  4UF0 B;  3NIJ A;  1X4L A;  2XJY A;  2MBV A;  4EZH A;  5FY1 A;  3NIK A;  5LKZ A;  4KFZ A;  5FXZ A;  2COR A;  4JCJ A;  1IML A;  2CUR A;  2MIU A;  2EGQ A;  5FY0 A;  3AVR A;  2L6Z C;  3NIM A;  5FXW A;  5FXV A;  2KBX B;  1M3V A;  2CO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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