1X62A

Solution structure of the lim domain of carboxyl terminal lim domain protein 1
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
79
structure length
79
Chain Sequence
GSSGSSGSIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords C-terminal LIM domain protein 1
publication title Solution structure of the LIM domain of carboxyl terminal LIM domain protein 1
rcsb
source organism Homo sapiens
total genus 6
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1x62A01
1CXXA 1M3VA 1WYHA 2JTNA 1X6AA 2XQNT 4HI9B 2L6ZC 2CUQA 1J2OA 2O13A 2DJ7A 4JCJA 2DLOA 1X4LA 1V6GA 1X3HA 2KBXB 2CUPA 1X61A 2EGQA 1CTLA 2XJZA 2MBVA 2DARA 1QLIA 1G47A 1X64A 1WIGA 2D8XA 2L6YB 1IMLA 2L4ZA 4HI8B 2D8ZA 2LZUA 3F6QB 2CURA 1B8TA 1U5SB 2CU8A 1NYPA 2O10A 3IXEB 2DFYC 2CO8A 1X68A 1A7IA 1RUTX 1X62A 4KFZA 1IBIA 2D8YA 3MMKA 2EHEA 2YPAC 2LXDA 2CORA 2MIUA 1X63A 2IYBE 2XJYA
chains in the Genus database with same CATH superfamily
1M3VA 2JTNA 4BHWA 3ZPOA 2O13A 2DLOA 1X4LA 1X3HA 3NIKA 3NILA 2CUPA 1X61A 3NISA 1QLIA 1X64A 4EZHA 2D8XA 4HI8B 3F6QB 1U5SB 3IXEB 2DFYC 1X62A 5FP3A 5FXZA 2D8YA 5FXWA 3MMKA 2IYBE 5A1LA 5FXVA 3NIMA 4HI9B 2CUQA 1V6GA 5FY1A 2EGQA 2XJZA 1WIGA 2L6YB 1IMLA 2D8ZA 2LZUA 1B8TA 5FYMA 3ZLIA 3NIJA 1A7IA 1RUTX 4EYUA 2MIUA 1CXXA 5FY0A 5LKUA 3AVRA 3NINA 5FXXA 2L6ZC 2XUEA 2DJ7A 4UF0A 4UF0B 1CTLA 2MBVA 2DARA 2L4ZA 1X68A 4KFZA 1IBIA 3NIHA 2LXDA 2CORA 1X63A 4EZ4A 5FY7A 1WYHA 1X6AA 2XQNT 1J2OA 4JCJA 5LKZA 2KBXB 4ASKA 5LKTA 1G47A 3AVSA 2CURA 2CU8A 1NYPA 2O10A 2CO8A 5LKXA 2EHEA 2YPAC 2XJYA
chains in the Genus database with same CATH topology
1M3VA 2JTNA 4BHWA 3ZPOA 2O13A 2DLOA 1X4LA 1X3HA 3NIKA 3NILA 2CUPA 1X61A 3NISA 1QLIA 1X64A 4EZHA 2D8XA 4HI8B 3F6QB 1U5SB 3IXEB 2DFYC 1X62A 5FP3A 5FXZA 2D8YA 5FXWA 3MMKA 2IYBE 5A1LA 5FXVA 3NIMA 4HI9B 2CUQA 1V6GA 5FY1A 2EGQA 2XJZA 1WIGA 2L6YB 1IMLA 2D8ZA 2LZUA 1B8TA 5FYMA 3ZLIA 3NIJA 1A7IA 1RUTX 4EYUA 2MIUA 1CXXA 5FY0A 5LKUA 3AVRA 3NINA 5FXXA 2L6ZC 2XUEA 2DJ7A 4UF0A 4UF0B 1CTLA 2MBVA 2DARA 2L4ZA 1X68A 4KFZA 1IBIA 3NIHA 2LXDA 2CORA 1X63A 4EZ4A 5FY7A 1WYHA 1X6AA 2XQNT 1J2OA 4JCJA 5LKZA 2KBXB 4ASKA 5LKTA 1G47A 3AVSA 2CURA 2CU8A 1NYPA 2O10A 2CO8A 5LKXA 2EHEA 2YPAC 2XJYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXX A;  1M3V A;  1WYH A;  2JTN A;  1X6A A;  2XQN T;  4HI9 B;  2L6Z C;  2CUQ A;  1J2O A;  2O13 A;  2DJ7 A;  4JCJ A;  2DLO A;  1X4L A;  1V6G A;  1X3H A;  2KBX B;  2CUP A;  1X61 A;  2EGQ A;  1CTL A;  2XJZ A;  2MBV A;  2DAR A;  1QLI A;  1G47 A;  1X64 A;  1WIG A;  2D8X A;  2L6Y B;  1IML A;  2L4Z A;  4HI8 B;  2D8Z A;  2LZU A;  3F6Q B;  2CUR A;  1B8T A;  1U5S B;  2CU8 A;  1NYP A;  2O10 A;  3IXE B;  2DFY C;  2CO8 A;  1X68 A;  1A7I A;  1RUT X;  1X62 A;  4KFZ A;  1IBI A;  2D8Y A;  3MMK A;  2EHE A;  2YPA C;  2LXD A;  2COR A;  2MIU A;  1X63 A;  2IYB E;  2XJY A; 
#chains in the Genus database with same CATH topology
 1M3V A;  2JTN A;  4BHW A;  3ZPO A;  2O13 A;  2DLO A;  1X4L A;  1X3H A;  3NIK A;  3NIL A;  2CUP A;  1X61 A;  3NIS A;  1QLI A;  1X64 A;  4EZH A;  2D8X A;  4HI8 B;  3F6Q B;  1U5S B;  3IXE B;  2DFY C;  1X62 A;  5FP3 A;  5FXZ A;  2D8Y A;  5FXW A;  3MMK A;  2IYB E;  5A1L A;  5FXV A;  3NIM A;  4HI9 B;  2CUQ A;  1V6G A;  5FY1 A;  2EGQ A;  2XJZ A;  1WIG A;  2L6Y B;  1IML A;  2D8Z A;  2LZU A;  1B8T A;  5FYM A;  3ZLI A;  3NIJ A;  1A7I A;  1RUT X;  4EYU A;  2MIU A;  1CXX A;  5FY0 A;  5LKU A;  3AVR A;  3NIN A;  5FXX A;  2L6Z C;  2XUE A;  2DJ7 A;  4UF0 A;  4UF0 B;  1CTL A;  2MBV A;  2DAR A;  2L4Z A;  1X68 A;  4KFZ A;  1IBI A;  3NIH A;  2LXD A;  2COR A;  1X63 A;  4EZ4 A;  5FY7 A;  1WYH A;  1X6A A;  2XQN T;  1J2O A;  4JCJ A;  5LKZ A;  2KBX B;  4ASK A;  5LKT A;  1G47 A;  3AVS A;  2CUR A;  2CU8 A;  1NYP A;  2O10 A;  2CO8 A;  5LKX A;  2EHE A;  2YPA C;  2XJY A; 
#chains in the Genus database with same CATH homology
 1M3V A;  2JTN A;  4BHW A;  3ZPO A;  2O13 A;  2DLO A;  1X4L A;  1X3H A;  3NIK A;  3NIL A;  2CUP A;  1X61 A;  3NIS A;  1QLI A;  1X64 A;  4EZH A;  2D8X A;  4HI8 B;  3F6Q B;  1U5S B;  3IXE B;  2DFY C;  1X62 A;  5FP3 A;  5FXZ A;  2D8Y A;  5FXW A;  3MMK A;  2IYB E;  5A1L A;  5FXV A;  3NIM A;  4HI9 B;  2CUQ A;  1V6G A;  5FY1 A;  2EGQ A;  2XJZ A;  1WIG A;  2L6Y B;  1IML A;  2D8Z A;  2LZU A;  1B8T A;  5FYM A;  3ZLI A;  3NIJ A;  1A7I A;  1RUT X;  4EYU A;  2MIU A;  1CXX A;  5FY0 A;  5LKU A;  3AVR A;  3NIN A;  5FXX A;  2L6Z C;  2XUE A;  2DJ7 A;  4UF0 A;  4UF0 B;  1CTL A;  2MBV A;  2DAR A;  2L4Z A;  1X68 A;  4KFZ A;  1IBI A;  3NIH A;  2LXD A;  2COR A;  1X63 A;  4EZ4 A;  5FY7 A;  1WYH A;  1X6A A;  2XQN T;  1J2O A;  4JCJ A;  5LKZ A;  2KBX B;  4ASK A;  5LKT A;  1G47 A;  3AVS A;  2CUR A;  2CU8 A;  1NYP A;  2O10 A;  2CO8 A;  5LKX A;  2EHE A;  2YPA C;  2XJY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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