1X67A

Solution structure of the cofilin homology domain of hip-55 (drebrin-like protein)
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
146
structure length
146
Chain Sequence
GSSGSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVASGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Drebrin-like protein
publication title NMR solution structures of actin depolymerizing factor homology domains.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1x67A01
2L72A 2LJ8A 2VIKA 1CFYA 5FAFA 2MOTA 1M2VB 3EH1A 2MV2A 1AK7A 1M2VA 1Q8XA 3CJCG 1EQYS 1KCQA 2VILA 1V6FA 1T44G 1PD1A 4CBXG 5HVKD 2FH3A 1C0FS 1ESVS 1T3YA 3FFKA 4BEX1 2MP4A 1RGIG 3EGDA 5IVUA 1T3XA 1D0NA 2LLFA 3FFNA 1J72A 1QPVA 1TMWA 1WM4A 1SVQA 4LIZA 2FH1A 3CJBG 5DD2A 1PD0A 3CI5G 3EGXB 1CNUA 1YVNG 5A1MA 4JD2H 2NUPB 2NUPA 2FF3A 1X67A 4CBWG 1M2OA 1Q8GA 2D8BA 3A5MS 1AK6A 4KEFA 3Q2BA 3EH2A 1MDUA 2FGHA 3L50A 1YAGG 1VKKA 3FG6A 1P8ZG 5KYNA 1VFQA 1NM1G 1H1VG 4Z94G 2LXXA 1T2LA 5L6WC 5KYXB 2QTVA 2HD7A 1DEJS 1P8XA 5KYYB 3EFOB 5KYYA 3EG9B 1NMDG 4PKHB 3EGXA 2XF1A 5HVKB 1AHQA 2VACA 1F7SA 3A5NS 5FAEA 3CIPG 2W0IA 5KYWB 5KYWA 2NUTB 3A5LS 4KEDA 1TVJA 4KEEA 2KVKA 1D4XG 1HQZ1 1NPHA 3FG7A 1WFSA 2FH4A 2XFAA 4PKGG 1SVRA 1UDMA 3TU5B 5KYXA 4S10C 1C0GS 3EFOA 5KYUB 5KYUA 1COFA 3EG9A 1SVYA 2FH2A 3EGDB 1M4JA 2I2QA 3DAWB 4CBUG 2FF6G 2NUTA 1PCXA 1WNJA 1NLVG 1JHWA 3A5OS 4PKIG
chains in the Genus database with same CATH superfamily
2L72A 2LJ8A 2VIKA 1CFYA 5FAFA 2MOTA 1M2VB 3EH1A 2MV2A 1AK7A 1M2VA 1Q8XA 3CJCG 1EQYS 1KCQA 2VILA 1V6FA 1T44G 1PD1A 4CBXG 5HVKD 2FH3A 1C0FS 1ESVS 1T3YA 3FFKA 4BEX1 2MP4A 1RGIG 3EGDA 5IVUA 1T3XA 1D0NA 2LLFA 3FFNA 1J72A 1QPVA 1TMWA 1WM4A 1SVQA 4LIZA 2FH1A 3CJBG 5DD2A 1PD0A 3CI5G 3EGXB 1CNUA 1YVNG 5A1MA 4JD2H 2NUPB 2NUPA 2FF3A 1X67A 4CBWG 1M2OA 1Q8GA 2D8BA 3A5MS 1AK6A 4KEFA 3Q2BA 3EH2A 1MDUA 2FGHA 3L50A 1YAGG 1VKKA 3FG6A 1P8ZG 5KYNA 1VFQA 3DA7A 1NM1G 1H1VG 4Z94G 2LXXA 1T2LA 5L6WC 5KYXB 2QTVA 2HD7A 1DEJS 1P8XA 5KYYB 3EFOB 5KYYA 3EG9B 1NMDG 4PKHB 3EGXA 2XF1A 5HVKB 1AHQA 2VACA 1F7SA 3A5NS 5FAEA 3CIPG 2W0IA 5KYWB 5KYWA 2NUTB 3A5LS 4KEDA 1TVJA 4KEEA 2KVKA 1D4XG 1HQZ1 1NPHA 3FG7A 1WFSA 2FH4A 2XFAA 4PKGG 1SVRA 1UDMA 3TU5B 5KYXA 4S10C 1C0GS 3EFOA 5KYUB 5KYUA 1COFA 3EG9A 1SVYA 2FH2A 3EGDB 1M4JA 2I2QA 3DAWB 4CBUG 2FF6G 2NUTA 1PCXA 1WNJA 1NLVG 1JHWA 3A5OS 4PKIG
chains in the Genus database with same CATH topology
2L72A 2LJ8A 2VIKA 1CFYA 5FAFA 2MOTA 1M2VB 3EH1A 2MV2A 1AK7A 1M2VA 1Q8XA 3CJCG 1EQYS 1KCQA 2VILA 1V6FA 1T44G 1PD1A 4CBXG 5HVKD 2FH3A 1C0FS 1ESVS 1T3YA 3FFKA 4BEX1 2MP4A 1RGIG 3EGDA 5IVUA 1T3XA 1D0NA 2LLFA 3FFNA 1J72A 1QPVA 1TMWA 1WM4A 1SVQA 4LIZA 2FH1A 3CJBG 5DD2A 1PD0A 3CI5G 3EGXB 1CNUA 1YVNG 5A1MA 4JD2H 2NUPB 2NUPA 2FF3A 1X67A 4CBWG 1M2OA 1Q8GA 2D8BA 3A5MS 1AK6A 4KEFA 3Q2BA 3EH2A 1MDUA 2FGHA 3L50A 1YAGG 1VKKA 3FG6A 1P8ZG 5KYNA 1VFQA 3DA7A 1NM1G 1H1VG 4Z94G 2LXXA 1T2LA 5L6WC 5KYXB 2QTVA 2HD7A 1DEJS 1P8XA 5KYYB 3EFOB 5KYYA 3EG9B 1NMDG 4PKHB 3EGXA 2XF1A 5HVKB 1AHQA 2VACA 1F7SA 3A5NS 5FAEA 3CIPG 2W0IA 5KYWB 5KYWA 2NUTB 3A5LS 4KEDA 1TVJA 4KEEA 2KVKA 1D4XG 1HQZ1 1NPHA 3FG7A 1WFSA 2FH4A 2XFAA 4PKGG 1SVRA 1UDMA 3TU5B 5KYXA 4S10C 1C0GS 3EFOA 5KYUB 5KYUA 1COFA 3EG9A 1SVYA 2FH2A 3EGDB 1M4JA 2I2QA 3DAWB 4CBUG 2FF6G 2NUTA 1PCXA 1WNJA 1NLVG 1JHWA 3A5OS 4PKIG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L72 A;  2LJ8 A;  2VIK A;  1CFY A;  5FAF A;  2MOT A;  1M2V B;  3EH1 A;  2MV2 A;  1AK7 A;  1M2V A;  1Q8X A;  3CJC G;  1EQY S;  1KCQ A;  2VIL A;  1V6F A;  1T44 G;  1PD1 A;  4CBX G;  5HVK D;  2FH3 A;  1C0F S;  1ESV S;  1T3Y A;  3FFK A;  4BEX 1;  2MP4 A;  1RGI G;  3EGD A;  5IVU A;  1T3X A;  1D0N A;  2LLF A;  3FFN A;  1J72 A;  1QPV A;  1TMW A;  1WM4 A;  1SVQ A;  4LIZ A;  2FH1 A;  3CJB G;  5DD2 A;  1PD0 A;  3CI5 G;  3EGX B;  1CNU A;  1YVN G;  5A1M A;  4JD2 H;  2NUP B;  2NUP A;  2FF3 A;  1X67 A;  4CBW G;  1M2O A;  1Q8G A;  2D8B A;  3A5M S;  1AK6 A;  4KEF A;  3Q2B A;  3EH2 A;  1MDU A;  2FGH A;  3L50 A;  1YAG G;  1VKK A;  3FG6 A;  1P8Z G;  5KYN A;  1VFQ A;  1NM1 G;  1H1V G;  4Z94 G;  2LXX A;  1T2L A;  5L6W C;  5KYX B;  2QTV A;  2HD7 A;  1DEJ S;  1P8X A;  5KYY B;  3EFO B;  5KYY A;  3EG9 B;  1NMD G;  4PKH B;  3EGX A;  2XF1 A;  5HVK B;  1AHQ A;  2VAC A;  1F7S A;  3A5N S;  5FAE A;  3CIP G;  2W0I A;  5KYW B;  5KYW A;  2NUT B;  3A5L S;  4KED A;  1TVJ A;  4KEE A;  2KVK A;  1D4X G;  1HQZ 1;  1NPH A;  3FG7 A;  1WFS A;  2FH4 A;  2XFA A;  4PKG G;  1SVR A;  1UDM A;  3TU5 B;  5KYX A;  4S10 C;  1C0G S;  3EFO A;  5KYU B;  5KYU A;  1COF A;  3EG9 A;  1SVY A;  2FH2 A;  3EGD B;  1M4J A;  2I2Q A;  3DAW B;  4CBU G;  2FF6 G;  2NUT A;  1PCX A;  1WNJ A;  1NLV G;  1JHW A;  3A5O S;  4PKI G; 
#chains in the Genus database with same CATH topology
 2L72 A;  2LJ8 A;  2VIK A;  1CFY A;  5FAF A;  2MOT A;  1M2V B;  3EH1 A;  2MV2 A;  1AK7 A;  1M2V A;  1Q8X A;  3CJC G;  1EQY S;  1KCQ A;  2VIL A;  1V6F A;  1T44 G;  1PD1 A;  4CBX G;  5HVK D;  2FH3 A;  1C0F S;  1ESV S;  1T3Y A;  3FFK A;  4BEX 1;  2MP4 A;  1RGI G;  3EGD A;  5IVU A;  1T3X A;  1D0N A;  2LLF A;  3FFN A;  1J72 A;  1QPV A;  1TMW A;  1WM4 A;  1SVQ A;  4LIZ A;  2FH1 A;  3CJB G;  5DD2 A;  1PD0 A;  3CI5 G;  3EGX B;  1CNU A;  1YVN G;  5A1M A;  4JD2 H;  2NUP B;  2NUP A;  2FF3 A;  1X67 A;  4CBW G;  1M2O A;  1Q8G A;  2D8B A;  3A5M S;  1AK6 A;  4KEF A;  3Q2B A;  3EH2 A;  1MDU A;  2FGH A;  3L50 A;  1YAG G;  1VKK A;  3FG6 A;  1P8Z G;  5KYN A;  1VFQ A;  3DA7 A;  1NM1 G;  1H1V G;  4Z94 G;  2LXX A;  1T2L A;  5L6W C;  5KYX B;  2QTV A;  2HD7 A;  1DEJ S;  1P8X A;  5KYY B;  3EFO B;  5KYY A;  3EG9 B;  1NMD G;  4PKH B;  3EGX A;  2XF1 A;  5HVK B;  1AHQ A;  2VAC A;  1F7S A;  3A5N S;  5FAE A;  3CIP G;  2W0I A;  5KYW B;  5KYW A;  2NUT B;  3A5L S;  4KED A;  1TVJ A;  4KEE A;  2KVK A;  1D4X G;  1HQZ 1;  1NPH A;  3FG7 A;  1WFS A;  2FH4 A;  2XFA A;  4PKG G;  1SVR A;  1UDM A;  3TU5 B;  5KYX A;  4S10 C;  1C0G S;  3EFO A;  5KYU B;  5KYU A;  1COF A;  3EG9 A;  1SVY A;  2FH2 A;  3EGD B;  1M4J A;  2I2Q A;  3DAW B;  4CBU G;  2FF6 G;  2NUT A;  1PCX A;  1WNJ A;  1NLV G;  1JHW A;  3A5O S;  4PKI G; 
#chains in the Genus database with same CATH homology
 2L72 A;  2LJ8 A;  2VIK A;  1CFY A;  5FAF A;  2MOT A;  1M2V B;  3EH1 A;  2MV2 A;  1AK7 A;  1M2V A;  1Q8X A;  3CJC G;  1EQY S;  1KCQ A;  2VIL A;  1V6F A;  1T44 G;  1PD1 A;  4CBX G;  5HVK D;  2FH3 A;  1C0F S;  1ESV S;  1T3Y A;  3FFK A;  4BEX 1;  2MP4 A;  1RGI G;  3EGD A;  5IVU A;  1T3X A;  1D0N A;  2LLF A;  3FFN A;  1J72 A;  1QPV A;  1TMW A;  1WM4 A;  1SVQ A;  4LIZ A;  2FH1 A;  3CJB G;  5DD2 A;  1PD0 A;  3CI5 G;  3EGX B;  1CNU A;  1YVN G;  5A1M A;  4JD2 H;  2NUP B;  2NUP A;  2FF3 A;  1X67 A;  4CBW G;  1M2O A;  1Q8G A;  2D8B A;  3A5M S;  1AK6 A;  4KEF A;  3Q2B A;  3EH2 A;  1MDU A;  2FGH A;  3L50 A;  1YAG G;  1VKK A;  3FG6 A;  1P8Z G;  5KYN A;  1VFQ A;  3DA7 A;  1NM1 G;  1H1V G;  4Z94 G;  2LXX A;  1T2L A;  5L6W C;  5KYX B;  2QTV A;  2HD7 A;  1DEJ S;  1P8X A;  5KYY B;  3EFO B;  5KYY A;  3EG9 B;  1NMD G;  4PKH B;  3EGX A;  2XF1 A;  5HVK B;  1AHQ A;  2VAC A;  1F7S A;  3A5N S;  5FAE A;  3CIP G;  2W0I A;  5KYW B;  5KYW A;  2NUT B;  3A5L S;  4KED A;  1TVJ A;  4KEE A;  2KVK A;  1D4X G;  1HQZ 1;  1NPH A;  3FG7 A;  1WFS A;  2FH4 A;  2XFA A;  4PKG G;  1SVR A;  1UDM A;  3TU5 B;  5KYX A;  4S10 C;  1C0G S;  3EFO A;  5KYU B;  5KYU A;  1COF A;  3EG9 A;  1SVY A;  2FH2 A;  3EGD B;  1M4J A;  2I2Q A;  3DAW B;  4CBU G;  2FF6 G;  2NUT A;  1PCX A;  1WNJ A;  1NLV G;  1JHW A;  3A5O S;  4PKI G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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