1X6AA

Solution structures of the second lim domain of human lim-kinase 2 (limk2)
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
81
structure length
81
Chain Sequence
GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords LIM domain kinase 2
publication title Solution structures of the second LIM domain of human LIM-kinase 2 (LIMK2)
rcsb
source organism Homo sapiens
total genus 6
structure length 81
sequence length 81
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1x6aA01
2CU8A 1X64A 2YPAC 1CXXA 2EGQA 4KFZA 1X4LA 1M3VA 2CORA 2CUPA 1X62A 1IMLA 1IBIA 4HI8B 1J2OA 4HI9B 3F6QB 1G47A 1WYHA 2XJYA 2JTNA 1X61A 1RUTX 2D8ZA 4JCJA 2MBVA 2LXDA 2D8XA 1X63A 2O13A 2MIUA 2XQNT 2L6YB 3IXEB 1U5SB 2L4ZA 1X6AA 3MMKA 2DFYC 1B8TA 1X68A 2EHEA 1NYPA 1QLIA 2L6ZC 2DLOA 1V6GA 2DJ7A 2D8YA 1WIGA 2DARA 1X3HA 2CO8A 2LZUA 1A7IA 2KBXB 2XJZA 2CURA 1CTLA 2O10A 2IYBE 2CUQA
chains in the Genus database with same CATH superfamily
3NISA 4UF0B 1X4LA 1IBIA 4HI8B 3NILA 3F6QB 5A1LA 5FXVA 1X63A 5LKUA 2L6YB 3IXEB 4ASKA 2DFYC 1QLIA 4EYUA 2DARA 2LZUA 3AVRA 4UF0A 2EGQA 4EZ4A 1M3VA 2CUPA 5FY0A 5FP3A 1IMLA 4HI9B 2JTNA 2D8ZA 1RUTX 3NIJA 2MBVA 2O13A 2MIUA 1B8TA 2DJ7A 1X3HA 2CO8A 5FY1A 2CURA 2O10A 5FYMA 2IYBE 2CUQA 5LKTA 3ZLIA 2CORA 2XUEA 5LKXA 1J2OA 1G47A 2XJYA 4JCJA 2D8XA 4BHWA 2XQNT 1U5SB 1X68A 2EHEA 4EZHA 5FXZA 2KBXB 1CTLA 5FY7A 3ZPOA 3NINA 2CU8A 1X64A 2YPAC 1CXXA 4KFZA 1X62A 3NIKA 1WYHA 1X61A 2LXDA 5FXWA 3NIHA 3NIMA 2L4ZA 1X6AA 3MMKA 1NYPA 5FXXA 2L6ZC 2DLOA 1V6GA 5LKZA 2D8YA 1WIGA 3AVSA 1A7IA 2XJZA
chains in the Genus database with same CATH topology
3NISA 4UF0B 1X4LA 1IBIA 4HI8B 3NILA 3F6QB 5A1LA 5FXVA 1X63A 5LKUA 2L6YB 3IXEB 4ASKA 2DFYC 1QLIA 4EYUA 2DARA 2LZUA 3AVRA 4UF0A 2EGQA 4EZ4A 1M3VA 2CUPA 5FY0A 5FP3A 1IMLA 4HI9B 2JTNA 2D8ZA 1RUTX 3NIJA 2MBVA 2O13A 2MIUA 1B8TA 2DJ7A 1X3HA 2CO8A 5FY1A 2CURA 2O10A 5FYMA 2IYBE 2CUQA 5LKTA 3ZLIA 2CORA 2XUEA 5LKXA 1J2OA 1G47A 2XJYA 4JCJA 2D8XA 4BHWA 2XQNT 1U5SB 1X68A 2EHEA 4EZHA 5FXZA 2KBXB 1CTLA 5FY7A 3ZPOA 3NINA 2CU8A 1X64A 2YPAC 1CXXA 4KFZA 1X62A 3NIKA 1WYHA 1X61A 2LXDA 5FXWA 3NIHA 3NIMA 2L4ZA 1X6AA 3MMKA 1NYPA 5FXXA 2L6ZC 2DLOA 1V6GA 5LKZA 2D8YA 1WIGA 3AVSA 1A7IA 2XJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CU8 A;  1X64 A;  2YPA C;  1CXX A;  2EGQ A;  4KFZ A;  1X4L A;  1M3V A;  2COR A;  2CUP A;  1X62 A;  1IML A;  1IBI A;  4HI8 B;  1J2O A;  4HI9 B;  3F6Q B;  1G47 A;  1WYH A;  2XJY A;  2JTN A;  1X61 A;  1RUT X;  2D8Z A;  4JCJ A;  2MBV A;  2LXD A;  2D8X A;  1X63 A;  2O13 A;  2MIU A;  2XQN T;  2L6Y B;  3IXE B;  1U5S B;  2L4Z A;  1X6A A;  3MMK A;  2DFY C;  1B8T A;  1X68 A;  2EHE A;  1NYP A;  1QLI A;  2L6Z C;  2DLO A;  1V6G A;  2DJ7 A;  2D8Y A;  1WIG A;  2DAR A;  1X3H A;  2CO8 A;  2LZU A;  1A7I A;  2KBX B;  2XJZ A;  2CUR A;  1CTL A;  2O10 A;  2IYB E;  2CUQ A; 
#chains in the Genus database with same CATH topology
 3NIS A;  4UF0 B;  1X4L A;  1IBI A;  4HI8 B;  3NIL A;  3F6Q B;  5A1L A;  5FXV A;  1X63 A;  5LKU A;  2L6Y B;  3IXE B;  4ASK A;  2DFY C;  1QLI A;  4EYU A;  2DAR A;  2LZU A;  3AVR A;  4UF0 A;  2EGQ A;  4EZ4 A;  1M3V A;  2CUP A;  5FY0 A;  5FP3 A;  1IML A;  4HI9 B;  2JTN A;  2D8Z A;  1RUT X;  3NIJ A;  2MBV A;  2O13 A;  2MIU A;  1B8T A;  2DJ7 A;  1X3H A;  2CO8 A;  5FY1 A;  2CUR A;  2O10 A;  5FYM A;  2IYB E;  2CUQ A;  5LKT A;  3ZLI A;  2COR A;  2XUE A;  5LKX A;  1J2O A;  1G47 A;  2XJY A;  4JCJ A;  2D8X A;  4BHW A;  2XQN T;  1U5S B;  1X68 A;  2EHE A;  4EZH A;  5FXZ A;  2KBX B;  1CTL A;  5FY7 A;  3ZPO A;  3NIN A;  2CU8 A;  1X64 A;  2YPA C;  1CXX A;  4KFZ A;  1X62 A;  3NIK A;  1WYH A;  1X61 A;  2LXD A;  5FXW A;  3NIH A;  3NIM A;  2L4Z A;  1X6A A;  3MMK A;  1NYP A;  5FXX A;  2L6Z C;  2DLO A;  1V6G A;  5LKZ A;  2D8Y A;  1WIG A;  3AVS A;  1A7I A;  2XJZ A; 
#chains in the Genus database with same CATH homology
 3NIS A;  4UF0 B;  1X4L A;  1IBI A;  4HI8 B;  3NIL A;  3F6Q B;  5A1L A;  5FXV A;  1X63 A;  5LKU A;  2L6Y B;  3IXE B;  4ASK A;  2DFY C;  1QLI A;  4EYU A;  2DAR A;  2LZU A;  3AVR A;  4UF0 A;  2EGQ A;  4EZ4 A;  1M3V A;  2CUP A;  5FY0 A;  5FP3 A;  1IML A;  4HI9 B;  2JTN A;  2D8Z A;  1RUT X;  3NIJ A;  2MBV A;  2O13 A;  2MIU A;  1B8T A;  2DJ7 A;  1X3H A;  2CO8 A;  5FY1 A;  2CUR A;  2O10 A;  5FYM A;  2IYB E;  2CUQ A;  5LKT A;  3ZLI A;  2COR A;  2XUE A;  5LKX A;  1J2O A;  1G47 A;  2XJY A;  4JCJ A;  2D8X A;  4BHW A;  2XQN T;  1U5S B;  1X68 A;  2EHE A;  4EZH A;  5FXZ A;  2KBX B;  1CTL A;  5FY7 A;  3ZPO A;  3NIN A;  2CU8 A;  1X64 A;  2YPA C;  1CXX A;  4KFZ A;  1X62 A;  3NIK A;  1WYH A;  1X61 A;  2LXD A;  5FXW A;  3NIH A;  3NIM A;  2L4Z A;  1X6A A;  3MMK A;  1NYP A;  5FXX A;  2L6Z C;  2DLO A;  1V6G A;  5LKZ A;  2D8Y A;  1WIG A;  3AVS A;  1A7I A;  2XJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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