1X8RA

Epsps liganded with the (s)-phosphonate analog of the tetrahedral reaction intermediate
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
427
structure length
427
Chain Sequence
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
publication title Interaction of phosphonate analogues of the tetrahedral reaction intermediate with 5-enolpyruvylshikimate-3-phosphate synthase in atomic detail.
pubmed doi rcsb
source organism Escherichia coli
total genus 155
structure length 427
sequence length 427
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1x8rA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1x8rA01
3ISSA 3V4TA 3SPBA 3KQJA 3FK0A 2PQDA 1EJDA 2GGAA 2YVWA 4E7BA 2RL1A 2QFUA 2QFQA 3SWEA 1EYNA 4E7FA 4E7CA 3FK1A 2O0BA 3SG1A 3SWGA 1G6SA 3R38A 4GFPA 5U4HA 2O0EA 3SWQA 3SWDA 1NAWA 3ZH3A 3SU9A 5BS5A 4R7UA 3FJXA 2QFTA 3KQAA 2PQ9A 1YBGA 3KR6A 4E7DA 3SWIA 5BUFA 1RF5A 1X8TA 1A2NA 2O0ZA 3ZH4A 1RYWA 3NVSA 1MI4A 3TR1A 2GG6A 3UPKA 1RF4A 1P88A 3SLHA 3VCYA 2BJBA 3FJZA 4EIIA 2AA9A 1EJCA 4EGRA 2GG4A 3SWAA 1RF6A 4ZNDA 4E7GA 1P89A 2QFSA 3ROIA 1Q3GA 3RMTA 3TI2A 1G6TA 2PQCA 2Z2CA 2PQBA 3V5VA 1Q36A 1DLGA 4FQDA 2AAYA 1X8RA 2O15A 2GGDA 2RL2A 2O0DA 2O0XA 1UAEA 4N3PA 5BQ2A 4E7EA 3LTHA
chains in the Genus database with same CATH superfamily
3ISSA 3V4TA 3SPBA 3KQJA 3FK0A 2PQDA 1EJDA 2GGAA 2YVWA 4O89A 4E7BA 2RL1A 2QFUA 2QFQA 3SWEA 4CLQA 1EYNA 4E7FA 4E7CA 3FK1A 2O0BA 3SG1A 3SWGA 1G6SA 3R38A 4GFPA 5U4HA 2O0EA 3SWQA 3SWDA 3KGDA 1NAWA 3ZH3A 3SU9A 5BS5A 4R7UA 3FJXA 2QFTA 3KQAA 2PQ9A 1YBGA 3KR6A 4E7DA 3SWIA 5BUFA 1RF5A 1X8TA 1QMIA 3PQVA 1A2NA 2O0ZA 3ZH4A 1RYWA 3NVSA 1MI4A 3TR1A 2GG6A 3UPKA 1RF4A 1P88A 3SLHA 3VCYA 2BJBA 3FJZA 4EIIA 2AA9A 1EJCA 4EGRA 2GG4A 3SWAA 1RF6A 4ZNDA 4E7GA 1P89A 2QFSA 3ROIA 1Q3GA 3TUTA 3RMTA 3TUXA 3TI2A 1G6TA 3TV1A 4O8JA 2PQCA 2Z2CA 2PQBA 3V5VA 1Q36A 1DLGA 4FQDA 2AAYA 1QMHA 1X8RA 2O15A 2GGDA 2RL2A 2O0DA 3TW3A 2O0XA 1UAEA 4N3PA 5BQ2A 4E7EA 3LTHA
chains in the Genus database with same CATH topology
3ISSA 3V4TA 3SPBA 3KQJA 3FK0A 2PQDA 1EJDA 2GGAA 2YVWA 4E7BA 2RL1A 2QFUA 2QFQA 3SWEA 1EYNA 4E7FA 4E7CA 3FK1A 2O0BA 3SG1A 3SWGA 1G6SA 3R38A 4GFPA 5U4HA 2O0EA 3SWQA 3SWDA 1NAWA 3ZH3A 3SU9A 5BS5A 4R7UA 3FJXA 2QFTA 3KQAA 2PQ9A 1YBGA 3KR6A 4E7DA 3SWIA 5BUFA 1RF5A 1X8TA 1A2NA 2O0ZA 3ZH4A 1RYWA 3NVSA 1MI4A 3TR1A 2GG6A 3UPKA 1RF4A 1P88A 3SLHA 3VCYA 2BJBA 3FJZA 4EIIA 2AA9A 1EJCA 4EGRA 2GG4A 3SWAA 1RF6A 4ZNDA 4E7GA 1P89A 2QFSA 3ROIA 1Q3GA 3RMTA 3TI2A 1G6TA 2PQCA 2Z2CA 2PQBA 3V5VA 1Q36A 1DLGA 4FQDA 2AAYA 1X8RA 2O15A 2GGDA 2RL2A 2O0DA 2O0XA 1UAEA 4N3PA 5BQ2A 4E7EA 3LTHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ISS A;  3V4T A;  3SPB A;  3KQJ A;  3FK0 A;  2PQD A;  1EJD A;  2GGA A;  2YVW A;  4E7B A;  2RL1 A;  2QFU A;  2QFQ A;  3SWE A;  1EYN A;  4E7F A;  4E7C A;  3FK1 A;  2O0B A;  3SG1 A;  3SWG A;  1G6S A;  3R38 A;  4GFP A;  5U4H A;  2O0E A;  3SWQ A;  3SWD A;  1NAW A;  3ZH3 A;  3SU9 A;  5BS5 A;  4R7U A;  3FJX A;  2QFT A;  3KQA A;  2PQ9 A;  1YBG A;  3KR6 A;  4E7D A;  3SWI A;  5BUF A;  1RF5 A;  1X8T A;  1A2N A;  2O0Z A;  3ZH4 A;  1RYW A;  3NVS A;  1MI4 A;  3TR1 A;  2GG6 A;  3UPK A;  1RF4 A;  1P88 A;  3SLH A;  3VCY A;  2BJB A;  3FJZ A;  4EII A;  2AA9 A;  1EJC A;  4EGR A;  2GG4 A;  3SWA A;  1RF6 A;  4ZND A;  4E7G A;  1P89 A;  2QFS A;  3ROI A;  1Q3G A;  3RMT A;  3TI2 A;  1G6T A;  2PQC A;  2Z2C A;  2PQB A;  3V5V A;  1Q36 A;  1DLG A;  4FQD A;  2AAY A;  1X8R A;  2O15 A;  2GGD A;  2RL2 A;  2O0D A;  2O0X A;  1UAE A;  4N3P A;  5BQ2 A;  4E7E A;  3LTH A; 
#chains in the Genus database with same CATH topology
 3ISS A;  3V4T A;  3SPB A;  3KQJ A;  3FK0 A;  2PQD A;  1EJD A;  2GGA A;  2YVW A;  4O89 A;  4E7B A;  2RL1 A;  2QFU A;  2QFQ A;  3SWE A;  4CLQ A;  1EYN A;  4E7F A;  4E7C A;  3FK1 A;  2O0B A;  3SG1 A;  3SWG A;  1G6S A;  3R38 A;  4GFP A;  5U4H A;  2O0E A;  3SWQ A;  3SWD A;  3KGD A;  1NAW A;  3ZH3 A;  3SU9 A;  5BS5 A;  4R7U A;  3FJX A;  2QFT A;  3KQA A;  2PQ9 A;  1YBG A;  3KR6 A;  4E7D A;  3SWI A;  5BUF A;  1RF5 A;  1X8T A;  1QMI A;  3PQV A;  1A2N A;  2O0Z A;  3ZH4 A;  1RYW A;  3NVS A;  1MI4 A;  3TR1 A;  2GG6 A;  3UPK A;  1RF4 A;  1P88 A;  3SLH A;  3VCY A;  2BJB A;  3FJZ A;  4EII A;  2AA9 A;  1EJC A;  4EGR A;  2GG4 A;  3SWA A;  1RF6 A;  4ZND A;  4E7G A;  1P89 A;  2QFS A;  3ROI A;  1Q3G A;  3TUT A;  3RMT A;  3TUX A;  3TI2 A;  1G6T A;  3TV1 A;  4O8J A;  2PQC A;  2Z2C A;  2PQB A;  3V5V A;  1Q36 A;  1DLG A;  4FQD A;  2AAY A;  1QMH A;  1X8R A;  2O15 A;  2GGD A;  2RL2 A;  2O0D A;  3TW3 A;  2O0X A;  1UAE A;  4N3P A;  5BQ2 A;  4E7E A;  3LTH A; 
#chains in the Genus database with same CATH homology
 3ISS A;  3V4T A;  3SPB A;  3KQJ A;  3FK0 A;  2PQD A;  1EJD A;  2GGA A;  2YVW A;  4E7B A;  2RL1 A;  2QFU A;  2QFQ A;  3SWE A;  1EYN A;  4E7F A;  4E7C A;  3FK1 A;  2O0B A;  3SG1 A;  3SWG A;  1G6S A;  3R38 A;  4GFP A;  5U4H A;  2O0E A;  3SWQ A;  3SWD A;  1NAW A;  3ZH3 A;  3SU9 A;  5BS5 A;  4R7U A;  3FJX A;  2QFT A;  3KQA A;  2PQ9 A;  1YBG A;  3KR6 A;  4E7D A;  3SWI A;  5BUF A;  1RF5 A;  1X8T A;  1A2N A;  2O0Z A;  3ZH4 A;  1RYW A;  3NVS A;  1MI4 A;  3TR1 A;  2GG6 A;  3UPK A;  1RF4 A;  1P88 A;  3SLH A;  3VCY A;  2BJB A;  3FJZ A;  4EII A;  2AA9 A;  1EJC A;  4EGR A;  2GG4 A;  3SWA A;  1RF6 A;  4ZND A;  4E7G A;  1P89 A;  2QFS A;  3ROI A;  1Q3G A;  3RMT A;  3TI2 A;  1G6T A;  2PQC A;  2Z2C A;  2PQB A;  3V5V A;  1Q36 A;  1DLG A;  4FQD A;  2AAY A;  1X8R A;  2O15 A;  2GGD A;  2RL2 A;  2O0D A;  2O0X A;  1UAE A;  4N3P A;  5BQ2 A;  4E7E A;  3LTH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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