1X8TA

Epsps liganded with the (r)-phosphonate analog of the tetrahedral reaction intermediate
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
427
structure length
427
Chain Sequence
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
publication title Interaction of phosphonate analogues of the tetrahedral reaction intermediate with 5-enolpyruvylshikimate-3-phosphate synthase in atomic detail.
pubmed doi rcsb
source organism Escherichia coli
total genus 159
structure length 427
sequence length 427
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1x8tA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1x8tA01
3SWDA 3TI2A 1DLGA 3FK1A 4E7EA 1P89A 3SPBA 4E7CA 3NVSA 2PQDA 5U4HA 2RL1A 2PQBA 3KQAA 1MI4A 4E7FA 1RYWA 2YVWA 2GG4A 5BUFA 2RL2A 3VCYA 3ZH4A 1Q36A 2Z2CA 5BS5A 3ZH3A 3FK0A 1Q3GA 3V5VA 4E7GA 3TR1A 2QFTA 2O0EA 3LTHA 3KR6A 4GFPA 1A2NA 1G6TA 1X8RA 3ROIA 2BJBA 1P88A 3SU9A 3FJZA 1RF5A 4E7BA 3SLHA 2O0XA 2GGDA 1EJCA 3FJXA 2O0DA 2O0ZA 3SWGA 3ISSA 1UAEA 3RMTA 3KQJA 4ZNDA 4N3PA 3SWEA 2AA9A 1X8TA 1YBGA 4EIIA 4E7DA 2QFQA 3SWAA 2AAYA 2PQ9A 2GG6A 4EGRA 5BQ2A 3SWQA 2QFSA 3SWIA 2PQCA 2O0BA 1G6SA 3R38A 3SG1A 1RF4A 2O15A 4FQDA 2GGAA 3V4TA 3UPKA 1NAWA 4R7UA 1RF6A 1EJDA 1EYNA 2QFUA
chains in the Genus database with same CATH superfamily
3SWDA 3TI2A 1DLGA 3FK1A 4E7EA 1P89A 3SPBA 4E7CA 3NVSA 2PQDA 5U4HA 2RL1A 2PQBA 3KQAA 1MI4A 4E7FA 1RYWA 2YVWA 2GG4A 5BUFA 2RL2A 3VCYA 3ZH4A 1Q36A 2Z2CA 5BS5A 3ZH3A 3FK0A 1Q3GA 3V5VA 4E7GA 3TR1A 2QFTA 2O0EA 3PQVA 3LTHA 3KR6A 4GFPA 1A2NA 1G6TA 1X8RA 3TUXA 3ROIA 2BJBA 1P88A 3SU9A 3FJZA 1RF5A 4E7BA 3SLHA 4CLQA 2O0XA 2GGDA 4O8JA 1EJCA 3FJXA 3TV1A 2O0DA 2O0ZA 3SWGA 3ISSA 1UAEA 3RMTA 3KQJA 4ZNDA 4N3PA 3SWEA 2AA9A 1X8TA 3TW3A 1YBGA 4EIIA 3KGDA 4E7DA 2QFQA 3SWAA 2AAYA 2PQ9A 2GG6A 4EGRA 1QMIA 5BQ2A 3SWQA 2QFSA 3TUTA 3SWIA 2PQCA 2O0BA 1G6SA 3R38A 3SG1A 1RF4A 1QMHA 2O15A 4FQDA 2GGAA 3V4TA 3UPKA 4O89A 1NAWA 4R7UA 1RF6A 1EJDA 1EYNA 2QFUA
chains in the Genus database with same CATH topology
3SWDA 3TI2A 1DLGA 3FK1A 4E7EA 1P89A 3SPBA 4E7CA 3NVSA 2PQDA 5U4HA 2RL1A 2PQBA 3KQAA 1MI4A 4E7FA 1RYWA 2YVWA 2GG4A 5BUFA 2RL2A 3VCYA 3ZH4A 1Q36A 2Z2CA 5BS5A 3ZH3A 3FK0A 1Q3GA 3V5VA 4E7GA 3TR1A 2QFTA 2O0EA 3LTHA 3KR6A 4GFPA 1A2NA 1G6TA 1X8RA 3ROIA 2BJBA 1P88A 3SU9A 3FJZA 1RF5A 4E7BA 3SLHA 2O0XA 2GGDA 1EJCA 3FJXA 2O0DA 2O0ZA 3SWGA 3ISSA 1UAEA 3RMTA 3KQJA 4ZNDA 4N3PA 3SWEA 2AA9A 1X8TA 1YBGA 4EIIA 4E7DA 2QFQA 3SWAA 2AAYA 2PQ9A 2GG6A 4EGRA 5BQ2A 3SWQA 2QFSA 3SWIA 2PQCA 2O0BA 1G6SA 3R38A 3SG1A 1RF4A 2O15A 4FQDA 2GGAA 3V4TA 3UPKA 1NAWA 4R7UA 1RF6A 1EJDA 1EYNA 2QFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SWD A;  3TI2 A;  1DLG A;  3FK1 A;  4E7E A;  1P89 A;  3SPB A;  4E7C A;  3NVS A;  2PQD A;  5U4H A;  2RL1 A;  2PQB A;  3KQA A;  1MI4 A;  4E7F A;  1RYW A;  2YVW A;  2GG4 A;  5BUF A;  2RL2 A;  3VCY A;  3ZH4 A;  1Q36 A;  2Z2C A;  5BS5 A;  3ZH3 A;  3FK0 A;  1Q3G A;  3V5V A;  4E7G A;  3TR1 A;  2QFT A;  2O0E A;  3LTH A;  3KR6 A;  4GFP A;  1A2N A;  1G6T A;  1X8R A;  3ROI A;  2BJB A;  1P88 A;  3SU9 A;  3FJZ A;  1RF5 A;  4E7B A;  3SLH A;  2O0X A;  2GGD A;  1EJC A;  3FJX A;  2O0D A;  2O0Z A;  3SWG A;  3ISS A;  1UAE A;  3RMT A;  3KQJ A;  4ZND A;  4N3P A;  3SWE A;  2AA9 A;  1X8T A;  1YBG A;  4EII A;  4E7D A;  2QFQ A;  3SWA A;  2AAY A;  2PQ9 A;  2GG6 A;  4EGR A;  5BQ2 A;  3SWQ A;  2QFS A;  3SWI A;  2PQC A;  2O0B A;  1G6S A;  3R38 A;  3SG1 A;  1RF4 A;  2O15 A;  4FQD A;  2GGA A;  3V4T A;  3UPK A;  1NAW A;  4R7U A;  1RF6 A;  1EJD A;  1EYN A;  2QFU A; 
#chains in the Genus database with same CATH topology
 3SWD A;  3TI2 A;  1DLG A;  3FK1 A;  4E7E A;  1P89 A;  3SPB A;  4E7C A;  3NVS A;  2PQD A;  5U4H A;  2RL1 A;  2PQB A;  3KQA A;  1MI4 A;  4E7F A;  1RYW A;  2YVW A;  2GG4 A;  5BUF A;  2RL2 A;  3VCY A;  3ZH4 A;  1Q36 A;  2Z2C A;  5BS5 A;  3ZH3 A;  3FK0 A;  1Q3G A;  3V5V A;  4E7G A;  3TR1 A;  2QFT A;  2O0E A;  3PQV A;  3LTH A;  3KR6 A;  4GFP A;  1A2N A;  1G6T A;  1X8R A;  3TUX A;  3ROI A;  2BJB A;  1P88 A;  3SU9 A;  3FJZ A;  1RF5 A;  4E7B A;  3SLH A;  4CLQ A;  2O0X A;  2GGD A;  4O8J A;  1EJC A;  3FJX A;  3TV1 A;  2O0D A;  2O0Z A;  3SWG A;  3ISS A;  1UAE A;  3RMT A;  3KQJ A;  4ZND A;  4N3P A;  3SWE A;  2AA9 A;  1X8T A;  3TW3 A;  1YBG A;  4EII A;  3KGD A;  4E7D A;  2QFQ A;  3SWA A;  2AAY A;  2PQ9 A;  2GG6 A;  4EGR A;  1QMI A;  5BQ2 A;  3SWQ A;  2QFS A;  3TUT A;  3SWI A;  2PQC A;  2O0B A;  1G6S A;  3R38 A;  3SG1 A;  1RF4 A;  1QMH A;  2O15 A;  4FQD A;  2GGA A;  3V4T A;  3UPK A;  4O89 A;  1NAW A;  4R7U A;  1RF6 A;  1EJD A;  1EYN A;  2QFU A; 
#chains in the Genus database with same CATH homology
 3SWD A;  3TI2 A;  1DLG A;  3FK1 A;  4E7E A;  1P89 A;  3SPB A;  4E7C A;  3NVS A;  2PQD A;  5U4H A;  2RL1 A;  2PQB A;  3KQA A;  1MI4 A;  4E7F A;  1RYW A;  2YVW A;  2GG4 A;  5BUF A;  2RL2 A;  3VCY A;  3ZH4 A;  1Q36 A;  2Z2C A;  5BS5 A;  3ZH3 A;  3FK0 A;  1Q3G A;  3V5V A;  4E7G A;  3TR1 A;  2QFT A;  2O0E A;  3LTH A;  3KR6 A;  4GFP A;  1A2N A;  1G6T A;  1X8R A;  3ROI A;  2BJB A;  1P88 A;  3SU9 A;  3FJZ A;  1RF5 A;  4E7B A;  3SLH A;  2O0X A;  2GGD A;  1EJC A;  3FJX A;  2O0D A;  2O0Z A;  3SWG A;  3ISS A;  1UAE A;  3RMT A;  3KQJ A;  4ZND A;  4N3P A;  3SWE A;  2AA9 A;  1X8T A;  1YBG A;  4EII A;  4E7D A;  2QFQ A;  3SWA A;  2AAY A;  2PQ9 A;  2GG6 A;  4EGR A;  5BQ2 A;  3SWQ A;  2QFS A;  3SWI A;  2PQC A;  2O0B A;  1G6S A;  3R38 A;  3SG1 A;  1RF4 A;  2O15 A;  4FQD A;  2GGA A;  3V4T A;  3UPK A;  1NAW A;  4R7U A;  1RF6 A;  1EJD A;  1EYN A;  2QFU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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