1X90A

Crystal structure of mutant form b of a pectin methylesterase inhibitor from arabidopsis
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
147
structure length
147
Chain Sequence
EMSTICDKTLNPSFCLKFLNTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLPRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords invertase/pectin methylesterase inhibitor family protein
publication title Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 65
structure length 147
sequence length 147
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.40 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Invertase/pectin methylesterase inhibitor family protein 1x90A00
2CJ5A 1X91A 2XQRB 2CJ8A 1RJ4A 2CJ6A 1X8ZA 1RJ1A 2CJ4A 2CJ7A 1XG2B 1X90A
chains in the Genus database with same CATH superfamily
1SK6A 4U83A 2FP1A 3UU9A 1S26A 1K8TA 2E81A 2Q8HA 2AO2A 2VF1A 3MDEA 3LG1A 4F0XA 5K3HA 3C3LA 3AFEA 2IX5A 4X28C 3C46A 1SC5A 4L3YA 2Q8IA 3SF6A 4FF4A 2YGWA 4W9UA 2EBHX 1W07A 2UXWA 3VKGA 3EONA 2Q8GA 1JM6A 2FONA 3X0XA 4WJYA 4M9AA 2VR0A 3F29A 1SIRA 2EBFX 3OIBA 3X0YA 5B6BA 3MMOA 3CE2A 3RKHA 3MKHA 3Q22A 2JBTA 3II9A 3P4TA 5B5VA 4FZ4A 5B5WA 2ZKJA 4KSFA 4X28A 2C0UA 1FS9A 2OR0A 2DVLA 1IS2A 2XS8A 4HR3A 1R2JA 4AKIA 2VIGA 4H7QA 3MXLA 1GJVA 1UDYA 3MPIA 3GM6A 4DZYA 1Y0VA 3PFDA 2PO4A 1OAHA 3D2RA 3D9GA 4Q0TA 4V26A 1XFWA 3UBRA 5K3IA 1QDBA 4H81A 2HJNA 2ZO5A 3Q24A 4G5EA 4P13A 1Y8NA 4AI6A 1T9GA 2RFQA 3D9FA 1EGDA 1RJ1A 2E80A 2OJQA 4H85A 5K3JA 4FF1A 4MPEA 2XQRB 3BNGA 1GKZA 4DOYA 5J6AA 3D9EA 2Q8FA 3HWCA 4V25A 2DDHA 5BRKA 1EGEA 2CJ7A 3D1IA 3VADA 2PG0A 5M4PA 4KCFA 2BU6A 4RM7A 2D29A 2CJ8A 2OT4A 1JQIA 3BNFA 1RJ4A 2ZDYA 1K93A 4O5MA 2XS1A 1Y8OA 3EOMA 5K3GA 4MP2A 3TZ5A 3OWMA 2JIFA 1GKXA 3GQTA 4HKSA 3TZ2A 1XFYA 2EBAA 1XFZA 3OWAA 5J71A 3D9DA 1UKWA 4ZXVA 1GU6A 2ZDXA 1LVCA 3FCJA 3D6BA 2FP2A 4XVXA 4AKHA 1WS9A 4Q17A 1PK0A 2E0AA 4AKGA 2Z1QA 3R7KA 4ZYJA 2CJ6A 1X8ZA 2R0MA 3GNCA 3N0RA 3TTBA 2REHA 4E02A 3NF4A 4Q1OA 3Q23A 4LQQB 4MP7A 2BU2A 2AZEA 4LQSB 3C2PA 3BNJA 3KMLA 1X91A 2WBIA 2A1TA 5GJVE 2F6LA 4KSAA 4HKRA 2R02A 1FS8A 1PI1A 2RF7A 4FF3A 4Q5BA 2CJ5A 4KTOA 2CX9A 4L3XA 3FO3A 5M4KA 2BU8A 2IX6A 4Q4UA 4QICA 3SCEA 1K90A 2GBBA 3Q0AA 4L38A 1SIQA 4Q5CA 1XFUA 1Y8PA 2YYJA 2R03A 3MPJA 1FS7A 2CJ4A 3AFFA 4N5FA 2BU5A 3TZ0A 4E01A 1U8VA 1BUCA 4JEKA 2LFWA 2JBRA 4E00A 1XFVA 4KS9A 5M4MA 4J1VA 2BU7A 1RX0A 3M9VA 3TZ4A 3X29A 5M4NA 3VKHA 2YYLA 3LGQA 5BRMA 3L1TA 3SXQA 1IVHA 2PNRA 2RDZA 3B96A 4L1FA 2BTZA 3SWOA 4MPNA 2C12A 4JIOA 1XFXA 2YYKA 5GJWE 4IV6A 2QR4A 3CRLA 4P79A 4OO2A 4MPCA 2EC5A 4NXLA 1RP3A 4IRNA 1XG2B 4FF2A 2R0NA 4G97A 2YYIA 2ZAFA 3TORA 2YYGA 2YYMA 1R3BA 2OEXA 3BNHA 3CRKA 2JBSA 2R05A 3S7WA 2OEVA 1EGCA 3MDDA 1X90A 4JIZA 2J7AA 4L3ZA
chains in the Genus database with same CATH topology
2CJ5A 1X91A 2XQRB 2CJ8A 1RJ4A 2CJ6A 1X8ZA 1RJ1A 2CJ4A 2CJ7A 1XG2B 1X90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CJ5 A;  1X91 A;  2XQR B;  2CJ8 A;  1RJ4 A;  2CJ6 A;  1X8Z A;  1RJ1 A;  2CJ4 A;  2CJ7 A;  1XG2 B;  1X90 A; 
#chains in the Genus database with same CATH topology
 1SK6 A;  4U83 A;  2FP1 A;  3UU9 A;  1S26 A;  1K8T A;  2E81 A;  2Q8H A;  2AO2 A;  2VF1 A;  3MDE A;  3LG1 A;  4F0X A;  5K3H A;  3C3L A;  3AFE A;  2IX5 A;  4X28 C;  3C46 A;  1SC5 A;  4L3Y A;  2Q8I A;  3SF6 A;  4FF4 A;  2YGW A;  4W9U A;  2EBH X;  1W07 A;  2UXW A;  3VKG A;  3EON A;  2Q8G A;  1JM6 A;  2FON A;  3X0X A;  4WJY A;  4M9A A;  2VR0 A;  3F29 A;  1SIR A;  2EBF X;  3OIB A;  3X0Y A;  5B6B A;  3MMO A;  3CE2 A;  3RKH A;  3MKH A;  3Q22 A;  2JBT A;  3II9 A;  3P4T A;  5B5V A;  4FZ4 A;  5B5W A;  2ZKJ A;  4KSF A;  4X28 A;  2C0U A;  1FS9 A;  2OR0 A;  2DVL A;  1IS2 A;  2XS8 A;  4HR3 A;  1R2J A;  4AKI A;  2VIG A;  4H7Q A;  3MXL A;  1GJV A;  1UDY A;  3MPI A;  3GM6 A;  4DZY A;  1Y0V A;  3PFD A;  2PO4 A;  1OAH A;  3D2R A;  3D9G A;  4Q0T A;  4V26 A;  1XFW A;  3UBR A;  5K3I A;  1QDB A;  4H81 A;  2HJN A;  2ZO5 A;  3Q24 A;  4G5E A;  4P13 A;  1Y8N A;  4AI6 A;  1T9G A;  2RFQ A;  3D9F A;  1EGD A;  1RJ1 A;  2E80 A;  2OJQ A;  4H85 A;  5K3J A;  4FF1 A;  4MPE A;  2XQR B;  3BNG A;  1GKZ A;  4DOY A;  5J6A A;  3D9E A;  2Q8F A;  3HWC A;  4V25 A;  2DDH A;  5BRK A;  1EGE A;  2CJ7 A;  3D1I A;  3VAD A;  2PG0 A;  5M4P A;  4KCF A;  2BU6 A;  4RM7 A;  2D29 A;  2CJ8 A;  2OT4 A;  1JQI A;  3BNF A;  1RJ4 A;  2ZDY A;  1K93 A;  4O5M A;  2XS1 A;  1Y8O A;  3EOM A;  5K3G A;  4MP2 A;  3TZ5 A;  3OWM A;  2JIF A;  1GKX A;  3GQT A;  4HKS A;  3TZ2 A;  1XFY A;  2EBA A;  1XFZ A;  3OWA A;  5J71 A;  3D9D A;  1UKW A;  4ZXV A;  1GU6 A;  2ZDX A;  1LVC A;  3FCJ A;  3D6B A;  2FP2 A;  4XVX A;  4AKH A;  1WS9 A;  4Q17 A;  1PK0 A;  2E0A A;  4AKG A;  2Z1Q A;  3R7K A;  4ZYJ A;  2CJ6 A;  1X8Z A;  2R0M A;  3GNC A;  3N0R A;  3TTB A;  2REH A;  4E02 A;  3NF4 A;  4Q1O A;  3Q23 A;  4LQQ B;  4MP7 A;  2BU2 A;  2AZE A;  4LQS B;  3C2P A;  3BNJ A;  3KML A;  1X91 A;  2WBI A;  2A1T A;  5GJV E;  2F6L A;  4KSA A;  4HKR A;  2R02 A;  1FS8 A;  1PI1 A;  2RF7 A;  4FF3 A;  4Q5B A;  2CJ5 A;  4KTO A;  2CX9 A;  4L3X A;  3FO3 A;  5M4K A;  2BU8 A;  2IX6 A;  4Q4U A;  4QIC A;  3SCE A;  1K90 A;  2GBB A;  3Q0A A;  4L38 A;  1SIQ A;  4Q5C A;  1XFU A;  1Y8P A;  2YYJ A;  2R03 A;  3MPJ A;  1FS7 A;  2CJ4 A;  3AFF A;  4N5F A;  2BU5 A;  3TZ0 A;  4E01 A;  1U8V A;  1BUC A;  4JEK A;  2LFW A;  2JBR A;  4E00 A;  1XFV A;  4KS9 A;  5M4M A;  4J1V A;  2BU7 A;  1RX0 A;  3M9V A;  3TZ4 A;  3X29 A;  5M4N A;  3VKH A;  2YYL A;  3LGQ A;  5BRM A;  3L1T A;  3SXQ A;  1IVH A;  2PNR A;  2RDZ A;  3B96 A;  4L1F A;  2BTZ A;  3SWO A;  4MPN A;  2C12 A;  4JIO A;  1XFX A;  2YYK A;  5GJW E;  4IV6 A;  2QR4 A;  3CRL A;  4P79 A;  4OO2 A;  4MPC A;  2EC5 A;  4NXL A;  1RP3 A;  4IRN A;  1XG2 B;  4FF2 A;  2R0N A;  4G97 A;  2YYI A;  2ZAF A;  3TOR A;  2YYG A;  2YYM A;  1R3B A;  2OEX A;  3BNH A;  3CRK A;  2JBS A;  2R05 A;  3S7W A;  2OEV A;  1EGC A;  3MDD A;  1X90 A;  4JIZ A;  2J7A A;  4L3Z A; 
#chains in the Genus database with same CATH homology
 2CJ5 A;  1X91 A;  2XQR B;  2CJ8 A;  1RJ4 A;  2CJ6 A;  1X8Z A;  1RJ1 A;  2CJ4 A;  2CJ7 A;  1XG2 B;  1X90 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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