1XACA

Chimera isopropylmalate dehydrogenase between bacillus subtilis (m) and thermus thermophilus (t) from n-terminal: 20% t middle 20% m residual 60% t, mutated at s82r. low temperature (100k) structure.
Total Genus 115
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
345
structure length
345
Chain Sequence
MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords 3-ISOPROPYLMALATE DEHYDROGENASE 2T2M6T S82R
publication title Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 115
structure length 345
sequence length 345
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 1995-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1xacA00
3R8WA 5I95A 1IPDA 1TYOA 4ICDA 5K10A 4P69C 1W0DA 1V53A 4AJAA 1CW4A 1GC8A 4I3LA 5J34A 1DR8A 5I96A 1XACA 5GRLA 1GRPA 4I3KA 4XS3A 4L04A 1T0LA 2AYQA 4Y1PA 3TY3A 4F7IA 3FMXX 2E5MA 1U7NA 4JA8A 1AI3A 1PS6A 3VL4A 1IDFA 1AI2A 5DE1A 3MARA 3VL2A 3MAPA 2D1CA 2QFYA 3BLVA 3TY4A 9ICDA 3TSNA 5GRHA 1HJ6A 1VI1A 1WALA 5HN4A 1HQSA 1XGVA 2UXQA 1SJSA 4AJRA 4AOYA 3BLVB 5K11A 5ICDA 3VL3A 5GRHB 3UDUA 1IKAA 3ICDA 1GROA 1IDDA 4XXVA 2QFVA 2Y41A 1YXOA 2HI1A 4UMYA 2DHTA 2QFXA 3ASJA 2Y40A 1X0LA 4AJSA 1P8FA 3VMJA 1IDEA 3WZVA 3FLKA 2D4VA 1WPWA 4JQPA 1CNZA 1DPZA 3VL6A 5J33A 5GREA 5HN3A 1PTMA 5J32A 1PB1A 2QFWA 5L58A 1OSJA 3AH3A 6ICDA 1XADA 4L03A 4WUOA 1OSIA 2G4OA 4AJ3A 5GREB 3VL7A 4AJBA 1R8KA 3TNGA 3VMLA 3VKZA 5GRFA 4AJCA 2IV0A 5HN5A 1ISOA 1ZORA 1YCOA 1V5BA 3MASA 2E0CA 4HCXA 3WZWA 3UDOA 3VMKA 8ICDA 1CW7A 3US8A 7ICDA 1T09A 3LXYA 3U9EA 1PB3A 2ZTWA 4BNPA 1IDCA 5GRFB 4AOUA 1PS7A 4L06A 5GRIA 1LWDA 3LCBC 3MASB 5L57A 1CM7A 3DMSA 4YB4A 4UMXA 1VLCA 3U1HA 3INMA 5GRIB 2Y42A 1BL5A 3BLXA 3WZYA 4XRXA 3UF6A 1GC9A 3WZXA 1DR0A 4KZOA 1HEXA 1XKDA 1V94A 5GRLB 2UXRA 3BLXB 4ATYA 2Y3ZA 1IDMA 4AOVA 1XABA 1G2UA 5LGEA 1A05A 1CW1A 1XAAA 4IWHA 5HN6A
chains in the Genus database with same CATH superfamily
3R8WA 5I95A 1IPDA 1TYOA 4ICDA 5K10A 4P69C 1W0DA 1V53A 4AJAA 1CW4A 1GC8A 4I3LA 5J34A 1DR8A 5I96A 1XACA 5GRLA 1GRPA 4I3KA 4XS3A 4L04A 1T0LA 2AYQA 4Y1PA 3TY3A 4F7IA 3FMXX 2E5MA 1U7NA 4JA8A 1AI3A 1PS6A 3VL4A 1IDFA 1AI2A 5DE1A 3MARA 3VL2A 3MAPA 2D1CA 2QFYA 3BLVA 3TY4A 9ICDA 3TSNA 5GRHA 1HJ6A 1VI1A 1WALA 5HN4A 1HQSA 1XGVA 2UXQA 1SJSA 4AJRA 4AOYA 3BLVB 5K11A 5ICDA 3VL3A 5GRHB 3UDUA 1IKAA 3ICDA 1GROA 1IDDA 4XXVA 2QFVA 2Y41A 1YXOA 2HI1A 4UMYA 2DHTA 2QFXA 3ASJA 2Y40A 1X0LA 4AJSA 1P8FA 3VMJA 1IDEA 3WZVA 3FLKA 2D4VA 1WPWA 4JQPA 1CNZA 1DPZA 3VL6A 5J33A 5GREA 5HN3A 1PTMA 5J32A 1PB1A 2QFWA 5L58A 1OSJA 3AH3A 6ICDA 1XADA 4L03A 4WUOA 1OSIA 2G4OA 4AJ3A 5GREB 3VL7A 4AJBA 1R8KA 3TNGA 3VMLA 3VKZA 5GRFA 4AJCA 2IV0A 5HN5A 1ISOA 1ZORA 1YCOA 1V5BA 3MASA 2E0CA 4HCXA 3WZWA 3UDOA 3VMKA 8ICDA 1CW7A 3US8A 7ICDA 1T09A 3LXYA 3U9EA 1PB3A 2ZTWA 4BNPA 1IDCA 5GRFB 4AOUA 1PS7A 4L06A 5GRIA 1LWDA 3LCBC 3MASB 5L57A 1CM7A 3DMSA 4YB4A 4UMXA 1VLCA 3U1HA 3INMA 5GRIB 2Y42A 1BL5A 3BLXA 3WZYA 4XRXA 3UF6A 1GC9A 3WZXA 1DR0A 4KZOA 1HEXA 1XKDA 1V94A 5GRLB 2UXRA 3BLXB 4ATYA 2Y3ZA 1IDMA 4AOVA 1XABA 1G2UA 5LGEA 1A05A 1CW1A 1XAAA 4IWHA 5HN6A
chains in the Genus database with same CATH topology
3R8WA 5I95A 1IPDA 1TYOA 4ICDA 5K10A 4P69C 1W0DA 1V53A 4AJAA 1CW4A 1GC8A 4I3LA 5J34A 1DR8A 5I96A 1XACA 5GRLA 1GRPA 4I3KA 4XS3A 4L04A 1T0LA 2AYQA 4Y1PA 3TY3A 4F7IA 3FMXX 2E5MA 1U7NA 4JA8A 1AI3A 1PS6A 3VL4A 1IDFA 1AI2A 5DE1A 3MARA 3VL2A 3MAPA 2D1CA 2QFYA 3BLVA 3TY4A 9ICDA 3TSNA 5GRHA 1HJ6A 1VI1A 1WALA 5HN4A 1HQSA 1XGVA 2UXQA 1SJSA 4AJRA 4AOYA 3BLVB 5K11A 5ICDA 3VL3A 5GRHB 3UDUA 1IKAA 3ICDA 1GROA 1IDDA 4XXVA 2QFVA 2Y41A 1YXOA 2HI1A 4UMYA 2DHTA 2QFXA 3ASJA 2Y40A 1X0LA 4AJSA 1P8FA 3VMJA 1IDEA 3WZVA 3FLKA 2D4VA 1WPWA 4JQPA 1CNZA 1DPZA 3VL6A 5J33A 5GREA 5HN3A 1PTMA 5J32A 1PB1A 2QFWA 5L58A 1OSJA 3AH3A 6ICDA 1XADA 4L03A 4WUOA 1OSIA 2G4OA 4AJ3A 5GREB 3VL7A 4AJBA 1R8KA 3TNGA 3VMLA 3VKZA 5GRFA 4AJCA 2IV0A 5HN5A 1ISOA 1ZORA 1YCOA 1V5BA 3MASA 2E0CA 4HCXA 3WZWA 3UDOA 3VMKA 8ICDA 1CW7A 3US8A 7ICDA 1T09A 3LXYA 3U9EA 1PB3A 2ZTWA 4BNPA 1IDCA 5GRFB 4AOUA 1PS7A 4L06A 5GRIA 1LWDA 3LCBC 3MASB 5L57A 1CM7A 3DMSA 4YB4A 4UMXA 1VLCA 3U1HA 3INMA 5GRIB 2Y42A 1BL5A 3BLXA 3WZYA 4XRXA 3UF6A 1GC9A 3WZXA 1DR0A 4KZOA 1HEXA 1XKDA 1V94A 5GRLB 2UXRA 3BLXB 4ATYA 2Y3ZA 1IDMA 4AOVA 1XABA 1G2UA 5LGEA 1A05A 1CW1A 1XAAA 4IWHA 5HN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R8W A;  5I95 A;  1IPD A;  1TYO A;  4ICD A;  5K10 A;  4P69 C;  1W0D A;  1V53 A;  4AJA A;  1CW4 A;  1GC8 A;  4I3L A;  5J34 A;  1DR8 A;  5I96 A;  1XAC A;  5GRL A;  1GRP A;  4I3K A;  4XS3 A;  4L04 A;  1T0L A;  2AYQ A;  4Y1P A;  3TY3 A;  4F7I A;  3FMX X;  2E5M A;  1U7N A;  4JA8 A;  1AI3 A;  1PS6 A;  3VL4 A;  1IDF A;  1AI2 A;  5DE1 A;  3MAR A;  3VL2 A;  3MAP A;  2D1C A;  2QFY A;  3BLV A;  3TY4 A;  9ICD A;  3TSN A;  5GRH A;  1HJ6 A;  1VI1 A;  1WAL A;  5HN4 A;  1HQS A;  1XGV A;  2UXQ A;  1SJS A;  4AJR A;  4AOY A;  3BLV B;  5K11 A;  5ICD A;  3VL3 A;  5GRH B;  3UDU A;  1IKA A;  3ICD A;  1GRO A;  1IDD A;  4XXV A;  2QFV A;  2Y41 A;  1YXO A;  2HI1 A;  4UMY A;  2DHT A;  2QFX A;  3ASJ A;  2Y40 A;  1X0L A;  4AJS A;  1P8F A;  3VMJ A;  1IDE A;  3WZV A;  3FLK A;  2D4V A;  1WPW A;  4JQP A;  1CNZ A;  1DPZ A;  3VL6 A;  5J33 A;  5GRE A;  5HN3 A;  1PTM A;  5J32 A;  1PB1 A;  2QFW A;  5L58 A;  1OSJ A;  3AH3 A;  6ICD A;  1XAD A;  4L03 A;  4WUO A;  1OSI A;  2G4O A;  4AJ3 A;  5GRE B;  3VL7 A;  4AJB A;  1R8K A;  3TNG A;  3VML A;  3VKZ A;  5GRF A;  4AJC A;  2IV0 A;  5HN5 A;  1ISO A;  1ZOR A;  1YCO A;  1V5B A;  3MAS A;  2E0C A;  4HCX A;  3WZW A;  3UDO A;  3VMK A;  8ICD A;  1CW7 A;  3US8 A;  7ICD A;  1T09 A;  3LXY A;  3U9E A;  1PB3 A;  2ZTW A;  4BNP A;  1IDC A;  5GRF B;  4AOU A;  1PS7 A;  4L06 A;  5GRI A;  1LWD A;  3LCB C;  3MAS B;  5L57 A;  1CM7 A;  3DMS A;  4YB4 A;  4UMX A;  1VLC A;  3U1H A;  3INM A;  5GRI B;  2Y42 A;  1BL5 A;  3BLX A;  3WZY A;  4XRX A;  3UF6 A;  1GC9 A;  3WZX A;  1DR0 A;  4KZO A;  1HEX A;  1XKD A;  1V94 A;  5GRL B;  2UXR A;  3BLX B;  4ATY A;  2Y3Z A;  1IDM A;  4AOV A;  1XAB A;  1G2U A;  5LGE A;  1A05 A;  1CW1 A;  1XAA A;  4IWH A;  5HN6 A; 
#chains in the Genus database with same CATH topology
 3R8W A;  5I95 A;  1IPD A;  1TYO A;  4ICD A;  5K10 A;  4P69 C;  1W0D A;  1V53 A;  4AJA A;  1CW4 A;  1GC8 A;  4I3L A;  5J34 A;  1DR8 A;  5I96 A;  1XAC A;  5GRL A;  1GRP A;  4I3K A;  4XS3 A;  4L04 A;  1T0L A;  2AYQ A;  4Y1P A;  3TY3 A;  4F7I A;  3FMX X;  2E5M A;  1U7N A;  4JA8 A;  1AI3 A;  1PS6 A;  3VL4 A;  1IDF A;  1AI2 A;  5DE1 A;  3MAR A;  3VL2 A;  3MAP A;  2D1C A;  2QFY A;  3BLV A;  3TY4 A;  9ICD A;  3TSN A;  5GRH A;  1HJ6 A;  1VI1 A;  1WAL A;  5HN4 A;  1HQS A;  1XGV A;  2UXQ A;  1SJS A;  4AJR A;  4AOY A;  3BLV B;  5K11 A;  5ICD A;  3VL3 A;  5GRH B;  3UDU A;  1IKA A;  3ICD A;  1GRO A;  1IDD A;  4XXV A;  2QFV A;  2Y41 A;  1YXO A;  2HI1 A;  4UMY A;  2DHT A;  2QFX A;  3ASJ A;  2Y40 A;  1X0L A;  4AJS A;  1P8F A;  3VMJ A;  1IDE A;  3WZV A;  3FLK A;  2D4V A;  1WPW A;  4JQP A;  1CNZ A;  1DPZ A;  3VL6 A;  5J33 A;  5GRE A;  5HN3 A;  1PTM A;  5J32 A;  1PB1 A;  2QFW A;  5L58 A;  1OSJ A;  3AH3 A;  6ICD A;  1XAD A;  4L03 A;  4WUO A;  1OSI A;  2G4O A;  4AJ3 A;  5GRE B;  3VL7 A;  4AJB A;  1R8K A;  3TNG A;  3VML A;  3VKZ A;  5GRF A;  4AJC A;  2IV0 A;  5HN5 A;  1ISO A;  1ZOR A;  1YCO A;  1V5B A;  3MAS A;  2E0C A;  4HCX A;  3WZW A;  3UDO A;  3VMK A;  8ICD A;  1CW7 A;  3US8 A;  7ICD A;  1T09 A;  3LXY A;  3U9E A;  1PB3 A;  2ZTW A;  4BNP A;  1IDC A;  5GRF B;  4AOU A;  1PS7 A;  4L06 A;  5GRI A;  1LWD A;  3LCB C;  3MAS B;  5L57 A;  1CM7 A;  3DMS A;  4YB4 A;  4UMX A;  1VLC A;  3U1H A;  3INM A;  5GRI B;  2Y42 A;  1BL5 A;  3BLX A;  3WZY A;  4XRX A;  3UF6 A;  1GC9 A;  3WZX A;  1DR0 A;  4KZO A;  1HEX A;  1XKD A;  1V94 A;  5GRL B;  2UXR A;  3BLX B;  4ATY A;  2Y3Z A;  1IDM A;  4AOV A;  1XAB A;  1G2U A;  5LGE A;  1A05 A;  1CW1 A;  1XAA A;  4IWH A;  5HN6 A; 
#chains in the Genus database with same CATH homology
 3R8W A;  5I95 A;  1IPD A;  1TYO A;  4ICD A;  5K10 A;  4P69 C;  1W0D A;  1V53 A;  4AJA A;  1CW4 A;  1GC8 A;  4I3L A;  5J34 A;  1DR8 A;  5I96 A;  1XAC A;  5GRL A;  1GRP A;  4I3K A;  4XS3 A;  4L04 A;  1T0L A;  2AYQ A;  4Y1P A;  3TY3 A;  4F7I A;  3FMX X;  2E5M A;  1U7N A;  4JA8 A;  1AI3 A;  1PS6 A;  3VL4 A;  1IDF A;  1AI2 A;  5DE1 A;  3MAR A;  3VL2 A;  3MAP A;  2D1C A;  2QFY A;  3BLV A;  3TY4 A;  9ICD A;  3TSN A;  5GRH A;  1HJ6 A;  1VI1 A;  1WAL A;  5HN4 A;  1HQS A;  1XGV A;  2UXQ A;  1SJS A;  4AJR A;  4AOY A;  3BLV B;  5K11 A;  5ICD A;  3VL3 A;  5GRH B;  3UDU A;  1IKA A;  3ICD A;  1GRO A;  1IDD A;  4XXV A;  2QFV A;  2Y41 A;  1YXO A;  2HI1 A;  4UMY A;  2DHT A;  2QFX A;  3ASJ A;  2Y40 A;  1X0L A;  4AJS A;  1P8F A;  3VMJ A;  1IDE A;  3WZV A;  3FLK A;  2D4V A;  1WPW A;  4JQP A;  1CNZ A;  1DPZ A;  3VL6 A;  5J33 A;  5GRE A;  5HN3 A;  1PTM A;  5J32 A;  1PB1 A;  2QFW A;  5L58 A;  1OSJ A;  3AH3 A;  6ICD A;  1XAD A;  4L03 A;  4WUO A;  1OSI A;  2G4O A;  4AJ3 A;  5GRE B;  3VL7 A;  4AJB A;  1R8K A;  3TNG A;  3VML A;  3VKZ A;  5GRF A;  4AJC A;  2IV0 A;  5HN5 A;  1ISO A;  1ZOR A;  1YCO A;  1V5B A;  3MAS A;  2E0C A;  4HCX A;  3WZW A;  3UDO A;  3VMK A;  8ICD A;  1CW7 A;  3US8 A;  7ICD A;  1T09 A;  3LXY A;  3U9E A;  1PB3 A;  2ZTW A;  4BNP A;  1IDC A;  5GRF B;  4AOU A;  1PS7 A;  4L06 A;  5GRI A;  1LWD A;  3LCB C;  3MAS B;  5L57 A;  1CM7 A;  3DMS A;  4YB4 A;  4UMX A;  1VLC A;  3U1H A;  3INM A;  5GRI B;  2Y42 A;  1BL5 A;  3BLX A;  3WZY A;  4XRX A;  3UF6 A;  1GC9 A;  3WZX A;  1DR0 A;  4KZO A;  1HEX A;  1XKD A;  1V94 A;  5GRL B;  2UXR A;  3BLX B;  4ATY A;  2Y3Z A;  1IDM A;  4AOV A;  1XAB A;  1G2U A;  5LGE A;  1A05 A;  1CW1 A;  1XAA A;  4IWH A;  5HN6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...