1XAXA

Nmr structure of hi0004, a putative essential gene product from haemophilus influenzae
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
144
structure length
144
Chain Sequence
b'SVLVDLQIATENIEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHELNLTYRGKDRPTNVLSFPFECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical UPF0054 protein HI0004
publication title NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Structural genomics, unknown function
total genus 30
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2004-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02130 UPF0054 Uncharacterized protein family UPF0054
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.390.30 Alpha Beta 3-Layer(aba) Sandwich Collagenase (Catalytic Domain) Metalloproteases ("zincins"), catalytic domain 1xaxA00
1XM5A 1OZ9A 1TVIA 1XAXA
chains in the Genus database with same CATH superfamily
2SRTA 1DMTA 1AF0A 1D8FA 2MZIA 4DF9A 2RJQA 3EDZA 1J7NA 3HY9A 2K9CA 1OS9A 2Z2DA 2MLRA 4PKTA 4CTHA 2EROA 4H2EA 1XM5A 1EUBA 4EFSA 1SLMA 1FM1A 3KRYA 456CA 1CQRA 1MMQA 1UTTA 1BIWA 4PKSA 2O36A 3LK8A 4FVLA 1ZS0A 2L0RA 4XBHA 2POJA 2RJPA 5L79A 3MA2A 3V96B 1IADA 1G4KA 1R1HA 1BUDA 1GE5A 1O0TA 1PWQA 1UTZA 1BM6A 3HDAP 2AYKA 3LKAA 5I0LA 2Y6DA 1GE7A 3SHIA 4L19A 3LUNA 3ZVSA 1MMRA 1ZTQA 3N2VA 1QICA 2OXZA 2X3AA 1CK7A 5D7WA 1A86A 2JIHA 2I47A 2DW1A 2HU6A 1HFSA 1QJJA 3AYKA 4GR8A 1SU3A 3DL1A 3EDGA 1ZVXA 3OHLA 1K7GA 2MLSA 4WZVA 4H30A 2OI0A 1XUDA 3B2ZA 1D8MA 1KUKA 4H3XA 1AKLA 3L0TA 3KMCA 1C8TA 3G42A 3TS4A 2CKIA 3HBVP 1KUIA 1A85A 1OM8A 2OW0A 1FBLA 4I35A 2X3BA 5D1TA 1GO8P 1HTDA 3GBOA 830CA 4GR0A 4G0DA 4HMAA 4J4MA 1IAEA 3B92A 4Q1LA 5BOYA 2OXUA 2D1OA 2V4BA 3CKIA 2FV5A 1CAQA 3WV3A 3AYUA 1PWPA 4H76A 2JT6A 2O3EA 1OM7A 4FU4A 4PKQA 2JT5A 3EHYA 1KAPP 4A3WA 4WK7A 2WO8A 3AIGA 1XFWA 1K7IA 1R1JA 2OXWA 3LEAA 3DPFA 3DPEA 1BSWA 1G05A 2OZRA 1OZ9A 3F19A 1SATA 1BQOA 5BOTA 2W12A 2J0TA 2OW1A 2DDYA 3NX7A 1ND1A 1USNA 3LIKA 1OMJA 4IN9A 1CGFA 4L63A 3B8ZA 2MZEA 3F16A 2USNA 1GKCA 2E2DA 1SLNA 1TVIA 1K7QA 2OW9A 2A8HA 5H8XA 1MNCA 4GQLA 1JK3A 4WF6A 1R55A 1PWWA 3LMCA 1MMBA 3VI1A 2CLTA 2TCLA 4PKUA 1QIAA 1S4BP 1GO7P 3E8RA 966CA 1KUGA 2N8RA 3F1AA 1XAXA 1BKCA 2XS3A 4H49A 1H71P 2W13A 3DWBA 3U1RA 1I76A 1O0QA 3LJZA 3ZUKA 5L7FA 5JMYA 2OY2A 1ZP5A 4R3VA 3LQBA 4FXQA 2OW2A 3Q2GA 1B3DA 5D1UA 2D1NA 5I3MA 3F15A 4I03A 4AXQA 2XS4A 3HY7A 1PWUA 4H84A 1ZXCA 3HBUP 3EWJA 1CIZA 1BQQM 1RMZA 2X3CA 4DV8A 3BA0A 1JANA 1UMSA 2YIGA 3LIRA 4ZR5A 2KRJA 3TVCA 1ROSA 3RTTA 2W0DA 4JP4A 1GXDA 4PKVA 5I12A 4GWNA 3DTKA 4JA1A 1YQYA 3HB2P 3KHIA 4H1QA 4GUYA 4XM8A 4H82A 1IACA 2OY4A 1QUAA 4JIJA 1XURA 1ZXVA 2ERQA 1Y8JA 2DDFA 3EDHA 1B8YA 4XCTA 5B5PA 1HOVA 2WO9A 2OVXA 1GKDA 3TT4A 3ZXHA 4L7AA 1JIZA 4L6TA 4ON1A 3P24A 4G9LA 2FV9A 5I43A 2YUFA 4XM7A 2OVZA 1G9KA 3KECA 3K7NA 1EAKA 2WOAA 3I7GA 1OM6A 3VTGA 2DW0A 4QKZA 3K7LA 1UEAA 3LGPA 3KWVC 1C7KA 1Z3JA 1CGLA 2AIGP 1JH1A 3LJGA 4DD8A 1JAPA 2MZHA 1JKYA 1ASTA 1C3IA 5LABA 3F18A 4PKWA 1MMPA 1IAAA 1ATLA 3O64A 4HX3A 5CUHA 2PJTA 1G49A 1JIWP 1KUFA 4AIGA 3G5CA 3O2XA 3UVCA 4IUWA 1QJIA 4DPEA 1GE6A 4AYKA 3RTSA 5D3CA 3EHXA 3KEKA 3DSLA 5D1SA 2JSDA 1BZSA 1JJ9A 3KMEA 1IAGA 3USNA 1L6JA 3DNGA 2ERPA 3N2UA 1KBCA 1Y0VA 2YB9A 3WV1A 3HYGA 2QPJA 1YP1A 4XM6A 2J83A 1BKCE 1AYKA 3Q2HA 2DW2A 5B5OA 4GWMA 5D2BA 3HDBA 1CGEA 1DTHA 4ILWD 1XFVA 4IJOA 1I73A 1R1IA 1JAOA 3LILA 1IABA 1HV5A 2X7MA 1HY7A 2W15A 3LJTA 1I1IP 1OO9A 3F17A 3TSKA 1G12A 1YCMA 3P1VA 4AUOA 2W14A 1D5JA 3OHOA 1BKCI 1PWVA 1BUVM 1OS2A 1CXVA 2JNPA 3DTEA 1FLSA 1Y93A 5BPAA 3L0VA 4A7BA 2K2GA 1JAQA 1EB6A 1XFUA 1QIBA 4WKIA 1RM8A 1XFXA 5CZMA 3WV2A 1SRPA 4PKRA 4GR3A 1XUCA 1D7XA 1KUHA 4WKEA 1HFCA 3DTIA 4JPAA 1YOUA 4GF1A 5CXAA 4JQGA 1Q3AA 3LUMA 2E3XA 1XFZA 3ELMA 1R54A 2Y6CA 5I2ZA 1SMPA 3KEJA 3I7IA 3EDIA 1XFYA 1UMTA 1WNIA 4FXYP 3LQ0A 5I4OA 3LE9A
chains in the Genus database with same CATH topology
2YPTA 1XM5A 3CQBA 1XAXA 4JIUA 4IL3A 1TVIA 4JIXA 1OZ9A 4AW6A 4QHFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XM5 A;  1OZ9 A;  1TVI A;  1XAX A; 
#chains in the Genus database with same CATH topology
 2SRT A;  1DMT A;  1AF0 A;  1D8F A;  2MZI A;  4DF9 A;  2RJQ A;  3EDZ A;  1J7N A;  3HY9 A;  2K9C A;  1OS9 A;  2Z2D A;  2MLR A;  4PKT A;  4CTH A;  2ERO A;  4H2E A;  1XM5 A;  1EUB A;  4EFS A;  1SLM A;  1FM1 A;  3KRY A;  456C A;  1CQR A;  1MMQ A;  1UTT A;  1BIW A;  4PKS A;  2O36 A;  3LK8 A;  4FVL A;  1ZS0 A;  2L0R A;  4XBH A;  2POJ A;  2RJP A;  5L79 A;  3MA2 A;  3V96 B;  1IAD A;  1G4K A;  1R1H A;  1BUD A;  1GE5 A;  1O0T A;  1PWQ A;  1UTZ A;  1BM6 A;  3HDA P;  2AYK A;  3LKA A;  5I0L A;  2Y6D A;  1GE7 A;  3SHI A;  4L19 A;  3LUN A;  3ZVS A;  1MMR A;  1ZTQ A;  3N2V A;  1QIC A;  2OXZ A;  2X3A A;  1CK7 A;  5D7W A;  1A86 A;  2JIH A;  2I47 A;  2DW1 A;  2HU6 A;  1HFS A;  1QJJ A;  3AYK A;  4GR8 A;  1SU3 A;  3DL1 A;  3EDG A;  1ZVX A;  3OHL A;  1K7G A;  2MLS A;  4WZV A;  4H30 A;  2OI0 A;  1XUD A;  3B2Z A;  1D8M A;  1KUK A;  4H3X A;  1AKL A;  3L0T A;  3KMC A;  1C8T A;  3G42 A;  3TS4 A;  2CKI A;  3HBV P;  1KUI A;  1A85 A;  1OM8 A;  2OW0 A;  1FBL A;  4I35 A;  2X3B A;  5D1T A;  1GO8 P;  1HTD A;  3GBO A;  830C A;  4GR0 A;  4G0D A;  4HMA A;  4J4M A;  1IAE A;  3B92 A;  4Q1L A;  5BOY A;  2OXU A;  2D1O A;  2V4B A;  3CKI A;  2FV5 A;  1CAQ A;  3WV3 A;  3AYU A;  1PWP A;  4H76 A;  2JT6 A;  2O3E A;  1OM7 A;  4FU4 A;  4PKQ A;  2JT5 A;  3EHY A;  1KAP P;  4A3W A;  4WK7 A;  2WO8 A;  3AIG A;  1XFW A;  1K7I A;  1R1J A;  2OXW A;  3LEA A;  3DPF A;  3DPE A;  1BSW A;  1G05 A;  2OZR A;  1OZ9 A;  3F19 A;  1SAT A;  1BQO A;  5BOT A;  2W12 A;  2J0T A;  2OW1 A;  2DDY A;  3NX7 A;  1ND1 A;  1USN A;  3LIK A;  1OMJ A;  4IN9 A;  1CGF A;  4L63 A;  3B8Z A;  2MZE A;  3F16 A;  2USN A;  1GKC A;  2E2D A;  1SLN A;  1TVI A;  1K7Q A;  2OW9 A;  2A8H A;  5H8X A;  1MNC A;  4GQL A;  1JK3 A;  4WF6 A;  1R55 A;  1PWW A;  3LMC A;  1MMB A;  3VI1 A;  2CLT A;  2TCL A;  4PKU A;  1QIA A;  1S4B P;  1GO7 P;  3E8R A;  966C A;  1KUG A;  2N8R A;  3F1A A;  1XAX A;  1BKC A;  2XS3 A;  4H49 A;  1H71 P;  2W13 A;  3DWB A;  3U1R A;  1I76 A;  1O0Q A;  3LJZ A;  3ZUK A;  5L7F A;  5JMY A;  2OY2 A;  1ZP5 A;  4R3V A;  3LQB A;  4FXQ A;  2OW2 A;  3Q2G A;  1B3D A;  5D1U A;  2D1N A;  5I3M A;  3F15 A;  4I03 A;  4AXQ A;  2XS4 A;  3HY7 A;  1PWU A;  4H84 A;  1ZXC A;  3HBU P;  3EWJ A;  1CIZ A;  1BQQ M;  1RMZ A;  2X3C A;  4DV8 A;  3BA0 A;  1JAN A;  1UMS A;  2YIG A;  3LIR A;  4ZR5 A;  2KRJ A;  3TVC A;  1ROS A;  3RTT A;  2W0D A;  4JP4 A;  1GXD A;  4PKV A;  5I12 A;  4GWN A;  3DTK A;  4JA1 A;  1YQY A;  3HB2 P;  3KHI A;  4H1Q A;  4GUY A;  4XM8 A;  4H82 A;  1IAC A;  2OY4 A;  1QUA A;  4JIJ A;  1XUR A;  1ZXV A;  2ERQ A;  1Y8J A;  2DDF A;  3EDH A;  1B8Y A;  4XCT A;  5B5P A;  1HOV A;  2WO9 A;  2OVX A;  1GKD A;  3TT4 A;  3ZXH A;  4L7A A;  1JIZ A;  4L6T A;  4ON1 A;  3P24 A;  4G9L A;  2FV9 A;  5I43 A;  2YUF A;  4XM7 A;  2OVZ A;  1G9K A;  3KEC A;  3K7N A;  1EAK A;  2WOA A;  3I7G A;  1OM6 A;  3VTG A;  2DW0 A;  4QKZ A;  3K7L A;  1UEA A;  3LGP A;  3KWV C;  1C7K A;  1Z3J A;  1CGL A;  2AIG P;  1JH1 A;  3LJG A;  4DD8 A;  1JAP A;  2MZH A;  1JKY A;  1AST A;  1C3I A;  5LAB A;  3F18 A;  4PKW A;  1MMP A;  1IAA A;  1ATL A;  3O64 A;  4HX3 A;  5CUH A;  2PJT A;  1G49 A;  1JIW P;  1KUF A;  4AIG A;  3G5C A;  3O2X A;  3UVC A;  4IUW A;  1QJI A;  4DPE A;  1GE6 A;  4AYK A;  3RTS A;  5D3C A;  3EHX A;  3KEK A;  3DSL A;  5D1S A;  2JSD A;  1BZS A;  1JJ9 A;  3KME A;  1IAG A;  3USN A;  1L6J A;  3DNG A;  2ERP A;  3N2U A;  1KBC A;  1Y0V A;  2YB9 A;  3WV1 A;  3HYG A;  2QPJ A;  1YP1 A;  4XM6 A;  2J83 A;  1BKC E;  1AYK A;  3Q2H A;  2DW2 A;  5B5O A;  4GWM A;  5D2B A;  3HDB A;  1CGE A;  1DTH A;  4ILW D;  1XFV A;  4IJO A;  1I73 A;  1R1I A;  1JAO A;  3LIL A;  1IAB A;  1HV5 A;  2X7M A;  1HY7 A;  2W15 A;  3LJT A;  1I1I P;  1OO9 A;  3F17 A;  3TSK A;  1G12 A;  1YCM A;  3P1V A;  4AUO A;  2W14 A;  1D5J A;  3OHO A;  1BKC I;  1PWV A;  1BUV M;  1OS2 A;  1CXV A;  2JNP A;  3DTE A;  1FLS A;  1Y93 A;  5BPA A;  3L0V A;  4A7B A;  2K2G A;  1JAQ A;  1EB6 A;  1XFU A;  1QIB A;  4WKI A;  1RM8 A;  1XFX A;  5CZM A;  3WV2 A;  1SRP A;  4PKR A;  4GR3 A;  1XUC A;  1D7X A;  1KUH A;  4WKE A;  1HFC A;  3DTI A;  4JPA A;  1YOU A;  4GF1 A;  5CXA A;  4JQG A;  1Q3A A;  3LUM A;  2E3X A;  1XFZ A;  3ELM A;  1R54 A;  2Y6C A;  5I2Z A;  1SMP A;  3KEJ A;  3I7I A;  3EDI A;  1XFY A;  1UMT A;  1WNI A;  4FXY P;  3LQ0 A;  5I4O A;  3LE9 A; 
#chains in the Genus database with same CATH homology
 2YPT A;  1XM5 A;  3CQB A;  1XAX A;  4JIU A;  4IL3 A;  1TVI A;  4JIX A;  1OZ9 A;  4AW6 A;  4QHF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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