1XKHA

Pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa pao1 bound to pyoverdine
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
687
structure length
687
Chain Sequence
ATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Ferripyoverdine receptor
publication title The Crystal Structure of the Pyoverdine Outer Membrane Receptor FpvA from Pseudomonas aeruginosa at 3.6A Resolution
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 129
structure length 687
sequence length 687
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 1xkhA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 1xkhA01
1FEPA 2GUFA 3M8DA 1QFFA 3V8XA 3M8BA 2FCPA 2W16A 1BY3A 1QFGA 4AIQA 2W76A 3EFMA 1PO3A 1NQGA 1PNZA 3RGMA 3FHHA 1FI1A 3CSNA 1UJWA 2O5PA 2HDFA 3V89A 1NQEA 5FOKA 4CU4A 2W78A 2W6UA 1KMOA 2IAHA 1BY5A 1QKCA 1XKHA 1KMPA 1NQFA 1XKWA 1PO0A 1NQHA 3CSLA 3RGNA 4AIPA 2W77A 2HDIA 1FCPA 2YSUA 4RDTA 2GSKA 3QLBA 2W6TA 2GRXA 2W75A 4EPAA 1QJQA 4RDRA 3DDRA 4B7OA
chains in the Genus database with same CATH superfamily
1FEPA 1A0TP 2GUFA 3M8DA 1MPQA 1QFFA 3V8XA 3DDRA 3M8BA 2FCPA 2W16A 1BY3A 1QFGA 4AIQA 2W76A 3EFMA 1PO3A 1NQGA 1MALA 3RGMA 1PNZA 3FHHA 1FI1A 1MPRA 3CSNA 1UJWA 2O5PA 2HDFA 4RDRA 3V89A 1NQEA 5FOKA 4CU4A 2W78A 1MPMA 1MPOA 2W6UA 2IAHA 1BY5A 1MPNA 1QKCA 1KMOA 1XKHA 1KMPA 1NQFA 1XKWA 1PO0A 1NQHA 3CSLA 3RGNA 4AIPA 2W77A 2HDIA 1FCPA 2YSUA 1AF6A 1OH2P 4RDTA 2GSKA 1OH2Q 3QLBA 2W6TA 1JBIA 2GRXA 2W75A 4EPAA 1QJQA 2MPRA 1A0SP 4B7OA
chains in the Genus database with same CATH topology
1FEPA 2GUFA 3M8DA 1QFFA 3V8XA 3M8BA 2FCPA 2W16A 1BY3A 1QFGA 4AIQA 2W76A 3EFMA 1PO3A 1NQGA 1PNZA 3RGMA 3FHHA 1FI1A 3CSNA 1UJWA 2O5PA 2HDFA 3V89A 1NQEA 5FOKA 4CU4A 2W78A 2W6UA 1KMOA 2IAHA 1BY5A 1QKCA 1XKHA 1KMPA 1NQFA 1XKWA 1PO0A 1NQHA 3CSLA 3RGNA 4AIPA 2W77A 2HDIA 1FCPA 2YSUA 4RDTA 2GSKA 3QLBA 2W6TA 2GRXA 2W75A 4EPAA 1QJQA 4RDRA 3DDRA 4B7OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FEP A;  2GUF A;  3M8D A;  1QFF A;  3V8X A;  3M8B A;  2FCP A;  2W16 A;  1BY3 A;  1QFG A;  4AIQ A;  2W76 A;  3EFM A;  1PO3 A;  1NQG A;  1PNZ A;  3RGM A;  3FHH A;  1FI1 A;  3CSN A;  1UJW A;  2O5P A;  2HDF A;  3V89 A;  1NQE A;  5FOK A;  4CU4 A;  2W78 A;  2W6U A;  1KMO A;  2IAH A;  1BY5 A;  1QKC A;  1XKH A;  1KMP A;  1NQF A;  1XKW A;  1PO0 A;  1NQH A;  3CSL A;  3RGN A;  4AIP A;  2W77 A;  2HDI A;  1FCP A;  2YSU A;  4RDT A;  2GSK A;  3QLB A;  2W6T A;  2GRX A;  2W75 A;  4EPA A;  1QJQ A;  4RDR A;  3DDR A;  4B7O A; 
#chains in the Genus database with same CATH topology
 1FEP A;  1A0T P;  2GUF A;  3M8D A;  1MPQ A;  1QFF A;  3V8X A;  3DDR A;  3M8B A;  2FCP A;  2W16 A;  1BY3 A;  1QFG A;  4AIQ A;  2W76 A;  3EFM A;  1PO3 A;  1NQG A;  1MAL A;  3RGM A;  1PNZ A;  3FHH A;  1FI1 A;  1MPR A;  3CSN A;  1UJW A;  2O5P A;  2HDF A;  4RDR A;  3V89 A;  1NQE A;  5FOK A;  4CU4 A;  2W78 A;  1MPM A;  1MPO A;  2W6U A;  2IAH A;  1BY5 A;  1MPN A;  1QKC A;  1KMO A;  1XKH A;  1KMP A;  1NQF A;  1XKW A;  1PO0 A;  1NQH A;  3CSL A;  3RGN A;  4AIP A;  2W77 A;  2HDI A;  1FCP A;  2YSU A;  1AF6 A;  1OH2 P;  4RDT A;  2GSK A;  1OH2 Q;  3QLB A;  2W6T A;  1JBI A;  2GRX A;  2W75 A;  4EPA A;  1QJQ A;  2MPR A;  1A0S P;  4B7O A; 
#chains in the Genus database with same CATH homology
 1FEP A;  2GUF A;  3M8D A;  1QFF A;  3V8X A;  3M8B A;  2FCP A;  2W16 A;  1BY3 A;  1QFG A;  4AIQ A;  2W76 A;  3EFM A;  1PO3 A;  1NQG A;  1PNZ A;  3RGM A;  3FHH A;  1FI1 A;  3CSN A;  1UJW A;  2O5P A;  2HDF A;  3V89 A;  1NQE A;  5FOK A;  4CU4 A;  2W78 A;  2W6U A;  1KMO A;  2IAH A;  1BY5 A;  1QKC A;  1XKH A;  1KMP A;  1NQF A;  1XKW A;  1PO0 A;  1NQH A;  3CSL A;  3RGN A;  4AIP A;  2W77 A;  2HDI A;  1FCP A;  2YSU A;  4RDT A;  2GSK A;  3QLB A;  2W6T A;  2GRX A;  2W75 A;  4EPA A;  1QJQ A;  4RDR A;  3DDR A;  4B7O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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