1XL8A

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine
Total Genus 205
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
602
structure length
591
Chain Sequence
b'ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 205
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl8A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl8A03
3U9BA 1CIAA 1EAEA 1EAAA 1EADA 4KECA 4N72A 4JN3A 1DPDA 1NOCB 1CLAA 2RKVA 2E1VA 5DU9A 5KJVA 1XL7A 2ZBAA 3L60A 1DPCA 2VSQA 3MAEA 4G2MA 1QCAA 1E2OA 5FALA 2XHGA 3FOTA 1EACA 4KE4A 5KJSA 3FP0A 1Q23A 2E1UA 3U9FA 5KJUA 2JGPA 3B2SA 2II3A 2I9DA 5T3EA 1PD5A 1XL8A 1XMDA 3B30A 4HVMA 2II5A 1L5AA 2BGHA 1DPBA 2RKTA 3CLAA 1SCZA 5FANA 5KJWA 1C4TA 4CLAA 2IHWA 1Q9JA 5DUAA 2II4A 4G22A 1EABA 2XR7A 2CLAA 4JN5A 4G0BA 1XMCA 1EAFA 2E1TA 5KJTA
chains in the Genus database with same CATH superfamily
1NDIA 1KQ7A 1NDBA 3RRPA 1EADA 2FUSA 2O7DA 1NOCB 5KJVA 1XL7A 3OCEA 5F91A 1DPCA 2PTSA 4G2MA 1DOFA 5HW2A 1T6JA 2XHGA 1I0AA 2FW3A 2FY5A 2NYFA 2RJRA 3CRW1 3B2SA 4EEIA 2DEBA 4FFXA 3B30A 1XL8A 1JSWA 2OHYA 1C3UA 1C3CA 2II5A 4EPHA 1B8FA 2O6YA 2QGAB 4C5UA 3GTDA 3KDZA 2IHWA 1T6PA 2PFMA 2H3WA 1K62A 4V2QA 2E9FA 4V2RA 1TJWA 1YFMA 2CLAA 1XMCA 2QVEA 1Q5NA 4N72A 5KJTA 1T7NA 1Q6XA 1AUWA 1RE5A 3R6VA 2VD6A 4KECA 5EYTA 4ADMA 1DCNA 2O7FA 2E1VA 1GKMA 5DU9A 5EYVA 2VSQA 4C5SA 3MAEA 1TJUA 1E2OA 1GKJA 3FOTA 5KJSA 1U16A 1Q23A 5KJUA 3UNVA 1XWOA 2JGPA 2RCUA 2I9DA 1PD5A 1XMDA 2FYOA 3KDYA 1T7OA 4C5RA 2BGHA 1DPBA 3CLAA 3GZHA 2NYNA 2II4A 4ADLA 1U15A 3RD8A 1EABA 2PTRA 4G22A 4JN5A 5D6BA 4G0BA 2O78A 1FUPA 5FANA 2X75A 1CIAA 1EAAA 4JN3A 1CLAA 1J3UA 2O7BA 2H3PA 2ZBAA 3L60A 2RJSA 5FALA 4APAA 3NZ4A 3R6QA 1FUQA 4NLEA 3U9FA 2VL7A 1NDFA 2E1UA 2O7EA 2E1TA 1T7QA 2II3A 4EYWA 4EFCA 2FY2A 4BAAA 3R6YA 2PTQA 3C8TA 3E04A 1HY0A 2RKTA 1SCZA 1T1UA 1C4TA 1Y2MA 4CLAA 5DUAA 1S5OA 1NM8A 4C6GA 4APBA 5F92A 2VSFA 2XR7A 3OCFA 1EAFA 1Q9JA 1FUOA 3U9BA 1GK3A 3BHGA 2FY4A 1EAEA 2YIIA 1HY1A 1FURA 1DPDA 2RKVA 2HVGA 1TJVA 4CQ5A 3TV2A 1QCAA 3CZOA 4EP9A 1EACA 3CRVA 4KE4A 3FP0A 3QBPA 1VDKA 1EB4A 1GK2A 2H4TA 5T3EA 2FY3A 4HVMA 4A15A 1L5AA 2J91A 4BABA 5H8WA 5KJWA 4NSLA 1YFEA 2H3UA 1K7WA 4FLCA 3NO9A 4MX2A 1YISA 4HGVA 1W27A 1TJ7A
chains in the Genus database with same CATH topology
1EADA 1NOCB 5KJVA 1XL7A 4G2MA 1DPCA 2XHGA 3CRW1 3B2SA 3B30A 1XL8A 2II5A 2IHWA 2E9FA 2CLAA 1XMCA 4N72A 5KJTA 4KECA 2E1VA 5DU9A 2VSQA 3MAEA 1E2OA 3FOTA 5KJSA 1Q23A 5KJUA 2JGPA 2I9DA 1PD5A 1XMDA 2BGHA 1DPBA 3CLAA 2II4A 4G22A 1EABA 4JN5A 4G0BA 5FANA 1CIAA 1EAAA 4JN3A 1CLAA 2ZBAA 3L60A 5FALA 4NLEA 3U9FA 2VL7A 2E1UA 2II3A 2RKTA 1SCZA 1C4TA 4CLAA 5DUAA 2XR7A 2VSFA 1EAFA 1Q9JA 3U9BA 1EAEA 1DPDA 2RKVA 1QCAA 1EACA 3CRVA 4KE4A 3FP0A 5T3EA 4HVMA 4A15A 1L5AA 5H8WA 5KJWA 2E1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U9B A;  1CIA A;  1EAE A;  1EAA A;  1EAD A;  4KEC A;  4N72 A;  4JN3 A;  1DPD A;  1NOC B;  1CLA A;  2RKV A;  2E1V A;  5DU9 A;  5KJV A;  1XL7 A;  2ZBA A;  3L60 A;  1DPC A;  2VSQ A;  3MAE A;  4G2M A;  1QCA A;  1E2O A;  5FAL A;  2XHG A;  3FOT A;  1EAC A;  4KE4 A;  5KJS A;  3FP0 A;  1Q23 A;  2E1U A;  3U9F A;  5KJU A;  2JGP A;  3B2S A;  2II3 A;  2I9D A;  5T3E A;  1PD5 A;  1XL8 A;  1XMD A;  3B30 A;  4HVM A;  2II5 A;  1L5A A;  2BGH A;  1DPB A;  2RKT A;  3CLA A;  1SCZ A;  5FAN A;  5KJW A;  1C4T A;  4CLA A;  2IHW A;  1Q9J A;  5DUA A;  2II4 A;  4G22 A;  1EAB A;  2XR7 A;  2CLA A;  4JN5 A;  4G0B A;  1XMC A;  1EAF A;  2E1T A;  5KJT A; 
#chains in the Genus database with same CATH topology
 1NDI A;  1KQ7 A;  1NDB A;  3RRP A;  1EAD A;  2FUS A;  2O7D A;  1NOC B;  5KJV A;  1XL7 A;  3OCE A;  5F91 A;  1DPC A;  2PTS A;  4G2M A;  1DOF A;  5HW2 A;  1T6J A;  2XHG A;  1I0A A;  2FW3 A;  2FY5 A;  2NYF A;  2RJR A;  3CRW 1;  3B2S A;  4EEI A;  2DEB A;  4FFX A;  3B30 A;  1XL8 A;  1JSW A;  2OHY A;  1C3U A;  1C3C A;  2II5 A;  4EPH A;  1B8F A;  2O6Y A;  2QGA B;  4C5U A;  3GTD A;  3KDZ A;  2IHW A;  1T6P A;  2PFM A;  2H3W A;  1K62 A;  4V2Q A;  2E9F A;  4V2R A;  1TJW A;  1YFM A;  2CLA A;  1XMC A;  2QVE A;  1Q5N A;  4N72 A;  5KJT A;  1T7N A;  1Q6X A;  1AUW A;  1RE5 A;  3R6V A;  2VD6 A;  4KEC A;  5EYT A;  4ADM A;  1DCN A;  2O7F A;  2E1V A;  1GKM A;  5DU9 A;  5EYV A;  2VSQ A;  4C5S A;  3MAE A;  1TJU A;  1E2O A;  1GKJ A;  3FOT A;  5KJS A;  1U16 A;  1Q23 A;  5KJU A;  3UNV A;  1XWO A;  2JGP A;  2RCU A;  2I9D A;  1PD5 A;  1XMD A;  2FYO A;  3KDY A;  1T7O A;  4C5R A;  2BGH A;  1DPB A;  3CLA A;  3GZH A;  2NYN A;  2II4 A;  4ADL A;  1U15 A;  3RD8 A;  1EAB A;  2PTR A;  4G22 A;  4JN5 A;  5D6B A;  4G0B A;  2O78 A;  1FUP A;  5FAN A;  2X75 A;  1CIA A;  1EAA A;  4JN3 A;  1CLA A;  1J3U A;  2O7B A;  2H3P A;  2ZBA A;  3L60 A;  2RJS A;  5FAL A;  4APA A;  3NZ4 A;  3R6Q A;  1FUQ A;  4NLE A;  3U9F A;  2VL7 A;  1NDF A;  2E1U A;  2O7E A;  2E1T A;  1T7Q A;  2II3 A;  4EYW A;  4EFC A;  2FY2 A;  4BAA A;  3R6Y A;  2PTQ A;  3C8T A;  3E04 A;  1HY0 A;  2RKT A;  1SCZ A;  1T1U A;  1C4T A;  1Y2M A;  4CLA A;  5DUA A;  1S5O A;  1NM8 A;  4C6G A;  4APB A;  5F92 A;  2VSF A;  2XR7 A;  3OCF A;  1EAF A;  1Q9J A;  1FUO A;  3U9B A;  1GK3 A;  3BHG A;  2FY4 A;  1EAE A;  2YII A;  1HY1 A;  1FUR A;  1DPD A;  2RKV A;  2HVG A;  1TJV A;  4CQ5 A;  3TV2 A;  1QCA A;  3CZO A;  4EP9 A;  1EAC A;  3CRV A;  4KE4 A;  3FP0 A;  3QBP A;  1VDK A;  1EB4 A;  1GK2 A;  2H4T A;  5T3E A;  2FY3 A;  4HVM A;  4A15 A;  1L5A A;  2J91 A;  4BAB A;  5H8W A;  5KJW A;  4NSL A;  1YFE A;  2H3U A;  1K7W A;  4FLC A;  3NO9 A;  4MX2 A;  1YIS A;  4HGV A;  1W27 A;  1TJ7 A; 
#chains in the Genus database with same CATH homology
 1EAD A;  1NOC B;  5KJV A;  1XL7 A;  4G2M A;  1DPC A;  2XHG A;  3CRW 1;  3B2S A;  3B30 A;  1XL8 A;  2II5 A;  2IHW A;  2E9F A;  2CLA A;  1XMC A;  4N72 A;  5KJT A;  4KEC A;  2E1V A;  5DU9 A;  2VSQ A;  3MAE A;  1E2O A;  3FOT A;  5KJS A;  1Q23 A;  5KJU A;  2JGP A;  2I9D A;  1PD5 A;  1XMD A;  2BGH A;  1DPB A;  3CLA A;  2II4 A;  4G22 A;  1EAB A;  4JN5 A;  4G0B A;  5FAN A;  1CIA A;  1EAA A;  4JN3 A;  1CLA A;  2ZBA A;  3L60 A;  5FAL A;  4NLE A;  3U9F A;  2VL7 A;  2E1U A;  2II3 A;  2RKT A;  1SCZ A;  1C4T A;  4CLA A;  5DUA A;  2XR7 A;  2VSF A;  1EAF A;  1Q9J A;  3U9B A;  1EAE A;  1DPD A;  2RKV A;  1QCA A;  1EAC A;  3CRV A;  4KE4 A;  3FP0 A;  5T3E A;  4HVM A;  4A15 A;  1L5A A;  5H8W A;  5KJW A;  2E1T A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...