1XL8A

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
total genus 205
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl8A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl8A03
2E1VA 5FALA 2IHWA 5KJUA 1EABA 1L5AA 5FANA 3U9BA 3FP0A 4N72A 1Q9JA 1EACA 1Q23A 2E1TA 1XL8A 4G2MA 1EAAA 3MAEA 3FOTA 1DPDA 2I9DA 5KJVA 2VSQA 1XL7A 1DPBA 2II3A 3U9FA 2XHGA 1XMDA 1CIAA 5T3EA 5KJWA 5KJTA 1QCAA 1CLAA 1C4TA 1SCZA 2RKVA 2ZBAA 3B2SA 1EAFA 3CLAA 4JN3A 5KJSA 5DU9A 2XR7A 1E2OA 4KE4A 2II4A 4G22A 5DUAA 4JN5A 2CLAA 4KECA 1DPCA 1XMCA 4CLAA 2JGPA 2E1UA 1PD5A 3B30A 4G0BA 2BGHA 1EADA 2RKTA 3L60A 1EAEA 2II5A 4HVMA 1NOCB
chains in the Genus database with same CATH superfamily
1T1UA 2YIIA 3R6VA 1DOFA 4EP9A 1EABA 1L5AA 1XWOA 2FY4A 3QBPA 2FY3A 2PTQA 1W27A 1EAAA 5D6BA 3RRPA 4NLEA 1FUQA 1KQ7A 2XHGA 5T3EA 1CLAA 1NDIA 1T7OA 1EAFA 1FURA 2XR7A 1DCNA 1E2OA 4KE4A 1T7NA 2II4A 4C5SA 4G22A 2CLAA 1FUOA 1Q6XA 4JN5A 1XMCA 4CLAA 1FUPA 1J3UA 2E1UA 4BAAA 1AUWA 4C5UA 3B30A 4ADLA 4G0BA 1TJVA 3OCEA 4HVMA 3KDYA 4BABA 2RJRA 5FALA 2HVGA 2IHWA 2NYFA 2NYNA 1K62A 4HGVA 4G2MA 2E1TA 3TV2A 3CRVA 4EFCA 1S5OA 2H3UA 2J91A 1Y2MA 1GK3A 1CIAA 5KJTA 3CRW1 1TJWA 1SCZA 4JN3A 1T6PA 2RCUA 4FLCA 1JSWA 1U15A 4APBA 1PD5A 1C3CA 3R6QA 3L60A 4APAA 1K7WA 5EYTA 1EAEA 2PTRA 2VL7A 2OHYA 1GKMA 1NOCB 4ADMA 2X75A 1NM8A 2E1VA 1U16A 5KJUA 2PFMA 2O6YA 3E04A 2FY2A 3FP0A 2PTSA 4N72A 3OCFA 3KDZA 4EPHA 3MAEA 3FOTA 1DPDA 5KJVA 3NZ4A 1RE5A 4V2QA 1YFMA 3NO9A 3U9FA 1GK2A 2E9FA 1QCAA 2ZBAA 3B2SA 2RKVA 1B8FA 5KJSA 5DU9A 1GKJA 3BHGA 4KECA 5F91A 2JGPA 1YFEA 4NSLA 4CQ5A 1I0AA 4C6GA 2BGHA 1NDFA 2II5A 2O7EA 3R6YA 3UNVA 1T7QA 5FANA 4FFXA 2O7FA 2FUSA 1EB4A 1VDKA 3RD8A 1HY0A 2FY5A 1Q5NA 2H4TA 3U9BA 1Q9JA 1EACA 1Q23A 2FW3A 1XL8A 2QGAB 2I9DA 2VSQA 2O7DA 4EEIA 1XL7A 1DPBA 2II3A 2DEBA 1XMDA 5KJWA 2RJSA 2VD6A 1HY1A 1TJUA 3GZHA 5H8WA 1C4TA 3CLAA 3C8TA 2QVEA 1TJ7A 4A15A 1NDBA 5HW2A 5DUAA 1DPCA 4C5RA 4EYWA 3CZOA 4V2RA 2H3PA 5EYVA 1C3UA 2RKTA 1EADA 2O7BA 2H3WA 4MX2A 1T6JA 5F92A 1YISA 2VSFA 2O78A 3GTDA 2FYOA
chains in the Genus database with same CATH topology
1EABA 1L5AA 1EAAA 4NLEA 2XHGA 5T3EA 1CLAA 1EAFA 2XR7A 1E2OA 4KE4A 2II4A 4G22A 4JN5A 2CLAA 1XMCA 4CLAA 2E1UA 3B30A 4G0BA 4HVMA 5FALA 2IHWA 4G2MA 2E1TA 3CRVA 5KJTA 1CIAA 3CRW1 4JN3A 1SCZA 1PD5A 3L60A 1EAEA 2VL7A 1NOCB 2E1VA 5KJUA 3FP0A 4N72A 3MAEA 3FOTA 1DPDA 5KJVA 3U9FA 2E9FA 1QCAA 2ZBAA 3B2SA 2RKVA 5KJSA 5DU9A 4KECA 2JGPA 2BGHA 2II5A 5FANA 3U9BA 1Q9JA 1EACA 1Q23A 1XL8A 2I9DA 2VSQA 1XL7A 1DPBA 2II3A 1XMDA 5KJWA 3CLAA 5H8WA 1C4TA 4A15A 5DUAA 1DPCA 2RKTA 1EADA 2VSFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1V A;  5FAL A;  2IHW A;  5KJU A;  1EAB A;  1L5A A;  5FAN A;  3U9B A;  3FP0 A;  4N72 A;  1Q9J A;  1EAC A;  1Q23 A;  2E1T A;  1XL8 A;  4G2M A;  1EAA A;  3MAE A;  3FOT A;  1DPD A;  2I9D A;  5KJV A;  2VSQ A;  1XL7 A;  1DPB A;  2II3 A;  3U9F A;  2XHG A;  1XMD A;  1CIA A;  5T3E A;  5KJW A;  5KJT A;  1QCA A;  1CLA A;  1C4T A;  1SCZ A;  2RKV A;  2ZBA A;  3B2S A;  1EAF A;  3CLA A;  4JN3 A;  5KJS A;  5DU9 A;  2XR7 A;  1E2O A;  4KE4 A;  2II4 A;  4G22 A;  5DUA A;  4JN5 A;  2CLA A;  4KEC A;  1DPC A;  1XMC A;  4CLA A;  2JGP A;  2E1U A;  1PD5 A;  3B30 A;  4G0B A;  2BGH A;  1EAD A;  2RKT A;  3L60 A;  1EAE A;  2II5 A;  4HVM A;  1NOC B; 
#chains in the Genus database with same CATH topology
 1T1U A;  2YII A;  3R6V A;  1DOF A;  4EP9 A;  1EAB A;  1L5A A;  1XWO A;  2FY4 A;  3QBP A;  2FY3 A;  2PTQ A;  1W27 A;  1EAA A;  5D6B A;  3RRP A;  4NLE A;  1FUQ A;  1KQ7 A;  2XHG A;  5T3E A;  1CLA A;  1NDI A;  1T7O A;  1EAF A;  1FUR A;  2XR7 A;  1DCN A;  1E2O A;  4KE4 A;  1T7N A;  2II4 A;  4C5S A;  4G22 A;  2CLA A;  1FUO A;  1Q6X A;  4JN5 A;  1XMC A;  4CLA A;  1FUP A;  1J3U A;  2E1U A;  4BAA A;  1AUW A;  4C5U A;  3B30 A;  4ADL A;  4G0B A;  1TJV A;  3OCE A;  4HVM A;  3KDY A;  4BAB A;  2RJR A;  5FAL A;  2HVG A;  2IHW A;  2NYF A;  2NYN A;  1K62 A;  4HGV A;  4G2M A;  2E1T A;  3TV2 A;  3CRV A;  4EFC A;  1S5O A;  2H3U A;  2J91 A;  1Y2M A;  1GK3 A;  1CIA A;  5KJT A;  3CRW 1;  1TJW A;  1SCZ A;  4JN3 A;  1T6P A;  2RCU A;  4FLC A;  1JSW A;  1U15 A;  4APB A;  1PD5 A;  1C3C A;  3R6Q A;  3L60 A;  4APA A;  1K7W A;  5EYT A;  1EAE A;  2PTR A;  2VL7 A;  2OHY A;  1GKM A;  1NOC B;  4ADM A;  2X75 A;  1NM8 A;  2E1V A;  1U16 A;  5KJU A;  2PFM A;  2O6Y A;  3E04 A;  2FY2 A;  3FP0 A;  2PTS A;  4N72 A;  3OCF A;  3KDZ A;  4EPH A;  3MAE A;  3FOT A;  1DPD A;  5KJV A;  3NZ4 A;  1RE5 A;  4V2Q A;  1YFM A;  3NO9 A;  3U9F A;  1GK2 A;  2E9F A;  1QCA A;  2ZBA A;  3B2S A;  2RKV A;  1B8F A;  5KJS A;  5DU9 A;  1GKJ A;  3BHG A;  4KEC A;  5F91 A;  2JGP A;  1YFE A;  4NSL A;  4CQ5 A;  1I0A A;  4C6G A;  2BGH A;  1NDF A;  2II5 A;  2O7E A;  3R6Y A;  3UNV A;  1T7Q A;  5FAN A;  4FFX A;  2O7F A;  2FUS A;  1EB4 A;  1VDK A;  3RD8 A;  1HY0 A;  2FY5 A;  1Q5N A;  2H4T A;  3U9B A;  1Q9J A;  1EAC A;  1Q23 A;  2FW3 A;  1XL8 A;  2QGA B;  2I9D A;  2VSQ A;  2O7D A;  4EEI A;  1XL7 A;  1DPB A;  2II3 A;  2DEB A;  1XMD A;  5KJW A;  2RJS A;  2VD6 A;  1HY1 A;  1TJU A;  3GZH A;  5H8W A;  1C4T A;  3CLA A;  3C8T A;  2QVE A;  1TJ7 A;  4A15 A;  1NDB A;  5HW2 A;  5DUA A;  1DPC A;  4C5R A;  4EYW A;  3CZO A;  4V2R A;  2H3P A;  5EYV A;  1C3U A;  2RKT A;  1EAD A;  2O7B A;  2H3W A;  4MX2 A;  1T6J A;  5F92 A;  1YIS A;  2VSF A;  2O78 A;  3GTD A;  2FYO A; 
#chains in the Genus database with same CATH homology
 1EAB A;  1L5A A;  1EAA A;  4NLE A;  2XHG A;  5T3E A;  1CLA A;  1EAF A;  2XR7 A;  1E2O A;  4KE4 A;  2II4 A;  4G22 A;  4JN5 A;  2CLA A;  1XMC A;  4CLA A;  2E1U A;  3B30 A;  4G0B A;  4HVM A;  5FAL A;  2IHW A;  4G2M A;  2E1T A;  3CRV A;  5KJT A;  1CIA A;  3CRW 1;  4JN3 A;  1SCZ A;  1PD5 A;  3L60 A;  1EAE A;  2VL7 A;  1NOC B;  2E1V A;  5KJU A;  3FP0 A;  4N72 A;  3MAE A;  3FOT A;  1DPD A;  5KJV A;  3U9F A;  2E9F A;  1QCA A;  2ZBA A;  3B2S A;  2RKV A;  5KJS A;  5DU9 A;  4KEC A;  2JGP A;  2BGH A;  2II5 A;  5FAN A;  3U9B A;  1Q9J A;  1EAC A;  1Q23 A;  1XL8 A;  2I9D A;  2VSQ A;  1XL7 A;  1DPB A;  2II3 A;  1XMD A;  5KJW A;  3CLA A;  5H8W A;  1C4T A;  4A15 A;  5DUA A;  1DPC A;  2RKT A;  1EAD A;  2VSF A; 
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