1XL8A

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine
Total Genus 205
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 205
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl8A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl8A03
1EAEA 2E1VA 4CLAA 1Q23A 2BGHA 2II5A 1EACA 1CLAA 2RKTA 4G0BA 2VSQA 2II3A 1NOCB 1DPBA 2E1UA 3MAEA 5KJWA 2JGPA 5DU9A 4N72A 5KJTA 3U9BA 1QCAA 3CLAA 2II4A 1XMCA 4HVMA 2XHGA 4KE4A 1EAFA 4KECA 5DUAA 1XMDA 1C4TA 2E1TA 1Q9JA 5FANA 1XL8A 1XL7A 4JN5A 3U9FA 2CLAA 5KJVA 1DPDA 3L60A 5KJSA 1L5AA 2XR7A 3B30A 1EAAA 4JN3A 1DPCA 1SCZA 2I9DA 3FP0A 1E2OA 2ZBAA 1EADA 3FOTA 5T3EA 5FALA 5KJUA 4G22A 1EABA 1PD5A 4G2MA 1CIAA 2RKVA 3B2SA 2IHWA
chains in the Genus database with same CATH superfamily
2O7BA 1T6PA 2O7EA 1NDFA 4C5SA 2VSQA 3MAEA 2RJRA 4C5UA 4V2RA 1TJVA 1GKMA 1EAFA 5DUAA 1XWOA 2E1TA 1Q9JA 2H3UA 1U16A 1S5OA 3R6VA 3QBPA 4JN5A 3OCFA 1I0AA 3L60A 2PTQA 1NM8A 1TJWA 1FURA 2XR7A 4JN3A 1TJUA 1DPCA 1RE5A 2VD6A 2FW3A 2PTSA 3FP0A 2E9FA 1NDBA 2NYNA 2YIIA 1EABA 5KJSA 1VDKA 1T7OA 4ADMA 1J3UA 5EYTA 1EAEA 3C8TA 2E1VA 4EEIA 2PTRA 5EYVA 4A15A 1Q23A 1CLAA 2BGHA 4G0BA 4EP9A 1NOCB 1DPBA 4N72A 5KJTA 3CZOA 1QCAA 1U15A 4EYWA 4NSLA 2X75A 4HVMA 5HW2A 2FY2A 4HGVA 1C4TA 4APBA 5F92A 4MX2A 4FFXA 1YFEA 3U9FA 2O7FA 2O7DA 2FYOA 2HVGA 1Q5NA 3GZHA 4EFCA 3B30A 4EPHA 5F91A 1C3CA 1TJ7A 3FOTA 5FALA 2RJSA 4G2MA 3RRPA 2H3PA 2RKVA 1KQ7A 4CLAA 3GTDA 3RD8A 3R6YA 4CQ5A 1DOFA 2II3A 2FUSA 4C5RA 2RCUA 5DU9A 2O78A 3U9BA 3KDYA 4ADLA 3OCEA 1HY1A 1YISA 2II4A 3CLAA 2PFMA 2XHGA 4NLEA 2O6YA 4KE4A 5FANA 1T7QA 3BHGA 3CRVA 1Y2MA 3NO9A 2H3WA 4FLCA 2CLAA 1DPDA 4BABA 1EAAA 5D6BA 1SCZA 1HY0A 2ZBAA 5KJUA 5H8WA 2VSFA 4G22A 4V2QA 1PD5A 1T1UA 1CIAA 2RKTA 3B2SA 2IHWA 4APAA 2DEBA 1FUPA 2NYFA 2H4TA 1GK2A 1EACA 2II5A 5KJWA 2E1UA 3E04A 2JGPA 2QVEA 3TV2A 2OHYA 3R6QA 3CRW1 1XMCA 1EB4A 1FUOA 1W27A 1K62A 4KECA 1GK3A 1XMDA 1B8FA 1GKJA 1XL8A 1YFMA 2J91A 1XL7A 4C6GA 2FY3A 5KJVA 1C3UA 4BAAA 1NDIA 2QGAB 3UNVA 1FUQA 1L5AA 2FY4A 1Q6XA 2I9DA 1AUWA 1E2OA 1T6JA 1EADA 5T3EA 3KDZA 1JSWA 1DCNA 1K7WA 3NZ4A 2VL7A 1T7NA 2FY5A
chains in the Genus database with same CATH topology
1EAEA 2E1VA 4CLAA 1Q23A 2BGHA 4A15A 1EACA 1CLAA 2II5A 2RKTA 2VSQA 2II3A 1NOCB 1DPBA 2E1UA 3MAEA 5KJWA 2JGPA 5DU9A 4N72A 5KJTA 3U9BA 1QCAA 3CLAA 3CRW1 2II4A 1XMCA 4HVMA 2XHGA 4NLEA 4KE4A 1EAFA 4KECA 5DUAA 1XMDA 1C4TA 2E1TA 1Q9JA 5FANA 1XL8A 1XL7A 3CRVA 4JN5A 3U9FA 2CLAA 4G0BA 5KJVA 1DPDA 3L60A 5KJSA 1L5AA 2XR7A 3B30A 1EAAA 4JN3A 1DPCA 1SCZA 2I9DA 3FP0A 1E2OA 2E9FA 2ZBAA 1EADA 3FOTA 5T3EA 5H8WA 2VSFA 5FALA 4G22A 5KJUA 1EABA 1PD5A 4G2MA 1CIAA 2VL7A 2RKVA 3B2SA 2IHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAE A;  2E1V A;  4CLA A;  1Q23 A;  2BGH A;  2II5 A;  1EAC A;  1CLA A;  2RKT A;  4G0B A;  2VSQ A;  2II3 A;  1NOC B;  1DPB A;  2E1U A;  3MAE A;  5KJW A;  2JGP A;  5DU9 A;  4N72 A;  5KJT A;  3U9B A;  1QCA A;  3CLA A;  2II4 A;  1XMC A;  4HVM A;  2XHG A;  4KE4 A;  1EAF A;  4KEC A;  5DUA A;  1XMD A;  1C4T A;  2E1T A;  1Q9J A;  5FAN A;  1XL8 A;  1XL7 A;  4JN5 A;  3U9F A;  2CLA A;  5KJV A;  1DPD A;  3L60 A;  5KJS A;  1L5A A;  2XR7 A;  3B30 A;  1EAA A;  4JN3 A;  1DPC A;  1SCZ A;  2I9D A;  3FP0 A;  1E2O A;  2ZBA A;  1EAD A;  3FOT A;  5T3E A;  5FAL A;  5KJU A;  4G22 A;  1EAB A;  1PD5 A;  4G2M A;  1CIA A;  2RKV A;  3B2S A;  2IHW A; 
#chains in the Genus database with same CATH topology
 2O7B A;  1T6P A;  2O7E A;  1NDF A;  4C5S A;  2VSQ A;  3MAE A;  2RJR A;  4C5U A;  4V2R A;  1TJV A;  1GKM A;  1EAF A;  5DUA A;  1XWO A;  2E1T A;  1Q9J A;  2H3U A;  1U16 A;  1S5O A;  3R6V A;  3QBP A;  4JN5 A;  3OCF A;  1I0A A;  3L60 A;  2PTQ A;  1NM8 A;  1TJW A;  1FUR A;  2XR7 A;  4JN3 A;  1TJU A;  1DPC A;  1RE5 A;  2VD6 A;  2FW3 A;  2PTS A;  3FP0 A;  2E9F A;  1NDB A;  2NYN A;  2YII A;  1EAB A;  5KJS A;  1VDK A;  1T7O A;  4ADM A;  1J3U A;  5EYT A;  1EAE A;  3C8T A;  2E1V A;  4EEI A;  2PTR A;  5EYV A;  4A15 A;  1Q23 A;  1CLA A;  2BGH A;  4G0B A;  4EP9 A;  1NOC B;  1DPB A;  4N72 A;  5KJT A;  3CZO A;  1QCA A;  1U15 A;  4EYW A;  4NSL A;  2X75 A;  4HVM A;  5HW2 A;  2FY2 A;  4HGV A;  1C4T A;  4APB A;  5F92 A;  4MX2 A;  4FFX A;  1YFE A;  3U9F A;  2O7F A;  2O7D A;  2FYO A;  2HVG A;  1Q5N A;  3GZH A;  4EFC A;  3B30 A;  4EPH A;  5F91 A;  1C3C A;  1TJ7 A;  3FOT A;  5FAL A;  2RJS A;  4G2M A;  3RRP A;  2H3P A;  2RKV A;  1KQ7 A;  4CLA A;  3GTD A;  3RD8 A;  3R6Y A;  4CQ5 A;  1DOF A;  2II3 A;  2FUS A;  4C5R A;  2RCU A;  5DU9 A;  2O78 A;  3U9B A;  3KDY A;  4ADL A;  3OCE A;  1HY1 A;  1YIS A;  2II4 A;  3CLA A;  2PFM A;  2XHG A;  4NLE A;  2O6Y A;  4KE4 A;  5FAN A;  1T7Q A;  3BHG A;  3CRV A;  1Y2M A;  3NO9 A;  2H3W A;  4FLC A;  2CLA A;  1DPD A;  4BAB A;  1EAA A;  5D6B A;  1SCZ A;  1HY0 A;  2ZBA A;  5KJU A;  5H8W A;  2VSF A;  4G22 A;  4V2Q A;  1PD5 A;  1T1U A;  1CIA A;  2RKT A;  3B2S A;  2IHW A;  4APA A;  2DEB A;  1FUP A;  2NYF A;  2H4T A;  1GK2 A;  1EAC A;  2II5 A;  5KJW A;  2E1U A;  3E04 A;  2JGP A;  2QVE A;  3TV2 A;  2OHY A;  3R6Q A;  3CRW 1;  1XMC A;  1EB4 A;  1FUO A;  1W27 A;  1K62 A;  4KEC A;  1GK3 A;  1XMD A;  1B8F A;  1GKJ A;  1XL8 A;  1YFM A;  2J91 A;  1XL7 A;  4C6G A;  2FY3 A;  5KJV A;  1C3U A;  4BAA A;  1NDI A;  2QGA B;  3UNV A;  1FUQ A;  1L5A A;  2FY4 A;  1Q6X A;  2I9D A;  1AUW A;  1E2O A;  1T6J A;  1EAD A;  5T3E A;  3KDZ A;  1JSW A;  1DCN A;  1K7W A;  3NZ4 A;  2VL7 A;  1T7N A;  2FY5 A; 
#chains in the Genus database with same CATH homology
 1EAE A;  2E1V A;  4CLA A;  1Q23 A;  2BGH A;  4A15 A;  1EAC A;  1CLA A;  2II5 A;  2RKT A;  2VSQ A;  2II3 A;  1NOC B;  1DPB A;  2E1U A;  3MAE A;  5KJW A;  2JGP A;  5DU9 A;  4N72 A;  5KJT A;  3U9B A;  1QCA A;  3CLA A;  3CRW 1;  2II4 A;  1XMC A;  4HVM A;  2XHG A;  4NLE A;  4KE4 A;  1EAF A;  4KEC A;  5DUA A;  1XMD A;  1C4T A;  2E1T A;  1Q9J A;  5FAN A;  1XL8 A;  1XL7 A;  3CRV A;  4JN5 A;  3U9F A;  2CLA A;  4G0B A;  5KJV A;  1DPD A;  3L60 A;  5KJS A;  1L5A A;  2XR7 A;  3B30 A;  1EAA A;  4JN3 A;  1DPC A;  1SCZ A;  2I9D A;  3FP0 A;  1E2O A;  2E9F A;  2ZBA A;  1EAD A;  3FOT A;  5T3E A;  5H8W A;  2VSF A;  5FAL A;  4G22 A;  5KJU A;  1EAB A;  1PD5 A;  4G2M A;  1CIA A;  2VL7 A;  2RKV A;  3B2S A;  2IHW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...