1XL8A

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine
Total Genus 205
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 205
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl8A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl8A03
2E1UA 2II5A 5KJVA 3B30A 2CLAA 4KE4A 1QCAA 3L60A 1XL8A 1CLAA 1Q9JA 5FANA 1E2OA 5DUAA 4HVMA 5KJTA 1DPDA 1Q23A 2E1VA 3MAEA 4JN3A 2II4A 2VSQA 4N72A 1L5AA 3FP0A 5KJWA 2RKVA 1SCZA 2JGPA 4G2MA 4CLAA 1C4TA 1NOCB 1EAEA 2XR7A 3U9FA 4JN5A 4G0BA 1DPBA 4KECA 1PD5A 3B2SA 2II3A 1EAFA 5DU9A 2I9DA 2RKTA 1XMCA 4G22A 5KJSA 2XHGA 2IHWA 5KJUA 3U9BA 1EAAA 3FOTA 1EADA 1XMDA 1CIAA 1DPCA 2BGHA 2ZBAA 3CLAA 1EABA 5FALA 1XL7A 2E1TA 5T3EA 1EACA
chains in the Genus database with same CATH superfamily
5KJVA 2FY2A 1T7QA 3L60A 4EFCA 4V2QA 3CZOA 2RJRA 2YIIA 2NYFA 1YISA 1Q23A 4JN3A 2FUSA 3OCEA 2XR7A 4G0BA 1K7WA 1PD5A 3GTDA 1W27A 1S5OA 5HW2A 1EAFA 4FLCA 1FUOA 3R6VA 2RKTA 5KJSA 1GK2A 2E9FA 1FUPA 2IHWA 4EYWA 4CQ5A 2O7FA 1T6PA 1EB4A 1XWOA 1EADA 1AUWA 3BHGA 4A15A 1TJ7A 1XL7A 3KDZA 4NLEA 4BAAA 4EEIA 5T3EA 2CLAA 1VDKA 4APBA 1YFEA 5F92A 1XL8A 1CLAA 5FANA 4HVMA 5DUAA 1NDBA 1YFMA 5KJTA 1NM8A 2VSQA 3FP0A 2VSFA 2RKVA 1HY0A 3NZ4A 4EP9A 4APAA 2O78A 1RE5A 2PTQA 1TJVA 3C8TA 2H3PA 2II3A 3E04A 1NDIA 1DOFA 1FUQA 4G22A 3RD8A 2XHGA 4HGVA 1B8FA 3NO9A 2FY4A 2FW3A 1T6JA 1T7OA 2H4TA 2ZBAA 5DU9A 2E1TA 1KQ7A 2FY5A 2II5A 5KJWA 4KE4A 1QCAA 1TJWA 1FURA 1I0AA 1E2OA 2NYNA 1DPDA 5D6BA 2E1VA 1L5AA 4N72A 2O7DA 2RCUA 4C5UA 1T1UA 1U15A 1SCZA 2JGPA 4G2MA 3OCFA 4CLAA 1EAEA 1NOCB 1J3UA 5H8WA 1HY1A 1C3CA 1DPBA 4KECA 1DCNA 3GZHA 2O7BA 4V2RA 3CRW1 1Q6XA 5KJUA 3U9BA 2VD6A 2PTRA 2DEBA 4EPHA 1EAAA 4NSLA 3UNVA 1K62A 1XMDA 3FOTA 2FYOA 4C5RA 2BGHA 3CLAA 1Y2MA 3QBPA 1EACA 2E1UA 3B30A 2QGAB 1NDFA 5F91A 2J91A 1U16A 2QVEA 2RJSA 4ADLA 1T7NA 1Q9JA 2O7EA 1GKJA 3R6QA 2H3WA 3CRVA 3MAEA 2II4A 2OHYA 1TJUA 2H3UA 1C4TA 4BABA 4ADMA 3U9FA 1C3UA 4JN5A 3B2SA 2I9DA 4MX2A 1XMCA 2O6YA 2VL7A 4C6GA 3TV2A 4C5SA 1GKMA 2PTSA 3RRPA 2FY3A 5EYTA 1CIAA 5EYVA 3KDYA 4FFXA 2X75A 1DPCA 5FALA 1JSWA 1GK3A 2PFMA 3R6YA 1EABA 2HVGA 1Q5NA
chains in the Genus database with same CATH topology
2E1UA 2II5A 5KJVA 3B30A 2CLAA 4KE4A 1QCAA 3L60A 1XL8A 1CLAA 1Q9JA 5FANA 5KJWA 1E2OA 5DUAA 4HVMA 5KJTA 1DPDA 1Q23A 3CRVA 2E1VA 3MAEA 2II4A 2VSQA 4JN3A 4N72A 3FP0A 1L5AA 2VSFA 2RKVA 1SCZA 2JGPA 4G2MA 4CLAA 1C4TA 1EAEA 1NOCB 2XR7A 3U9FA 5H8WA 4JN5A 4G0BA 1DPBA 4KECA 1PD5A 3B2SA 2II3A 1EAFA 5DU9A 2I9DA 2RKTA 1XMCA 2VL7A 4G22A 5KJSA 2XHGA 2E9FA 3CRW1 2IHWA 5KJUA 3U9BA 1EAAA 3FOTA 1XMDA 1CIAA 1DPCA 1EADA 2BGHA 2ZBAA 4A15A 1EABA 4NLEA 1XL7A 3CLAA 5FALA 2E1TA 5T3EA 1EACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1U A;  2II5 A;  5KJV A;  3B30 A;  2CLA A;  4KE4 A;  1QCA A;  3L60 A;  1XL8 A;  1CLA A;  1Q9J A;  5FAN A;  1E2O A;  5DUA A;  4HVM A;  5KJT A;  1DPD A;  1Q23 A;  2E1V A;  3MAE A;  4JN3 A;  2II4 A;  2VSQ A;  4N72 A;  1L5A A;  3FP0 A;  5KJW A;  2RKV A;  1SCZ A;  2JGP A;  4G2M A;  4CLA A;  1C4T A;  1NOC B;  1EAE A;  2XR7 A;  3U9F A;  4JN5 A;  4G0B A;  1DPB A;  4KEC A;  1PD5 A;  3B2S A;  2II3 A;  1EAF A;  5DU9 A;  2I9D A;  2RKT A;  1XMC A;  4G22 A;  5KJS A;  2XHG A;  2IHW A;  5KJU A;  3U9B A;  1EAA A;  3FOT A;  1EAD A;  1XMD A;  1CIA A;  1DPC A;  2BGH A;  2ZBA A;  3CLA A;  1EAB A;  5FAL A;  1XL7 A;  2E1T A;  5T3E A;  1EAC A; 
#chains in the Genus database with same CATH topology
 5KJV A;  2FY2 A;  1T7Q A;  3L60 A;  4EFC A;  4V2Q A;  3CZO A;  2RJR A;  2YII A;  2NYF A;  1YIS A;  1Q23 A;  4JN3 A;  2FUS A;  3OCE A;  2XR7 A;  4G0B A;  1K7W A;  1PD5 A;  3GTD A;  1W27 A;  1S5O A;  5HW2 A;  1EAF A;  4FLC A;  1FUO A;  3R6V A;  2RKT A;  5KJS A;  1GK2 A;  2E9F A;  1FUP A;  2IHW A;  4EYW A;  4CQ5 A;  2O7F A;  1T6P A;  1EB4 A;  1XWO A;  1EAD A;  1AUW A;  3BHG A;  4A15 A;  1TJ7 A;  1XL7 A;  3KDZ A;  4NLE A;  4BAA A;  4EEI A;  5T3E A;  2CLA A;  1VDK A;  4APB A;  1YFE A;  5F92 A;  1XL8 A;  1CLA A;  5FAN A;  4HVM A;  5DUA A;  1NDB A;  1YFM A;  5KJT A;  1NM8 A;  2VSQ A;  3FP0 A;  2VSF A;  2RKV A;  1HY0 A;  3NZ4 A;  4EP9 A;  4APA A;  2O78 A;  1RE5 A;  2PTQ A;  1TJV A;  3C8T A;  2H3P A;  2II3 A;  3E04 A;  1NDI A;  1DOF A;  1FUQ A;  4G22 A;  3RD8 A;  2XHG A;  4HGV A;  1B8F A;  3NO9 A;  2FY4 A;  2FW3 A;  1T6J A;  1T7O A;  2H4T A;  2ZBA A;  5DU9 A;  2E1T A;  1KQ7 A;  2FY5 A;  2II5 A;  5KJW A;  4KE4 A;  1QCA A;  1TJW A;  1FUR A;  1I0A A;  1E2O A;  2NYN A;  1DPD A;  5D6B A;  2E1V A;  1L5A A;  4N72 A;  2O7D A;  2RCU A;  4C5U A;  1T1U A;  1U15 A;  1SCZ A;  2JGP A;  4G2M A;  3OCF A;  4CLA A;  1EAE A;  1NOC B;  1J3U A;  5H8W A;  1HY1 A;  1C3C A;  1DPB A;  4KEC A;  1DCN A;  3GZH A;  2O7B A;  4V2R A;  3CRW 1;  1Q6X A;  5KJU A;  3U9B A;  2VD6 A;  2PTR A;  2DEB A;  4EPH A;  1EAA A;  4NSL A;  3UNV A;  1K62 A;  1XMD A;  3FOT A;  2FYO A;  4C5R A;  2BGH A;  3CLA A;  1Y2M A;  3QBP A;  1EAC A;  2E1U A;  3B30 A;  2QGA B;  1NDF A;  5F91 A;  2J91 A;  1U16 A;  2QVE A;  2RJS A;  4ADL A;  1T7N A;  1Q9J A;  2O7E A;  1GKJ A;  3R6Q A;  2H3W A;  3CRV A;  3MAE A;  2II4 A;  2OHY A;  1TJU A;  2H3U A;  1C4T A;  4BAB A;  4ADM A;  3U9F A;  1C3U A;  4JN5 A;  3B2S A;  2I9D A;  4MX2 A;  1XMC A;  2O6Y A;  2VL7 A;  4C6G A;  3TV2 A;  4C5S A;  1GKM A;  2PTS A;  3RRP A;  2FY3 A;  5EYT A;  1CIA A;  5EYV A;  3KDY A;  4FFX A;  2X75 A;  1DPC A;  5FAL A;  1JSW A;  1GK3 A;  2PFM A;  3R6Y A;  1EAB A;  2HVG A;  1Q5N A; 
#chains in the Genus database with same CATH homology
 2E1U A;  2II5 A;  5KJV A;  3B30 A;  2CLA A;  4KE4 A;  1QCA A;  3L60 A;  1XL8 A;  1CLA A;  1Q9J A;  5FAN A;  5KJW A;  1E2O A;  5DUA A;  4HVM A;  5KJT A;  1DPD A;  1Q23 A;  3CRV A;  2E1V A;  3MAE A;  2II4 A;  2VSQ A;  4JN3 A;  4N72 A;  3FP0 A;  1L5A A;  2VSF A;  2RKV A;  1SCZ A;  2JGP A;  4G2M A;  4CLA A;  1C4T A;  1EAE A;  1NOC B;  2XR7 A;  3U9F A;  5H8W A;  4JN5 A;  4G0B A;  1DPB A;  4KEC A;  1PD5 A;  3B2S A;  2II3 A;  1EAF A;  5DU9 A;  2I9D A;  2RKT A;  1XMC A;  2VL7 A;  4G22 A;  5KJS A;  2XHG A;  2E9F A;  3CRW 1;  2IHW A;  5KJU A;  3U9B A;  1EAA A;  3FOT A;  1XMD A;  1CIA A;  1DPC A;  1EAD A;  2BGH A;  2ZBA A;  4A15 A;  1EAB A;  4NLE A;  1XL7 A;  3CLA A;  5FAL A;  2E1T A;  5T3E A;  1EAC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...