1XL8A

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 205
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl8A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl8A03
1EABA 4G2MA 4G0BA 1PD5A 5DUAA 1SCZA 5T3EA 1QCAA 3U9FA 5KJUA 2ZBAA 5FALA 1L5AA 1XL7A 2CLAA 2E1TA 1XL8A 2IHWA 1E2OA 4KE4A 2RKTA 1EAEA 3CLAA 5KJTA 4CLAA 3MAEA 2E1UA 2E1VA 3U9BA 1Q23A 4JN3A 1XMDA 2RKVA 1EACA 5KJSA 1EADA 1Q9JA 3L60A 1NOCB 1CIAA 2II5A 1DPCA 1DPDA 3FP0A 4N72A 3B30A 4JN5A 5DU9A 5FANA 5KJVA 2BGHA 2XR7A 2JGPA 1EAFA 1CLAA 1EAAA 2II3A 2XHGA 5KJWA 4G22A 2II4A 2VSQA 4KECA 2I9DA 3B2SA 3FOTA 1DPBA 4HVMA 1XMCA 1C4TA
chains in the Genus database with same CATH superfamily
4G2MA 2VL7A 4APBA 1QCAA 5FALA 2OHYA 2PTQA 1C3CA 4EFCA 2PFMA 3E04A 1XL8A 4FLCA 1NDIA 1EAEA 1FUQA 5F91A 3MAEA 3NZ4A 3U9BA 2DEBA 2FY3A 3CRVA 3L60A 1DCNA 4EEIA 1NDBA 1CIAA 5DU9A 1KQ7A 5KJVA 1XWOA 2BGHA 1EAAA 1T7QA 1TJ7A 4KECA 3KDYA 3B2SA 1YFEA 3GZHA 3FOTA 4A15A 4HVMA 1XMCA 3KDZA 4C5SA 1EABA 4G0BA 1PD5A 4ADLA 3NO9A 5T3EA 3U9FA 2ZBAA 4NSLA 3OCFA 1S5OA 5EYTA 4ADMA 4C5RA 2CLAA 2FUSA 4KE4A 2PTSA 4CLAA 2FY5A 2PTRA 1FURA 1GK3A 4JN3A 2RJSA 1EACA 2RKVA 5D6BA 5F92A 3TV2A 2VD6A 1EADA 1NOCB 2RCUA 4EYWA 2II5A 1DPCA 2J91A 3C8TA 2H3WA 3FP0A 4N72A 5FANA 1W27A 1U15A 4APAA 5H8WA 1CLAA 2II3A 4BAAA 1NDFA 2II4A 1TJWA 2FY4A 2YIIA 3BHGA 2O7FA 3UNVA 1Q5NA 1Q6XA 1C4TA 4V2RA 1NM8A 2RJRA 5DUAA 2HVGA 3R6QA 2QVEA 5HW2A 5KJUA 3OCEA 2VSFA 1K7WA 4CQ5A 1XL7A 1L5AA 2O7DA 2FY2A 5KJTA 2NYNA 1T6PA 3QBPA 1TJVA 2X75A 1GK2A 1EB4A 3R6VA 1C3UA 2H3UA 5KJSA 1Q9JA 1TJUA 2O6YA 4V2QA 1HY0A 3CRW1 1FUOA 1GKJA 1DPDA 3B30A 4JN5A 4C6GA 2XR7A 1J3UA 3GTDA 2FW3A 2JGPA 1HY1A 1EAFA 4FFXA 4EPHA 1U16A 2H3PA 2I9DA 1T7NA 1DPBA 1T6JA 1SCZA 1B8FA 1RE5A 1YFMA 2QGAB 2E1TA 1GKMA 1E2OA 2O7BA 1T1UA 1K62A 2IHWA 1AUWA 2RKTA 3CLAA 4C5UA 3CZOA 4NLEA 1YISA 2E1UA 2E1VA 2FYOA 1VDKA 3RD8A 1Q23A 1XMDA 2NYFA 1I0AA 2H4TA 1T7OA 4MX2A 3R6YA 2O78A 1JSWA 5EYVA 1DOFA 2XHGA 3RRPA 1FUPA 4G22A 5KJWA 4HGVA 4BABA 2E9FA 1Y2MA 2VSQA 2O7EA 4EP9A
chains in the Genus database with same CATH topology
4G2MA 2VL7A 1QCAA 5FALA 1XL8A 1EAEA 3MAEA 3U9BA 3CRVA 3L60A 1CIAA 5DU9A 5KJVA 2BGHA 1EAAA 4KECA 3B2SA 3FOTA 4A15A 4HVMA 1XMCA 1EABA 4G0BA 1PD5A 5T3EA 3U9FA 2ZBAA 2CLAA 4KE4A 4CLAA 4JN3A 2RKVA 1EACA 1EADA 1NOCB 2II5A 1DPCA 3FP0A 4N72A 5FANA 5H8WA 1CLAA 2II3A 2II4A 1C4TA 5DUAA 5KJUA 2VSFA 1L5AA 1XL7A 5KJTA 5KJSA 1Q9JA 3CRW1 1DPDA 3B30A 4JN5A 2XR7A 2JGPA 1EAFA 2I9DA 1DPBA 1SCZA 2E1TA 2IHWA 1E2OA 2RKTA 3CLAA 4NLEA 2E1UA 2E1VA 1Q23A 1XMDA 2XHGA 5KJWA 4G22A 2E9FA 2VSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAB A;  4G2M A;  4G0B A;  1PD5 A;  5DUA A;  1SCZ A;  5T3E A;  1QCA A;  3U9F A;  5KJU A;  2ZBA A;  5FAL A;  1L5A A;  1XL7 A;  2CLA A;  2E1T A;  1XL8 A;  2IHW A;  1E2O A;  4KE4 A;  2RKT A;  1EAE A;  3CLA A;  5KJT A;  4CLA A;  3MAE A;  2E1U A;  2E1V A;  3U9B A;  1Q23 A;  4JN3 A;  1XMD A;  2RKV A;  1EAC A;  5KJS A;  1EAD A;  1Q9J A;  3L60 A;  1NOC B;  1CIA A;  2II5 A;  1DPC A;  1DPD A;  3FP0 A;  4N72 A;  3B30 A;  4JN5 A;  5DU9 A;  5FAN A;  5KJV A;  2BGH A;  2XR7 A;  2JGP A;  1EAF A;  1CLA A;  1EAA A;  2II3 A;  2XHG A;  5KJW A;  4G22 A;  2II4 A;  2VSQ A;  4KEC A;  2I9D A;  3B2S A;  3FOT A;  1DPB A;  4HVM A;  1XMC A;  1C4T A; 
#chains in the Genus database with same CATH topology
 4G2M A;  2VL7 A;  4APB A;  1QCA A;  5FAL A;  2OHY A;  2PTQ A;  1C3C A;  4EFC A;  2PFM A;  3E04 A;  1XL8 A;  4FLC A;  1NDI A;  1EAE A;  1FUQ A;  5F91 A;  3MAE A;  3NZ4 A;  3U9B A;  2DEB A;  2FY3 A;  3CRV A;  3L60 A;  1DCN A;  4EEI A;  1NDB A;  1CIA A;  5DU9 A;  1KQ7 A;  5KJV A;  1XWO A;  2BGH A;  1EAA A;  1T7Q A;  1TJ7 A;  4KEC A;  3KDY A;  3B2S A;  1YFE A;  3GZH A;  3FOT A;  4A15 A;  4HVM A;  1XMC A;  3KDZ A;  4C5S A;  1EAB A;  4G0B A;  1PD5 A;  4ADL A;  3NO9 A;  5T3E A;  3U9F A;  2ZBA A;  4NSL A;  3OCF A;  1S5O A;  5EYT A;  4ADM A;  4C5R A;  2CLA A;  2FUS A;  4KE4 A;  2PTS A;  4CLA A;  2FY5 A;  2PTR A;  1FUR A;  1GK3 A;  4JN3 A;  2RJS A;  1EAC A;  2RKV A;  5D6B A;  5F92 A;  3TV2 A;  2VD6 A;  1EAD A;  1NOC B;  2RCU A;  4EYW A;  2II5 A;  1DPC A;  2J91 A;  3C8T A;  2H3W A;  3FP0 A;  4N72 A;  5FAN A;  1W27 A;  1U15 A;  4APA A;  5H8W A;  1CLA A;  2II3 A;  4BAA A;  1NDF A;  2II4 A;  1TJW A;  2FY4 A;  2YII A;  3BHG A;  2O7F A;  3UNV A;  1Q5N A;  1Q6X A;  1C4T A;  4V2R A;  1NM8 A;  2RJR A;  5DUA A;  2HVG A;  3R6Q A;  2QVE A;  5HW2 A;  5KJU A;  3OCE A;  2VSF A;  1K7W A;  4CQ5 A;  1XL7 A;  1L5A A;  2O7D A;  2FY2 A;  5KJT A;  2NYN A;  1T6P A;  3QBP A;  1TJV A;  2X75 A;  1GK2 A;  1EB4 A;  3R6V A;  1C3U A;  2H3U A;  5KJS A;  1Q9J A;  1TJU A;  2O6Y A;  4V2Q A;  1HY0 A;  3CRW 1;  1FUO A;  1GKJ A;  1DPD A;  3B30 A;  4JN5 A;  4C6G A;  2XR7 A;  1J3U A;  3GTD A;  2FW3 A;  2JGP A;  1HY1 A;  1EAF A;  4FFX A;  4EPH A;  1U16 A;  2H3P A;  2I9D A;  1T7N A;  1DPB A;  1T6J A;  1SCZ A;  1B8F A;  1RE5 A;  1YFM A;  2QGA B;  2E1T A;  1GKM A;  1E2O A;  2O7B A;  1T1U A;  1K62 A;  2IHW A;  1AUW A;  2RKT A;  3CLA A;  4C5U A;  3CZO A;  4NLE A;  1YIS A;  2E1U A;  2E1V A;  2FYO A;  1VDK A;  3RD8 A;  1Q23 A;  1XMD A;  2NYF A;  1I0A A;  2H4T A;  1T7O A;  4MX2 A;  3R6Y A;  2O78 A;  1JSW A;  5EYV A;  1DOF A;  2XHG A;  3RRP A;  1FUP A;  4G22 A;  5KJW A;  4HGV A;  4BAB A;  2E9F A;  1Y2M A;  2VSQ A;  2O7E A;  4EP9 A; 
#chains in the Genus database with same CATH homology
 4G2M A;  2VL7 A;  1QCA A;  5FAL A;  1XL8 A;  1EAE A;  3MAE A;  3U9B A;  3CRV A;  3L60 A;  1CIA A;  5DU9 A;  5KJV A;  2BGH A;  1EAA A;  4KEC A;  3B2S A;  3FOT A;  4A15 A;  4HVM A;  1XMC A;  1EAB A;  4G0B A;  1PD5 A;  5T3E A;  3U9F A;  2ZBA A;  2CLA A;  4KE4 A;  4CLA A;  4JN3 A;  2RKV A;  1EAC A;  1EAD A;  1NOC B;  2II5 A;  1DPC A;  3FP0 A;  4N72 A;  5FAN A;  5H8W A;  1CLA A;  2II3 A;  2II4 A;  1C4T A;  5DUA A;  5KJU A;  2VSF A;  1L5A A;  1XL7 A;  5KJT A;  5KJS A;  1Q9J A;  3CRW 1;  1DPD A;  3B30 A;  4JN5 A;  2XR7 A;  2JGP A;  1EAF A;  2I9D A;  1DPB A;  1SCZ A;  2E1T A;  2IHW A;  1E2O A;  2RKT A;  3CLA A;  4NLE A;  2E1U A;  2E1V A;  1Q23 A;  1XMD A;  2XHG A;  5KJW A;  4G22 A;  2E9F A;  2VSQ A; 
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