1XMGE

Crystal structure of apo methane monooxygenase hydroxylase from m. capsulatus (bath)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methane monooxygenase component A alpha chain
publication title Preparation and X-ray Structures of Metal-Free, Dicobalt and Dimanganese Forms of Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath)
pubmed doi rcsb
total genus 62
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2004-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xmgE01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xmgE02
1FZIE 1FZ3E 1FZ6E 1MHYG 1FZ2E 1MMOG 1XVGE 1XVEE 1FZ9E 1MHZG 1XVBE 1FZ1E 1FZ7E 1FZHE 1XVCE 1FZ5E 1XVDE 1XMGE 1FZ8E 4GAMC 1XU3E 1XMHE 1MTYG 1FZ4E 1FYZE 1XVFE 1XMFE 1XU5E 1FZ0E
chains in the Genus database with same CATH superfamily
1XL3C 4FJIA 4ICGC 4X5MA 4DU3A 2P5OA 4M42A 4RG8A 3CFPA 1XVEE 1MHZG 3E4WA 3C6NB 3HGLA 2OZMA 3L8BA 4KHUA 2MMBA 3TABA 4FJ7A 1FZ5E 3K2OA 4M41A 4EYWA 3SUOA 2OZSA 1JW2A 2PFTA 3QEPA 3SPYA 3QEIA 1FZ8E 3C94A 3SUQA 4M3ZA 3SQ4A 3L1NA 4M3YA 3RMCA 2JH8A 4HCBA 4FJLA 4FVMA 4KHQA 4FJGA 2ATQA 4J2DA 4DTXA 4KHYA 4EPHA 3SQ0A 1XMFE 4ADNA 4ADOA 4FK0A 3MKSB 4JS5A 3L2OB 4KHWA 4DTUA 2RCUA 2FW3A 4QNDA 3SUPA 4IT5A 3RWUA 1FZIE 1FZ3E 2PFVA 3SVIA 2LF6A 2P5GA 2OYQA 3L0MA 3NE6A 3LD8A 3SCXA 1FZ2E 2B8IA 1FZ9E 3NAEA 1XVBE 4AKIA 3N1EA 3QEXA 4DU4A 3SJJA 1FZ1E 4E3SA 2JPNA 2MW2A 1WAJA 3TL8B 1XVCE 4FJNA 3UO2A 4RL5A 3TAGA 1XVDE 3E4YA 3QEVA 3NCIA 3J27A 3LZIA 4FJMA 1XMHE 3SPZA 1FXXA 1WAFA 2B1EA 2OVRB 2VJ4A 3QETA 5IREA 3SQ2A 3LDSA 2VIXA 1Q9YA 2DY4A 4FJJA 3CFOA 4E4BA 4FJ9A 3QNNA 1CLQA 1P22A 4I6JB 1FPOA 1FZ6E 3RMBA 4RNGA 4FJXA 4DTNA 2E32A 1MHYG 4HCCA 4M3TA 1MMOG 4M3UA 1LDKE 2FYOA 2HD0A 4DTMA 4AKGA 4AKHA 3TAEA 3NHGA 2RKHA 5H37A 3SUNA 2H4TA 4M3XA 3RMAA 4AI6A 5IZ7A 2JHPA 4FJ8A 4J2BA 3C6OB 4M45A 1XMGE 3TAFA 4GAMC 1IG9A 2JQTA 4EP9A 4DTPA 2JHAA 1FZ4E 2JHCA 2P1QB 3J2PA 4FJKA 4DTRA 3LZJA 3OGLB 4X5NA 3NGIA 2P1MB 2P1PB 3LDBA 2YB5A 1FZ0E 4B08A 4JRQA 2OVQB 2LF3A 3HGKE 4M3RA 3QNOA 4I9QA 1N1CA 3SI6A 3WSOA 1IH7A 4I9LA 3SNNA 1XVGE 4FK4A 4DTSA 3QERA 2OVPB 2P1OB 2JH9A 3KD1E 2DTUA 2B7MA 3CFRA 4KI6A 4J2EA 4FJ5A 4M3WA 3CQ8A 3TJYA 3BVOA 3HP9A 5IBKB 3N1BA 3UO3A 1FZ7E 1FZHE 4JS4A 2MZWB 3V7DB 3QEWA 4FJHA 1FS1A 3OGMB 2DEBA 2QXFA 1XU3E 4QNCA 3HL8A 3C6PB 3NDKA 3C95A 4DTJA 1MTYG 3QESA 1Q9XA 3RMDA 1FYZE 4J2AA 1XVFE 4KHSA 4DTOA 4DU1A 3KD5E 2VJ5A 3UIQA 4KHNA 4JRPA 2K5SA 2E31A 3S9HA 1XU5E 3SQ1A 3OGKB 1NEXB 2P1NB 4FK2A 4KI4A
chains in the Genus database with same CATH topology
1XL3C 4FJIA 4X5MA 4DU3A 2P5OA 4M42A 4RG8A 3CFPA 1XVEE 1MHZG 3E4WA 3C6NB 3HGLA 2OZMA 3L8BA 4KHUA 2MMBA 3TABA 4FJ7A 1FZ5E 3K2OA 4M41A 4EYWA 3SUOA 2OZSA 2PFTA 3QEPA 3SPYA 3QEIA 1FZ8E 3C94A 3SUQA 4M3ZA 3SQ4A 3L1NA 4M3YA 3RMCA 2JH8A 4HCBA 4FJLA 4FVMA 4KHQA 4FJGA 2ATQA 4J2DA 4DTXA 4KHYA 4EPHA 3SQ0A 1XMFE 4ADNA 4ADOA 4FK0A 3MKSB 4JS5A 3L2OB 4KHWA 4DTUA 2RCUA 2FW3A 4QNDA 3SUPA 3RWUA 1FZIE 1FZ3E 2PFVA 3SVIA 2LF6A 2P5GA 2OYQA 3L0MA 3NE6A 3LD8A 3SCXA 1FZ2E 2B8IA 1FZ9E 3NAEA 1XVBE 4AKIA 3N1EA 3QEXA 4DU4A 3SJJA 1FZ1E 4E3SA 2JPNA 1WAJA 3TL8B 1XVCE 4FJNA 4RL5A 3TAGA 1XVDE 3E4YA 3QEVA 3NCIA 3J27A 3LZIA 4FJMA 1XMHE 3SPZA 1FXXA 1WAFA 2B1EA 2OVRB 2VJ4A 3QETA 5IREA 3SQ2A 3LDSA 2VIXA 1Q9YA 2DY4A 4FJJA 3CFOA 4E4BA 4FJ9A 3QNNA 1CLQA 1P22A 4I6JB 3RMBA 1FZ6E 4FJXA 4RNGA 4DTNA 2E32A 1MHYG 4HCCA 4M3TA 1MMOG 4M3UA 1LDKE 2FYOA 2HD0A 4DTMA 4AKGA 4AKHA 3TAEA 3NHGA 5H37A 3SUNA 2H4TA 4M3XA 3RMAA 4AI6A 5IZ7A 2JHPA 4FJ8A 4J2BA 3C6OB 4M45A 1XMGE 3TAFA 4GAMC 1IG9A 4EP9A 4DTPA 2JHAA 1FZ4E 2JHCA 2P1QB 3J2PA 4FJKA 4DTRA 3LZJA 3OGLB 4X5NA 3NGIA 2P1MB 2P1PB 3LDBA 2YB5A 1FZ0E 4B08A 4JRQA 2OVQB 2LF3A 3HGKE 4M3RA 3QNOA 4I9QA 3SI6A 3WSOA 1IH7A 4I9LA 3SNNA 1XVGE 4FK4A 4DTSA 3QERA 2OVPB 2P1OB 2JH9A 3KD1E 2DTUA 2B7MA 3CFRA 4KI6A 4J2EA 4FJ5A 4M3WA 3CQ8A 3TJYA 3HP9A 5IBKB 3N1BA 1FZ7E 1FZHE 4JS4A 2MZWB 3V7DB 3QEWA 4FJHA 1FS1A 3OGMB 2DEBA 2QXFA 1XU3E 4QNCA 3HL8A 3C6PB 3NDKA 3C95A 4DTJA 1MTYG 3QESA 1Q9XA 3RMDA 1FYZE 4J2AA 1XVFE 4KHSA 4DTOA 4DU1A 3KD5E 2VJ5A 3UIQA 4KHNA 4JRPA 2E31A 3S9HA 1XU5E 3SQ1A 3OGKB 1NEXB 2P1NB 4FK2A 4KI4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZI E;  1FZ3 E;  1FZ6 E;  1MHY G;  1FZ2 E;  1MMO G;  1XVG E;  1XVE E;  1FZ9 E;  1MHZ G;  1XVB E;  1FZ1 E;  1FZ7 E;  1FZH E;  1XVC E;  1FZ5 E;  1XVD E;  1XMG E;  1FZ8 E;  4GAM C;  1XU3 E;  1XMH E;  1MTY G;  1FZ4 E;  1FYZ E;  1XVF E;  1XMF E;  1XU5 E;  1FZ0 E; 
#chains in the Genus database with same CATH topology
 1XL3 C;  4FJI A;  4ICG C;  4X5M A;  4DU3 A;  2P5O A;  4M42 A;  4RG8 A;  3CFP A;  1XVE E;  1MHZ G;  3E4W A;  3C6N B;  3HGL A;  2OZM A;  3L8B A;  4KHU A;  2MMB A;  3TAB A;  4FJ7 A;  1FZ5 E;  3K2O A;  4M41 A;  4EYW A;  3SUO A;  2OZS A;  1JW2 A;  2PFT A;  3QEP A;  3SPY A;  3QEI A;  1FZ8 E;  3C94 A;  3SUQ A;  4M3Z A;  3SQ4 A;  3L1N A;  4M3Y A;  3RMC A;  2JH8 A;  4HCB A;  4FJL A;  4FVM A;  4KHQ A;  4FJG A;  2ATQ A;  4J2D A;  4DTX A;  4KHY A;  4EPH A;  3SQ0 A;  1XMF E;  4ADN A;  4ADO A;  4FK0 A;  3MKS B;  4JS5 A;  3L2O B;  4KHW A;  4DTU A;  2RCU A;  2FW3 A;  4QND A;  3SUP A;  4IT5 A;  3RWU A;  1FZI E;  1FZ3 E;  2PFV A;  3SVI A;  2LF6 A;  2P5G A;  2OYQ A;  3L0M A;  3NE6 A;  3LD8 A;  3SCX A;  1FZ2 E;  2B8I A;  1FZ9 E;  3NAE A;  1XVB E;  4AKI A;  3N1E A;  3QEX A;  4DU4 A;  3SJJ A;  1FZ1 E;  4E3S A;  2JPN A;  2MW2 A;  1WAJ A;  3TL8 B;  1XVC E;  4FJN A;  3UO2 A;  4RL5 A;  3TAG A;  1XVD E;  3E4Y A;  3QEV A;  3NCI A;  3J27 A;  3LZI A;  4FJM A;  1XMH E;  3SPZ A;  1FXX A;  1WAF A;  2B1E A;  2OVR B;  2VJ4 A;  3QET A;  5IRE A;  3SQ2 A;  3LDS A;  2VIX A;  1Q9Y A;  2DY4 A;  4FJJ A;  3CFO A;  4E4B A;  4FJ9 A;  3QNN A;  1CLQ A;  1P22 A;  4I6J B;  1FPO A;  1FZ6 E;  3RMB A;  4RNG A;  4FJX A;  4DTN A;  2E32 A;  1MHY G;  4HCC A;  4M3T A;  1MMO G;  4M3U A;  1LDK E;  2FYO A;  2HD0 A;  4DTM A;  4AKG A;  4AKH A;  3TAE A;  3NHG A;  2RKH A;  5H37 A;  3SUN A;  2H4T A;  4M3X A;  3RMA A;  4AI6 A;  5IZ7 A;  2JHP A;  4FJ8 A;  4J2B A;  3C6O B;  4M45 A;  1XMG E;  3TAF A;  4GAM C;  1IG9 A;  2JQT A;  4EP9 A;  4DTP A;  2JHA A;  1FZ4 E;  2JHC A;  2P1Q B;  3J2P A;  4FJK A;  4DTR A;  3LZJ A;  3OGL B;  4X5N A;  3NGI A;  2P1M B;  2P1P B;  3LDB A;  2YB5 A;  1FZ0 E;  4B08 A;  4JRQ A;  2OVQ B;  2LF3 A;  3HGK E;  4M3R A;  3QNO A;  4I9Q A;  1N1C A;  3SI6 A;  3WSO A;  1IH7 A;  4I9L A;  3SNN A;  1XVG E;  4FK4 A;  4DTS A;  3QER A;  2OVP B;  2P1O B;  2JH9 A;  3KD1 E;  2DTU A;  2B7M A;  3CFR A;  4KI6 A;  4J2E A;  4FJ5 A;  4M3W A;  3CQ8 A;  3TJY A;  3BVO A;  3HP9 A;  5IBK B;  3N1B A;  3UO3 A;  1FZ7 E;  1FZH E;  4JS4 A;  2MZW B;  3V7D B;  3QEW A;  4FJH A;  1FS1 A;  3OGM B;  2DEB A;  2QXF A;  1XU3 E;  4QNC A;  3HL8 A;  3C6P B;  3NDK A;  3C95 A;  4DTJ A;  1MTY G;  3QES A;  1Q9X A;  3RMD A;  1FYZ E;  4J2A A;  1XVF E;  4KHS A;  4DTO A;  4DU1 A;  3KD5 E;  2VJ5 A;  3UIQ A;  4KHN A;  4JRP A;  2K5S A;  2E31 A;  3S9H A;  1XU5 E;  3SQ1 A;  3OGK B;  1NEX B;  2P1N B;  4FK2 A;  4KI4 A; 
#chains in the Genus database with same CATH homology
 1XL3 C;  4FJI A;  4X5M A;  4DU3 A;  2P5O A;  4M42 A;  4RG8 A;  3CFP A;  1XVE E;  1MHZ G;  3E4W A;  3C6N B;  3HGL A;  2OZM A;  3L8B A;  4KHU A;  2MMB A;  3TAB A;  4FJ7 A;  1FZ5 E;  3K2O A;  4M41 A;  4EYW A;  3SUO A;  2OZS A;  2PFT A;  3QEP A;  3SPY A;  3QEI A;  1FZ8 E;  3C94 A;  3SUQ A;  4M3Z A;  3SQ4 A;  3L1N A;  4M3Y A;  3RMC A;  2JH8 A;  4HCB A;  4FJL A;  4FVM A;  4KHQ A;  4FJG A;  2ATQ A;  4J2D A;  4DTX A;  4KHY A;  4EPH A;  3SQ0 A;  1XMF E;  4ADN A;  4ADO A;  4FK0 A;  3MKS B;  4JS5 A;  3L2O B;  4KHW A;  4DTU A;  2RCU A;  2FW3 A;  4QND A;  3SUP A;  3RWU A;  1FZI E;  1FZ3 E;  2PFV A;  3SVI A;  2LF6 A;  2P5G A;  2OYQ A;  3L0M A;  3NE6 A;  3LD8 A;  3SCX A;  1FZ2 E;  2B8I A;  1FZ9 E;  3NAE A;  1XVB E;  4AKI A;  3N1E A;  3QEX A;  4DU4 A;  3SJJ A;  1FZ1 E;  4E3S A;  2JPN A;  1WAJ A;  3TL8 B;  1XVC E;  4FJN A;  4RL5 A;  3TAG A;  1XVD E;  3E4Y A;  3QEV A;  3NCI A;  3J27 A;  3LZI A;  4FJM A;  1XMH E;  3SPZ A;  1FXX A;  1WAF A;  2B1E A;  2OVR B;  2VJ4 A;  3QET A;  5IRE A;  3SQ2 A;  3LDS A;  2VIX A;  1Q9Y A;  2DY4 A;  4FJJ A;  3CFO A;  4E4B A;  4FJ9 A;  3QNN A;  1CLQ A;  1P22 A;  4I6J B;  3RMB A;  1FZ6 E;  4FJX A;  4RNG A;  4DTN A;  2E32 A;  1MHY G;  4HCC A;  4M3T A;  1MMO G;  4M3U A;  1LDK E;  2FYO A;  2HD0 A;  4DTM A;  4AKG A;  4AKH A;  3TAE A;  3NHG A;  5H37 A;  3SUN A;  2H4T A;  4M3X A;  3RMA A;  4AI6 A;  5IZ7 A;  2JHP A;  4FJ8 A;  4J2B A;  3C6O B;  4M45 A;  1XMG E;  3TAF A;  4GAM C;  1IG9 A;  4EP9 A;  4DTP A;  2JHA A;  1FZ4 E;  2JHC A;  2P1Q B;  3J2P A;  4FJK A;  4DTR A;  3LZJ A;  3OGL B;  4X5N A;  3NGI A;  2P1M B;  2P1P B;  3LDB A;  2YB5 A;  1FZ0 E;  4B08 A;  4JRQ A;  2OVQ B;  2LF3 A;  3HGK E;  4M3R A;  3QNO A;  4I9Q A;  3SI6 A;  3WSO A;  1IH7 A;  4I9L A;  3SNN A;  1XVG E;  4FK4 A;  4DTS A;  3QER A;  2OVP B;  2P1O B;  2JH9 A;  3KD1 E;  2DTU A;  2B7M A;  3CFR A;  4KI6 A;  4J2E A;  4FJ5 A;  4M3W A;  3CQ8 A;  3TJY A;  3HP9 A;  5IBK B;  3N1B A;  1FZ7 E;  1FZH E;  4JS4 A;  2MZW B;  3V7D B;  3QEW A;  4FJH A;  1FS1 A;  3OGM B;  2DEB A;  2QXF A;  1XU3 E;  4QNC A;  3HL8 A;  3C6P B;  3NDK A;  3C95 A;  4DTJ A;  1MTY G;  3QES A;  1Q9X A;  3RMD A;  1FYZ E;  4J2A A;  1XVF E;  4KHS A;  4DTO A;  4DU1 A;  3KD5 E;  2VJ5 A;  3UIQ A;  4KHN A;  4JRP A;  2E31 A;  3S9H A;  1XU5 E;  3SQ1 A;  3OGK B;  1NEX B;  2P1N B;  4FK2 A;  4KI4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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