1XNEA

Solution structure of pyrococcus furiosus protein pf0470: the northeast structural genomics consortium target pfr14
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
113
structure length
113
Chain Sequence
MKVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLGRDKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein PF0469
publication title NMR data collection and analysis protocol for high-throughput protein structure determination.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Structural genomics, unknown function
total genus 16
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2004-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 1xneA00
1S04A 1TE7A 2E5OA 2DP9A 2KKUA 3IUWA 2Z0TA 1XNEA 1WK2A
chains in the Genus database with same CATH superfamily
3LWQA 4CI2B 1TE7A 3C0KA 2E5OA 3LWRA 2AUSA 1ZBOA 4Q1TA 1R3EA 2CWWA 3LWVA 3M6UA 1UOYA 2HVYA 1WK2A 3HJWA 1WXXA 4TZ4C 1IQ8A 2EY4A 3UAIA 2J5TA 1ZL3A 1IT7A 2RFKA 2J5VA 3LDFA 3M65A 2DP9A 2ANEA 2FRXA 2KKUA 3LWPA 4CI3B 1Q7HA 3ZV0C 2CX0A 1S04A 2AS0A 4CI1B 1J2BA 2B78A 3HAXA 1K8WA 3MQKA 1ZE1A 3M4XA 3U28A 1WXWA 3M6XA 1SQWA 3M6VA 3D79A 3LWOA 2Z0TA 1XNEA 1R3FA 1ZS7A 2P38A 3HJYA 1ZE2A 2AB4A 1SGVA 4DMGA 3M6WA 2Q07A 2CX1A 1T5YA 3VSEA 2APOA 3IUWA 3LJCA 1IT8A
chains in the Genus database with same CATH topology
1S04A 4C26A 1TE7A 4P78C 2E5OA 2DP9A 2KKUA 1WHZA 3IUWA 2Z0TA 1XNEA 1WK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S04 A;  1TE7 A;  2E5O A;  2DP9 A;  2KKU A;  3IUW A;  2Z0T A;  1XNE A;  1WK2 A; 
#chains in the Genus database with same CATH topology
 3LWQ A;  4CI2 B;  1TE7 A;  3C0K A;  2E5O A;  3LWR A;  2AUS A;  1ZBO A;  4Q1T A;  1R3E A;  2CWW A;  3LWV A;  3M6U A;  1UOY A;  2HVY A;  1WK2 A;  3HJW A;  1WXX A;  4TZ4 C;  1IQ8 A;  2EY4 A;  3UAI A;  2J5T A;  1ZL3 A;  1IT7 A;  2RFK A;  2J5V A;  3LDF A;  3M65 A;  2DP9 A;  2ANE A;  2FRX A;  2KKU A;  3LWP A;  4CI3 B;  1Q7H A;  3ZV0 C;  2CX0 A;  1S04 A;  2AS0 A;  4CI1 B;  1J2B A;  2B78 A;  3HAX A;  1K8W A;  3MQK A;  1ZE1 A;  3M4X A;  3U28 A;  1WXW A;  3M6X A;  1SQW A;  3M6V A;  3D79 A;  3LWO A;  2Z0T A;  1XNE A;  1R3F A;  1ZS7 A;  2P38 A;  3HJY A;  1ZE2 A;  2AB4 A;  1SGV A;  4DMG A;  3M6W A;  2Q07 A;  2CX1 A;  1T5Y A;  3VSE A;  2APO A;  3IUW A;  3LJC A;  1IT8 A; 
#chains in the Genus database with same CATH homology
 1S04 A;  4C26 A;  1TE7 A;  4P78 C;  2E5O A;  2DP9 A;  2KKU A;  1WHZ A;  3IUW A;  2Z0T A;  1XNE A;  1WK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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