1XNEA

Solution structure of pyrococcus furiosus protein pf0470: the northeast structural genomics consortium target pfr14
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
113
structure length
113
Chain Sequence
MKVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLGRDKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein PF0469
publication title NMR data collection and analysis protocol for high-throughput protein structure determination.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 16
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2004-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 1xneA00
2Z0TA 3IUWA 1WK2A 2DP9A 2KKUA 1TE7A 1S04A 2E5OA 1XNEA
chains in the Genus database with same CATH superfamily
1K8WA 1SQWA 1ZBOA 3IUWA 3LWPA 1IT8A 2Q07A 2B78A 1SGVA 2CX0A 3M6WA 3M4XA 2AS0A 2J5VA 3VSEA 4CI2B 2RFKA 2Z0TA 2P38A 2DP9A 3LWQA 1ZS7A 4CI1B 3U28A 1ZE1A 2E5OA 4DMGA 2FRXA 4Q1TA 1XNEA 3LWOA 1WXWA 2HVYA 3HAXA 3HJWA 3M6UA 3HJYA 1WK2A 2CX1A 1TE7A 1S04A 2AB4A 3UAIA 3LDFA 1R3EA 4CI3B 3MQKA 3ZV0C 1R3FA 3D79A 3M65A 1ZL3A 1WXXA 2EY4A 1ZE2A 1T5YA 1Q7HA 3LWVA 3LJCA 3LWRA 2AUSA 2ANEA 2J5TA 1IT7A 2CWWA 2KKUA 3C0KA 4TZ4C 1IQ8A 1J2BA 3M6VA 3M6XA 2APOA 1UOYA
chains in the Genus database with same CATH topology
2Z0TA 3IUWA 1WK2A 2DP9A 4P78C 2KKUA 1TE7A 1S04A 2E5OA 4C26A 1XNEA 1WHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z0T A;  3IUW A;  1WK2 A;  2DP9 A;  2KKU A;  1TE7 A;  1S04 A;  2E5O A;  1XNE A; 
#chains in the Genus database with same CATH topology
 1K8W A;  1SQW A;  1ZBO A;  3IUW A;  3LWP A;  1IT8 A;  2Q07 A;  2B78 A;  1SGV A;  2CX0 A;  3M6W A;  3M4X A;  2AS0 A;  2J5V A;  3VSE A;  4CI2 B;  2RFK A;  2Z0T A;  2P38 A;  2DP9 A;  3LWQ A;  1ZS7 A;  4CI1 B;  3U28 A;  1ZE1 A;  2E5O A;  4DMG A;  2FRX A;  4Q1T A;  1XNE A;  3LWO A;  1WXW A;  2HVY A;  3HAX A;  3HJW A;  3M6U A;  3HJY A;  1WK2 A;  2CX1 A;  1TE7 A;  1S04 A;  2AB4 A;  3UAI A;  3LDF A;  1R3E A;  4CI3 B;  3MQK A;  3ZV0 C;  1R3F A;  3D79 A;  3M65 A;  1ZL3 A;  1WXX A;  2EY4 A;  1ZE2 A;  1T5Y A;  1Q7H A;  3LWV A;  3LJC A;  3LWR A;  2AUS A;  2ANE A;  2J5T A;  1IT7 A;  2CWW A;  2KKU A;  3C0K A;  4TZ4 C;  1IQ8 A;  1J2B A;  3M6V A;  3M6X A;  2APO A;  1UOY A; 
#chains in the Genus database with same CATH homology
 2Z0T A;  3IUW A;  1WK2 A;  2DP9 A;  4P78 C;  2KKU A;  1TE7 A;  1S04 A;  2E5O A;  4C26 A;  1XNE A;  1WHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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