1XOXA

Solution structure of human survivin
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
117
structure length
117
Chain Sequence
MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Apoptosis inhibitor survivin
publication title Solution structure of human survivin and its binding interface with smac/diablo
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00653 BIR Inhibitor of Apoptosis domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1170.10 Mainly Alpha Orthogonal Bundle Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 1xoxA00
2OPYA 2I3IA 1XB1A 4J45A 5C0LA 3UIKA 5C83A 2QRAA 4J3YA 4KJVA 4KMPA 3UEGA 2QFAA 5C84A 5C0KA 3SIQA 3D9TA 4OXCA 3UIIA 5C7DA 5C3KA 1I3OE 3UEIA 3SIPE 2POIA 3UEHA 1OY7A 3EYLA 4KJUA 3CM2A 4J48A 5C7AA 3UEEA 3GTAA 3UIHA 4J47A 2UVLA 1JD6A 4WVTA 1C9QA 1G3FA 3F7HA 3MUPA 4HY5A 4J44A 1SE0A 1E31A 1SDZA 1NW9A 3OZ1A 4WVSA 1OXQA 1OXNA 3G76A 4KMNA 2RAXA 1JD5A 4LGEA 1G73C 1XB0A 1TFTA 2VSLA 4A0JA 1TW6A 4MU7A 3GT9A 1F9XA 4HY0A 3M0AD 1QBHA 3UIJA 5C7BA 3D9UA 4HY4A 2RAWA 1F3HA 4J46A 1Q4QA 1JD4A 1XOXA 3F7GA 4MTZA 3UIGA 3M0DD 3T6PA 4LGUA 5C7CA 3F7IA 4A0NA 4MTIA 1TFQA 3CM7A 3UW5A 3UW4A 2POPB 4EB9A 2JK7A 2VM5A 1M4MA 4EC4A 3UEFA 3HL5A 3M1DA 2I3HA 4WVUA 3CLXA 2OPZA 5C3HA 4A0IA 3UEDA 3UECA
chains in the Genus database with same CATH superfamily
2OPYA 2I3IA 1XB1A 4J45A 5C0LA 3UIKA 5C83A 2QRAA 4J3YA 4KJVA 4KMPA 3UEGA 2QFAA 5C84A 5C0KA 3SIQA 3D9TA 4OXCA 3UIIA 5C7DA 5C3KA 1I3OE 3UEIA 3SIPE 2POIA 3UEHA 1OY7A 3EYLA 4KJUA 3CM2A 4J48A 5C7AA 3UEEA 3GTAA 3UIHA 4J47A 2UVLA 1JD6A 4WVTA 1C9QA 1G3FA 3F7HA 3MUPA 4HY5A 4J44A 1SE0A 1E31A 1SDZA 1NW9A 3OZ1A 4WVSA 1OXQA 1OXNA 3G76A 4KMNA 2RAXA 1JD5A 4LGEA 1G73C 1XB0A 1TFTA 2VSLA 4A0JA 1TW6A 4MU7A 3GT9A 1F9XA 4HY0A 3M0AD 1QBHA 3UIJA 5C7BA 3D9UA 4HY4A 2RAWA 1F3HA 4J46A 1Q4QA 1JD4A 1XOXA 3F7GA 4MTZA 3UIGA 3M0DD 3T6PA 4LGUA 5C7CA 3F7IA 4A0NA 4MTIA 1TFQA 3CM7A 3UW5A 3UW4A 2POPB 4EB9A 2JK7A 2VM5A 1M4MA 4EC4A 3UEFA 3HL5A 3M1DA 2I3HA 4WVUA 3CLXA 2OPZA 5C3HA 4A0IA 3UEDA 3UECA
chains in the Genus database with same CATH topology
2OPYA 2I3IA 1XB1A 4J45A 5C0LA 3UIKA 5C83A 2QRAA 4J3YA 4KJVA 4KMPA 3UEGA 2QFAA 5C84A 5C0KA 3SIQA 3D9TA 4OXCA 3UIIA 5C7DA 5C3KA 1I3OE 3UEIA 3SIPE 2POIA 3UEHA 1OY7A 3EYLA 4KJUA 3CM2A 4J48A 5C7AA 3UEEA 3GTAA 3UIHA 4J47A 2UVLA 1JD6A 4WVTA 1C9QA 1G3FA 3F7HA 3MUPA 4HY5A 4J44A 1SE0A 1E31A 1SDZA 1NW9A 3OZ1A 4WVSA 1OXQA 1OXNA 3G76A 4KMNA 2RAXA 1JD5A 4LGEA 1G73C 1XB0A 1TFTA 2VSLA 4A0JA 1TW6A 4MU7A 3GT9A 1F9XA 4HY0A 3M0AD 1QBHA 3UIJA 5C7BA 3D9UA 4HY4A 2RAWA 1F3HA 4J46A 1Q4QA 1JD4A 1XOXA 3F7GA 4MTZA 3UIGA 3M0DD 3T6PA 4LGUA 5C7CA 3F7IA 4A0NA 4MTIA 1TFQA 3CM7A 3UW5A 3UW4A 2POPB 4EB9A 2JK7A 2VM5A 1M4MA 4EC4A 3UEFA 3HL5A 3M1DA 2I3HA 4WVUA 3CLXA 2OPZA 5C3HA 4A0IA 3UEDA 3UECA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OPY A;  2I3I A;  1XB1 A;  4J45 A;  5C0L A;  3UIK A;  5C83 A;  2QRA A;  4J3Y A;  4KJV A;  4KMP A;  3UEG A;  2QFA A;  5C84 A;  5C0K A;  3SIQ A;  3D9T A;  4OXC A;  3UII A;  5C7D A;  5C3K A;  1I3O E;  3UEI A;  3SIP E;  2POI A;  3UEH A;  1OY7 A;  3EYL A;  4KJU A;  3CM2 A;  4J48 A;  5C7A A;  3UEE A;  3GTA A;  3UIH A;  4J47 A;  2UVL A;  1JD6 A;  4WVT A;  1C9Q A;  1G3F A;  3F7H A;  3MUP A;  4HY5 A;  4J44 A;  1SE0 A;  1E31 A;  1SDZ A;  1NW9 A;  3OZ1 A;  4WVS A;  1OXQ A;  1OXN A;  3G76 A;  4KMN A;  2RAX A;  1JD5 A;  4LGE A;  1G73 C;  1XB0 A;  1TFT A;  2VSL A;  4A0J A;  1TW6 A;  4MU7 A;  3GT9 A;  1F9X A;  4HY0 A;  3M0A D;  1QBH A;  3UIJ A;  5C7B A;  3D9U A;  4HY4 A;  2RAW A;  1F3H A;  4J46 A;  1Q4Q A;  1JD4 A;  1XOX A;  3F7G A;  4MTZ A;  3UIG A;  3M0D D;  3T6P A;  4LGU A;  5C7C A;  3F7I A;  4A0N A;  4MTI A;  1TFQ A;  3CM7 A;  3UW5 A;  3UW4 A;  2POP B;  4EB9 A;  2JK7 A;  2VM5 A;  1M4M A;  4EC4 A;  3UEF A;  3HL5 A;  3M1D A;  2I3H A;  4WVU A;  3CLX A;  2OPZ A;  5C3H A;  4A0I A;  3UED A;  3UEC A; 
#chains in the Genus database with same CATH topology
 2OPY A;  2I3I A;  1XB1 A;  4J45 A;  5C0L A;  3UIK A;  5C83 A;  2QRA A;  4J3Y A;  4KJV A;  4KMP A;  3UEG A;  2QFA A;  5C84 A;  5C0K A;  3SIQ A;  3D9T A;  4OXC A;  3UII A;  5C7D A;  5C3K A;  1I3O E;  3UEI A;  3SIP E;  2POI A;  3UEH A;  1OY7 A;  3EYL A;  4KJU A;  3CM2 A;  4J48 A;  5C7A A;  3UEE A;  3GTA A;  3UIH A;  4J47 A;  2UVL A;  1JD6 A;  4WVT A;  1C9Q A;  1G3F A;  3F7H A;  3MUP A;  4HY5 A;  4J44 A;  1SE0 A;  1E31 A;  1SDZ A;  1NW9 A;  3OZ1 A;  4WVS A;  1OXQ A;  1OXN A;  3G76 A;  4KMN A;  2RAX A;  1JD5 A;  4LGE A;  1G73 C;  1XB0 A;  1TFT A;  2VSL A;  4A0J A;  1TW6 A;  4MU7 A;  3GT9 A;  1F9X A;  4HY0 A;  3M0A D;  1QBH A;  3UIJ A;  5C7B A;  3D9U A;  4HY4 A;  2RAW A;  1F3H A;  4J46 A;  1Q4Q A;  1JD4 A;  1XOX A;  3F7G A;  4MTZ A;  3UIG A;  3M0D D;  3T6P A;  4LGU A;  5C7C A;  3F7I A;  4A0N A;  4MTI A;  1TFQ A;  3CM7 A;  3UW5 A;  3UW4 A;  2POP B;  4EB9 A;  2JK7 A;  2VM5 A;  1M4M A;  4EC4 A;  3UEF A;  3HL5 A;  3M1D A;  2I3H A;  4WVU A;  3CLX A;  2OPZ A;  5C3H A;  4A0I A;  3UED A;  3UEC A; 
#chains in the Genus database with same CATH homology
 2OPY A;  2I3I A;  1XB1 A;  4J45 A;  5C0L A;  3UIK A;  5C83 A;  2QRA A;  4J3Y A;  4KJV A;  4KMP A;  3UEG A;  2QFA A;  5C84 A;  5C0K A;  3SIQ A;  3D9T A;  4OXC A;  3UII A;  5C7D A;  5C3K A;  1I3O E;  3UEI A;  3SIP E;  2POI A;  3UEH A;  1OY7 A;  3EYL A;  4KJU A;  3CM2 A;  4J48 A;  5C7A A;  3UEE A;  3GTA A;  3UIH A;  4J47 A;  2UVL A;  1JD6 A;  4WVT A;  1C9Q A;  1G3F A;  3F7H A;  3MUP A;  4HY5 A;  4J44 A;  1SE0 A;  1E31 A;  1SDZ A;  1NW9 A;  3OZ1 A;  4WVS A;  1OXQ A;  1OXN A;  3G76 A;  4KMN A;  2RAX A;  1JD5 A;  4LGE A;  1G73 C;  1XB0 A;  1TFT A;  2VSL A;  4A0J A;  1TW6 A;  4MU7 A;  3GT9 A;  1F9X A;  4HY0 A;  3M0A D;  1QBH A;  3UIJ A;  5C7B A;  3D9U A;  4HY4 A;  2RAW A;  1F3H A;  4J46 A;  1Q4Q A;  1JD4 A;  1XOX A;  3F7G A;  4MTZ A;  3UIG A;  3M0D D;  3T6P A;  4LGU A;  5C7C A;  3F7I A;  4A0N A;  4MTI A;  1TFQ A;  3CM7 A;  3UW5 A;  3UW4 A;  2POP B;  4EB9 A;  2JK7 A;  2VM5 A;  1M4M A;  4EC4 A;  3UEF A;  3HL5 A;  3M1D A;  2I3H A;  4WVU A;  3CLX A;  2OPZ A;  5C3H A;  4A0I A;  3UED A;  3UEC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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