1XT0B

The structure of n-terminal sec7 domain of ralf
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
203
structure length
203
Chain Sequence
GASHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords guanine nucleotide exchange protein
publication title The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site
pubmed doi rcsb
source organism Legionella pneumophila
total genus 73
structure length 203
sequence length 203
ec nomenclature
pdb deposition date 2004-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1xt0B01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 1xt0B02
1R8QE 1XSZA 4C0AA 4C7PA 1PBVA 4JMIA 1RE0B 4Z21A 2R09A 4JWLA 4JMOA 4A4PA 4L5MA 1BC9A 4JXHA 2R0DA 3L8NA 1R8SE 4D7QA 1R8ME 1S9DE 4D7RA 1KU1A 1XT0B 3LTLA 3SWVA 4OIYA
chains in the Genus database with same CATH superfamily
1R8QE 1AVRA 4C0AA 1PBVA 1A8BA 4JMIA 1RE0B 2R09A 2XO3A 1HM6A 2H0MA 3ABOA 2H0LA 1AEIA 1R8SE 1BCZA 1N41A 4D7RA 1YJ0A 1XT0B 1R4AE 2HSNA 1C1KA 1AOWA 1LKVX 4MDVA 4KN7X 3HJLA 1Q8DA 2OY9A 1W3WA 1A8AA 4OIYA 1BO9A 1W45A 4C7PA 1YCNA 1HVEA 2ZHJA 4JMOA 1BC9A 1HAKA 1YIIA 4JXHA 3USYA 1W7BA 2VXGA 3L8NA 4KMUX 3TW5A 1BC1A 1S9DE 1AXNA 3USWA 1AVCA 1HVFA 1M9IA 2ZHIA 4EVHA 4JK1X 1N44A 2IE7A 2ZOCA 3SOHB 4EVFA 2II2A 1MCXA 1BCWA 1DK5A 2IE6A 3BRXA 2IICA 2H0KA 4JWLA 1ANXA 4L5MA 2RANA 1ANNA 1BC3A 1N42A 1QC7A 4FHRB 1KU1A 1DM5A 3LTLA 1YGMA 1N00A 1UPTB 4MDUA 3ABRA 1AIIA 1G5NA 1XSZA 2QEZA 4Z21A 4A4PA 3ABSA 4HREA 1XJLA 3ANYA 2XO2A 1ALAA 2R0DA 4FQ0C 4X9PA 4D7QA 1SAVA 2HYVA 1R8ME 2K6XA 2Q4CA 1I4AA 1BCYA 1HVDA 1HVGA 3ABQA 1ANWA 2HYUA 3AJCA 4KN4X 1BC0A 2HYWA 4Q2SA 3AO0A 1AVHA 3SWVA
chains in the Genus database with same CATH topology
1R8QE 1XSZA 4C0AA 4C7PA 1PBVA 4JMIA 1RE0B 4Z21A 2R09A 4JMOA 4JWLA 4A4PA 4L5MA 1BC9A 4JXHA 3USYA 2R0DA 1QC7A 3L8NA 4FQ0C 1R8SE 4KMUX 3TW5A 4D7QA 4FHRB 1R8ME 2K6XA 1S9DE 4D7RA 3USWA 1KU1A 1XT0B 2HSNA 3LTLA 1LKVX 3AJCA 4JK1X 4KN4X 4KN7X 3HJLA 1Q8DA 3SOHB 3SWVA 4OIYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R8Q E;  1XSZ A;  4C0A A;  4C7P A;  1PBV A;  4JMI A;  1RE0 B;  4Z21 A;  2R09 A;  4JWL A;  4JMO A;  4A4P A;  4L5M A;  1BC9 A;  4JXH A;  2R0D A;  3L8N A;  1R8S E;  4D7Q A;  1R8M E;  1S9D E;  4D7R A;  1KU1 A;  1XT0 B;  3LTL A;  3SWV A;  4OIY A; 
#chains in the Genus database with same CATH topology
 1R8Q E;  1AVR A;  4C0A A;  1PBV A;  1A8B A;  4JMI A;  1RE0 B;  2R09 A;  2XO3 A;  1HM6 A;  2H0M A;  3ABO A;  2H0L A;  1AEI A;  1R8S E;  1BCZ A;  1N41 A;  4D7R A;  1YJ0 A;  1XT0 B;  1R4A E;  2HSN A;  1C1K A;  1AOW A;  1LKV X;  4MDV A;  4KN7 X;  3HJL A;  1Q8D A;  2OY9 A;  1W3W A;  1A8A A;  4OIY A;  1BO9 A;  1W45 A;  4C7P A;  1YCN A;  1HVE A;  2ZHJ A;  4JMO A;  1BC9 A;  1HAK A;  1YII A;  4JXH A;  3USY A;  1W7B A;  2VXG A;  3L8N A;  4KMU X;  3TW5 A;  1BC1 A;  1S9D E;  1AXN A;  3USW A;  1AVC A;  1HVF A;  1M9I A;  2ZHI A;  4EVH A;  4JK1 X;  1N44 A;  2IE7 A;  2ZOC A;  3SOH B;  4EVF A;  2II2 A;  1MCX A;  1BCW A;  1DK5 A;  2IE6 A;  3BRX A;  2IIC A;  2H0K A;  4JWL A;  1ANX A;  4L5M A;  2RAN A;  1ANN A;  1BC3 A;  1N42 A;  1QC7 A;  4FHR B;  1KU1 A;  1DM5 A;  3LTL A;  1YGM A;  1N00 A;  1UPT B;  4MDU A;  3ABR A;  1AII A;  1G5N A;  1XSZ A;  2QEZ A;  4Z21 A;  4A4P A;  3ABS A;  4HRE A;  1XJL A;  3ANY A;  2XO2 A;  1ALA A;  2R0D A;  4FQ0 C;  4X9P A;  4D7Q A;  1SAV A;  2HYV A;  1R8M E;  2K6X A;  2Q4C A;  1I4A A;  1BCY A;  1HVD A;  1HVG A;  3ABQ A;  1ANW A;  2HYU A;  3AJC A;  4KN4 X;  1BC0 A;  2HYW A;  4Q2S A;  3AO0 A;  1AVH A;  3SWV A; 
#chains in the Genus database with same CATH homology
 1R8Q E;  1XSZ A;  4C0A A;  4C7P A;  1PBV A;  4JMI A;  1RE0 B;  4Z21 A;  2R09 A;  4JMO A;  4JWL A;  4A4P A;  4L5M A;  1BC9 A;  4JXH A;  3USY A;  2R0D A;  1QC7 A;  3L8N A;  4FQ0 C;  1R8S E;  4KMU X;  3TW5 A;  4D7Q A;  4FHR B;  1R8M E;  2K6X A;  1S9D E;  4D7R A;  3USW A;  1KU1 A;  1XT0 B;  2HSN A;  3LTL A;  1LKV X;  3AJC A;  4JK1 X;  4KN4 X;  4KN7 X;  3HJL A;  1Q8D A;  3SOH B;  3SWV A;  4OIY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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