1XUAA

Structure and function of the phenazine biosynthetic protein phzf from pseudomonas fluorescens
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Biosynthetic protein
molecule keywords Phenazine biosynthesis protein phzF
total genus 81
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1xuaA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1xuaA01
4J9WA 3EDNA 5HA4A 4IK0A 2Q9HA 4JCIA 4J9XA 4Q60A 2H9FA 2GKJA 4K8LA 3EJXA 3G7KA 1W62A 1U1WA 1U1XA 1W61A 4K7GB 2GKEA 5H2GA 5M47A 1XUBA 4K7XA 1QYAA 1GQZA 1U0KA 1S7JA 1XUAA 1U1VA 4IJZA 4JUUA 2PVZA 1YM5A 2OTNA 3EKMA 4DUNA 2Q9JA 5IWEA 2PW0A 1BWZA 1QY9A 1T6KA 4JD7A 1SDJA 2AZPA 4JBDA 4LB0A 1TM0A 4Q2HA 3FVEA 5H2YA
chains in the Genus database with same CATH superfamily
2IW4A 2MPBA 2HAWA 3G7KA 5M47A 1XUAA 2KW7A 4LG3A 3WQZA 2PW0A 3PW9A 4OA3A 2LT2A 2ZXOA 5H2YA 1WPPA 3EDNA 5HA4A 2Q9HA 2YMAA 4Q60A 1K20A 4K8LA 3PTJA 1U1WA 1U1XA 2GKEA 5ANPA 1GQZA 1QYAA 1U0KA 1S7JA 4JUUA 1YM5A 4RPAA 3ICJA 1SDJA 1WPMA 4LS9A 2ENXA 3FVEA 1K23A 2QB8A 4IK0A 4JCIA 2H9FA 1IR6A 1W61A 5H2GA 3G98A 1XUBA 4K7XA 2QB7A 2OTNA 2QB6A 3PVHA 4DUNA 2EB0A 4JD7A 2AZPA 4LB0A 1TM0A 4Q2HA 4J9WA 4GL6A 2ZXPA 2KPTA 4J9XA 4PY9A 1I74A 2GKJA 3EJXA 2ZXRA 1W62A 4K7GB 3DEVA 3IGHX 1U1VA 4IJZA 2PVZA 3EKMA 5IWEA 2Q9JA 1BWZA 1QY9A 1T6KA 3W5WA 4JBDA 2ZVFA
chains in the Genus database with same CATH topology
2IW4A 2MPBA 2HAWA 3G7KA 5M47A 1XUAA 2KW7A 4LG3A 3WQZA 2PW0A 3PW9A 4OA3A 2LT2A 2ZXOA 5H2YA 1WPPA 3EDNA 5HA4A 2Q9HA 2YMAA 4Q60A 1K20A 4K8LA 3PTJA 1U1WA 1U1XA 2GKEA 5ANPA 1GQZA 1QYAA 1U0KA 1S7JA 4JUUA 1YM5A 4RPAA 3ICJA 1SDJA 1WPMA 4LS9A 2ENXA 3FVEA 1K23A 2QB8A 4IK0A 4JCIA 2H9FA 1IR6A 1W61A 5H2GA 3G98A 1XUBA 4K7XA 2QB7A 2OTNA 2QB6A 3PVHA 4DUNA 2EB0A 4JD7A 2AZPA 4LB0A 1TM0A 4Q2HA 4J9WA 4GL6A 2ZXPA 2KPTA 4J9XA 4PY9A 1I74A 2GKJA 3EJXA 2ZXRA 1W62A 4K7GB 3DEVA 3IGHX 1U1VA 4IJZA 2PVZA 3EKMA 5IWEA 2Q9JA 1BWZA 1QY9A 1T6KA 3W5WA 4JBDA 2ZVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J9W A;  3EDN A;  5HA4 A;  4IK0 A;  2Q9H A;  4JCI A;  4J9X A;  4Q60 A;  2H9F A;  2GKJ A;  4K8L A;  3EJX A;  3G7K A;  1W62 A;  1U1W A;  1U1X A;  1W61 A;  4K7G B;  2GKE A;  5H2G A;  5M47 A;  1XUB A;  4K7X A;  1QYA A;  1GQZ A;  1U0K A;  1S7J A;  1XUA A;  1U1V A;  4IJZ A;  4JUU A;  2PVZ A;  1YM5 A;  2OTN A;  3EKM A;  4DUN A;  2Q9J A;  5IWE A;  2PW0 A;  1BWZ A;  1QY9 A;  1T6K A;  4JD7 A;  1SDJ A;  2AZP A;  4JBD A;  4LB0 A;  1TM0 A;  4Q2H A;  3FVE A;  5H2Y A; 
#chains in the Genus database with same CATH topology
 2IW4 A;  2MPB A;  2HAW A;  3G7K A;  5M47 A;  1XUA A;  2KW7 A;  4LG3 A;  3WQZ A;  2PW0 A;  3PW9 A;  4OA3 A;  2LT2 A;  2ZXO A;  5H2Y A;  1WPP A;  3EDN A;  5HA4 A;  2Q9H A;  2YMA A;  4Q60 A;  1K20 A;  4K8L A;  3PTJ A;  1U1W A;  1U1X A;  2GKE A;  5ANP A;  1GQZ A;  1QYA A;  1U0K A;  1S7J A;  4JUU A;  1YM5 A;  4RPA A;  3ICJ A;  1SDJ A;  1WPM A;  4LS9 A;  2ENX A;  3FVE A;  1K23 A;  2QB8 A;  4IK0 A;  4JCI A;  2H9F A;  1IR6 A;  1W61 A;  5H2G A;  3G98 A;  1XUB A;  4K7X A;  2QB7 A;  2OTN A;  2QB6 A;  3PVH A;  4DUN A;  2EB0 A;  4JD7 A;  2AZP A;  4LB0 A;  1TM0 A;  4Q2H A;  4J9W A;  4GL6 A;  2ZXP A;  2KPT A;  4J9X A;  4PY9 A;  1I74 A;  2GKJ A;  3EJX A;  2ZXR A;  1W62 A;  4K7G B;  3DEV A;  3IGH X;  1U1V A;  4IJZ A;  2PVZ A;  3EKM A;  5IWE A;  2Q9J A;  1BWZ A;  1QY9 A;  1T6K A;  3W5W A;  4JBD A;  2ZVF A; 
#chains in the Genus database with same CATH homology
 2IW4 A;  2MPB A;  2HAW A;  3G7K A;  5M47 A;  1XUA A;  2KW7 A;  4LG3 A;  3WQZ A;  2PW0 A;  3PW9 A;  4OA3 A;  2LT2 A;  2ZXO A;  5H2Y A;  1WPP A;  3EDN A;  5HA4 A;  2Q9H A;  2YMA A;  4Q60 A;  1K20 A;  4K8L A;  3PTJ A;  1U1W A;  1U1X A;  2GKE A;  5ANP A;  1GQZ A;  1QYA A;  1U0K A;  1S7J A;  4JUU A;  1YM5 A;  4RPA A;  3ICJ A;  1SDJ A;  1WPM A;  4LS9 A;  2ENX A;  3FVE A;  1K23 A;  2QB8 A;  4IK0 A;  4JCI A;  2H9F A;  1IR6 A;  1W61 A;  5H2G A;  3G98 A;  1XUB A;  4K7X A;  2QB7 A;  2OTN A;  2QB6 A;  3PVH A;  4DUN A;  2EB0 A;  4JD7 A;  2AZP A;  4LB0 A;  1TM0 A;  4Q2H A;  4J9W A;  4GL6 A;  2ZXP A;  2KPT A;  4J9X A;  4PY9 A;  1I74 A;  2GKJ A;  3EJX A;  2ZXR A;  1W62 A;  4K7G B;  3DEV A;  3IGH X;  1U1V A;  4IJZ A;  2PVZ A;  3EKM A;  5IWE A;  2Q9J A;  1BWZ A;  1QY9 A;  1T6K A;  3W5W A;  4JBD A;  2ZVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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