1XUBA

Structure and function of the phenazine biosynthetic protein phzf from pseudomonas fluorescens
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGAPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Biosynthetic protein
molecule keywords Phenazine biosynthesis protein phzF
total genus 75
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1xubA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1xubA01
2GKJA 3EJXA 2AZPA 2Q9HA 4IK0A 4JUUA 2PVZA 1XUBA 4LB0A 1S7JA 2OTNA 4J9WA 4K7XA 5H2GA 1U0KA 1BWZA 4K8LA 4Q2HA 5H2YA 1U1XA 3EDNA 5M47A 1GQZA 1XUAA 4IJZA 4JBDA 4K7GB 2H9FA 1TM0A 4JD7A 5HA4A 1U1WA 1YM5A 1U1VA 2PW0A 4DUNA 1W62A 2GKEA 3EKMA 1QYAA 4Q60A 1QY9A 3G7KA 2Q9JA 1SDJA 4JCIA 5IWEA 1W61A 3FVEA 4J9XA 1T6KA
chains in the Genus database with same CATH superfamily
2LT2A 2AZPA 2HAWA 4JUUA 1XUBA 1S7JA 2OTNA 3G98A 4GL6A 3IGHX 5H2GA 1BWZA 1K20A 4Q2HA 5ANPA 1U1XA 2IW4A 1TM0A 5HA4A 1U1WA 2PW0A 4DUNA 4PY9A 2GKEA 3EKMA 3ICJA 1WPPA 1QY9A 2ZXRA 2ZVFA 4K7GB 3DEVA 2ZXOA 3W5WA 2Q9HA 2PVZA 1U0KA 1GQZA 2QB7A 1K23A 1XUAA 1YM5A 1U1VA 3PTJA 2QB6A 1QYAA 3G7KA 2YMAA 4JCIA 4LB0A 4J9WA 3PW9A 2QB8A 5H2YA 5M47A 4JBDA 2H9FA 4JD7A 3WQZA 2KW7A 2ZXPA 4RPAA 1W62A 4LG3A 1SDJA 1W61A 3FVEA 1T6KA 2GKJA 3PVHA 3EJXA 4IK0A 2KPTA 4K7XA 4K8LA 3EDNA 4LS9A 1I74A 2EB0A 4IJZA 1WPMA 4OA3A 2ENXA 4Q60A 1IR6A 2Q9JA 5IWEA 2MPBA 4J9XA
chains in the Genus database with same CATH topology
2LT2A 2AZPA 2HAWA 4JUUA 1XUBA 1S7JA 2OTNA 3G98A 4GL6A 3IGHX 5H2GA 1BWZA 1K20A 4Q2HA 5ANPA 1U1XA 2IW4A 1TM0A 5HA4A 1U1WA 2PW0A 4DUNA 4PY9A 2GKEA 3EKMA 3ICJA 1WPPA 1QY9A 2ZXRA 2ZVFA 4K7GB 3DEVA 2ZXOA 3W5WA 2Q9HA 2PVZA 1U0KA 1GQZA 2QB7A 1K23A 1XUAA 1YM5A 1U1VA 3PTJA 2QB6A 1QYAA 3G7KA 2YMAA 4JCIA 4LB0A 4J9WA 3PW9A 2QB8A 5H2YA 5M47A 4JBDA 2H9FA 4JD7A 3WQZA 2KW7A 2ZXPA 4RPAA 1W62A 4LG3A 1SDJA 1W61A 3FVEA 1T6KA 2GKJA 3PVHA 3EJXA 4IK0A 2KPTA 4K7XA 4K8LA 3EDNA 4LS9A 1I74A 2EB0A 4IJZA 1WPMA 4OA3A 2ENXA 4Q60A 1IR6A 2Q9JA 5IWEA 2MPBA 4J9XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GKJ A;  3EJX A;  2AZP A;  2Q9H A;  4IK0 A;  4JUU A;  2PVZ A;  1XUB A;  4LB0 A;  1S7J A;  2OTN A;  4J9W A;  4K7X A;  5H2G A;  1U0K A;  1BWZ A;  4K8L A;  4Q2H A;  5H2Y A;  1U1X A;  3EDN A;  5M47 A;  1GQZ A;  1XUA A;  4IJZ A;  4JBD A;  4K7G B;  2H9F A;  1TM0 A;  4JD7 A;  5HA4 A;  1U1W A;  1YM5 A;  1U1V A;  2PW0 A;  4DUN A;  1W62 A;  2GKE A;  3EKM A;  1QYA A;  4Q60 A;  1QY9 A;  3G7K A;  2Q9J A;  1SDJ A;  4JCI A;  5IWE A;  1W61 A;  3FVE A;  4J9X A;  1T6K A; 
#chains in the Genus database with same CATH topology
 2LT2 A;  2AZP A;  2HAW A;  4JUU A;  1XUB A;  1S7J A;  2OTN A;  3G98 A;  4GL6 A;  3IGH X;  5H2G A;  1BWZ A;  1K20 A;  4Q2H A;  5ANP A;  1U1X A;  2IW4 A;  1TM0 A;  5HA4 A;  1U1W A;  2PW0 A;  4DUN A;  4PY9 A;  2GKE A;  3EKM A;  3ICJ A;  1WPP A;  1QY9 A;  2ZXR A;  2ZVF A;  4K7G B;  3DEV A;  2ZXO A;  3W5W A;  2Q9H A;  2PVZ A;  1U0K A;  1GQZ A;  2QB7 A;  1K23 A;  1XUA A;  1YM5 A;  1U1V A;  3PTJ A;  2QB6 A;  1QYA A;  3G7K A;  2YMA A;  4JCI A;  4LB0 A;  4J9W A;  3PW9 A;  2QB8 A;  5H2Y A;  5M47 A;  4JBD A;  2H9F A;  4JD7 A;  3WQZ A;  2KW7 A;  2ZXP A;  4RPA A;  1W62 A;  4LG3 A;  1SDJ A;  1W61 A;  3FVE A;  1T6K A;  2GKJ A;  3PVH A;  3EJX A;  4IK0 A;  2KPT A;  4K7X A;  4K8L A;  3EDN A;  4LS9 A;  1I74 A;  2EB0 A;  4IJZ A;  1WPM A;  4OA3 A;  2ENX A;  4Q60 A;  1IR6 A;  2Q9J A;  5IWE A;  2MPB A;  4J9X A; 
#chains in the Genus database with same CATH homology
 2LT2 A;  2AZP A;  2HAW A;  4JUU A;  1XUB A;  1S7J A;  2OTN A;  3G98 A;  4GL6 A;  3IGH X;  5H2G A;  1BWZ A;  1K20 A;  4Q2H A;  5ANP A;  1U1X A;  2IW4 A;  1TM0 A;  5HA4 A;  1U1W A;  2PW0 A;  4DUN A;  4PY9 A;  2GKE A;  3EKM A;  3ICJ A;  1WPP A;  1QY9 A;  2ZXR A;  2ZVF A;  4K7G B;  3DEV A;  2ZXO A;  3W5W A;  2Q9H A;  2PVZ A;  1U0K A;  1GQZ A;  2QB7 A;  1K23 A;  1XUA A;  1YM5 A;  1U1V A;  3PTJ A;  2QB6 A;  1QYA A;  3G7K A;  2YMA A;  4JCI A;  4LB0 A;  4J9W A;  3PW9 A;  2QB8 A;  5H2Y A;  5M47 A;  4JBD A;  2H9F A;  4JD7 A;  3WQZ A;  2KW7 A;  2ZXP A;  4RPA A;  1W62 A;  4LG3 A;  1SDJ A;  1W61 A;  3FVE A;  1T6K A;  2GKJ A;  3PVH A;  3EJX A;  4IK0 A;  2KPT A;  4K7X A;  4K8L A;  3EDN A;  4LS9 A;  1I74 A;  2EB0 A;  4IJZ A;  1WPM A;  4OA3 A;  2ENX A;  4Q60 A;  1IR6 A;  2Q9J A;  5IWE A;  2MPB A;  4J9X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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