1XVDE

Soluble methane monooxygenase hydroxylase: 4-fluorophenol soaked structure
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methane monooxygenase component A alpha chain
publication title Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath): Protein Motion in the Alpha-Subunit
pubmed doi rcsb
total genus 61
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2004-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvdE01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvdE02
1FZ6E 1XU5E 1MTYG 1XU3E 1XVEE 1XVDE 1XVBE 1FZ3E 1FZ9E 1XVGE 4GAMC 1FZ5E 1FZ2E 1XVFE 1MHYG 1FZ1E 1XMHE 1FYZE 1XMGE 1XMFE 1FZ4E 1FZ7E 1FZIE 1FZ0E 1FZHE 1FZ8E 1MHZG 1XVCE 1MMOG
chains in the Genus database with same CATH superfamily
3J2PA 2JHPA 4DTXA 4J2BA 3L2OB 4KHWA 5H37A 4M3TA 3L8BA 2YB5A 3HGKE 3LZIA 1XU5E 2OZMA 3HP9A 1XU3E 3TJYA 2OYQA 2MMBA 4HCCA 1LDKE 4FJXA 3TAGA 1P22A 4B08A 3V7DB 4ADNA 4FJHA 3TABA 3NE6A 4DTNA 4DTUA 4E4BA 3RMCA 3RMAA 3QEXA 2VJ5A 2P5GA 4GAMC 4EYWA 1FXXA 1MHYG 2OVPB 2P1PB 4DU1A 4FJMA 1FZ1E 1XL3C 3QNOA 3QEPA 3SPYA 3SJJA 4KHNA 4ADOA 4J2AA 4KI4A 4M3ZA 4M3RA 3NAEA 3WSOA 2JH8A 3NCIA 3N1BA 1XMFE 2JH9A 1WAJA 1FZ4E 3LD8A 4FJ8A 1FZ7E 4FJ9A 2FYOA 1XVCE 1MMOG 1Q9YA 3E4YA 4FK4A 3CFOA 4DU3A 2HD0A 4M45A 3LDSA 4I6JB 4DTOA 4DTPA 4JS5A 4X5NA 3TL8B 1XVEE 1XVDE 3HL8A 1XVBE 3NDKA 4X5MA 4JRPA 1FZ3E 1FZ9E 3L0MA 4JS4A 3RMDA 4DTJA 3C6NB 3OGKB 4RNGA 4KHUA 3SNNA 4FJ7A 2LF6A 4FJNA 3NGIA 2MW2A 2PFTA 2ATQA 1XMHE 3S9HA 2K5SA 3SQ4A 3SUQA 3QETA 1XMGE 2E31A 2DY4A 3CFPA 1FZ0E 1FZ8E 4FVMA 3BVOA 2H4TA 4J2DA 1FS1A 2E32A 3KD5E 3QEVA 2OZSA 4FJ5A 2VIXA 2DEBA 2JHAA 2RKHA 4M3XA 3NHGA 1NEXB 3CQ8A 4E3SA 1IH7A 4IT5A 3C6OB 3QNNA 3SQ2A 3SPZA 2PFVA 3RWUA 4M3YA 1N1CA 3QEWA 1Q9XA 4M3WA 3N1EA 2QXFA 3C95A 2OVQB 3LZJA 1XVGE 4DTSA 3QEIA 3SQ1A 4QNCA 1FZ5E 4DTRA 1XVFE 4DTMA 4FJIA 3SVIA 3OGLB 3SUPA 3QESA 3J27A 2RCUA 3HGLA 4QNDA 1IG9A 1WAFA 3MKSB 3E4WA 2P1NB 2B7MA 2OVRB 3C6PB 4FJJA 4HCBA 4AI6A 1FZHE 4KHSA 1MHZG 2DTUA 3TAFA 3SI6A 3C94A 3KD1E 3TAEA 4M3UA 3QERA 3UIQA 4J2EA 2JQTA 1FZ6E 1JW2A 5IBKB 2B8IA 1MTYG 2JPNA 4I9LA 3UO2A 4KI6A 3RMBA 4KHQA 4ICGC 2P1OB 2FW3A 4I9QA 4FJLA 3SCXA 4EPHA 3OGMB 3L1NA 4AKGA 4M41A 2LF3A 4DU4A 3SQ0A 4RL5A 3SUNA 2P1QB 3UO3A 2MZWB 4FJGA 1FPOA 2P5OA 5IREA 5IZ7A 4M42A 1FZ2E 4FJKA 4AKIA 2B1EA 4JRQA 4EP9A 3CFRA 4FK0A 1FYZE 1CLQA 2P1MB 4KHYA 3LDBA 3SUOA 2JHCA 1FZIE 2VJ4A 3K2OA 4FK2A 4RG8A 4AKHA
chains in the Genus database with same CATH topology
3J2PA 2JHPA 4DTXA 4J2BA 3L2OB 4KHWA 5H37A 4M3TA 3L8BA 2YB5A 3HGKE 3LZIA 1XU5E 2OZMA 3HP9A 1XU3E 3TJYA 2OYQA 2MMBA 4HCCA 1LDKE 4FJXA 3TAGA 1P22A 4B08A 3V7DB 4ADNA 4FJHA 3TABA 3NE6A 4DTNA 4DTUA 4E4BA 3RMCA 3RMAA 3QEXA 2VJ5A 2P5GA 4GAMC 4EYWA 1FXXA 1MHYG 2OVPB 2P1PB 4DU1A 4FJMA 1FZ1E 1XL3C 3QNOA 3QEPA 3SPYA 3SJJA 4KHNA 4ADOA 4J2AA 4KI4A 4M3ZA 4M3RA 3NAEA 3WSOA 2JH8A 3NCIA 3N1BA 1XMFE 2JH9A 1WAJA 1FZ4E 3LD8A 4FJ8A 1FZ7E 4FJ9A 2FYOA 1XVCE 1MMOG 1Q9YA 3E4YA 4FK4A 3CFOA 4DU3A 2HD0A 4M45A 3LDSA 4I6JB 4DTOA 4DTPA 4JS5A 4X5NA 3TL8B 1XVEE 1XVDE 3HL8A 1XVBE 3NDKA 4X5MA 4JRPA 1FZ3E 1FZ9E 3L0MA 4JS4A 3RMDA 4DTJA 3C6NB 3OGKB 4RNGA 4KHUA 3SNNA 4FJ7A 2LF6A 4FJNA 3NGIA 2PFTA 2ATQA 1XMHE 3S9HA 3SQ4A 3SUQA 3QETA 1XMGE 2E31A 2DY4A 3CFPA 1FZ0E 1FZ8E 4FVMA 2H4TA 4J2DA 1FS1A 2E32A 3KD5E 3QEVA 2OZSA 4FJ5A 2VIXA 2DEBA 2JHAA 4M3XA 3NHGA 1NEXB 3CQ8A 4E3SA 1IH7A 3C6OB 3QNNA 3SQ2A 3SPZA 2PFVA 3RWUA 4M3YA 1Q9XA 3QEWA 4M3WA 3N1EA 2QXFA 3C95A 2OVQB 3LZJA 1XVGE 4DTSA 3QEIA 3SQ1A 4QNCA 1FZ5E 4DTRA 1XVFE 4DTMA 4FJIA 3SVIA 3OGLB 3SUPA 3QESA 3J27A 2RCUA 3HGLA 4QNDA 1IG9A 1WAFA 3MKSB 3E4WA 3C6PB 2P1NB 2B7MA 2OVRB 4FJJA 4HCBA 4AI6A 1FZHE 4KHSA 1MHZG 2DTUA 3TAFA 3SI6A 3C94A 3KD1E 3TAEA 4M3UA 3QERA 3UIQA 4J2EA 1FZ6E 5IBKB 2B8IA 1MTYG 2JPNA 4I9LA 4KI6A 4KHQA 3RMBA 2P1OB 2FW3A 4I9QA 4FJLA 3SCXA 4EPHA 3OGMB 3L1NA 4AKGA 4M41A 2LF3A 4DU4A 3SQ0A 4RL5A 3SUNA 2P1QB 2MZWB 4FJGA 2P5OA 5IREA 5IZ7A 4M42A 1FZ2E 4FJKA 4AKIA 2B1EA 4JRQA 4EP9A 3CFRA 4FK0A 1FYZE 1CLQA 2P1MB 4KHYA 3LDBA 3SUOA 2JHCA 1FZIE 2VJ4A 3K2OA 4FK2A 4RG8A 4AKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZ6 E;  1XU5 E;  1MTY G;  1XU3 E;  1XVE E;  1XVD E;  1XVB E;  1FZ3 E;  1FZ9 E;  1XVG E;  4GAM C;  1FZ5 E;  1FZ2 E;  1XVF E;  1MHY G;  1FZ1 E;  1XMH E;  1FYZ E;  1XMG E;  1XMF E;  1FZ4 E;  1FZ7 E;  1FZI E;  1FZ0 E;  1FZH E;  1FZ8 E;  1MHZ G;  1XVC E;  1MMO G; 
#chains in the Genus database with same CATH topology
 3J2P A;  2JHP A;  4DTX A;  4J2B A;  3L2O B;  4KHW A;  5H37 A;  4M3T A;  3L8B A;  2YB5 A;  3HGK E;  3LZI A;  1XU5 E;  2OZM A;  3HP9 A;  1XU3 E;  3TJY A;  2OYQ A;  2MMB A;  4HCC A;  1LDK E;  4FJX A;  3TAG A;  1P22 A;  4B08 A;  3V7D B;  4ADN A;  4FJH A;  3TAB A;  3NE6 A;  4DTN A;  4DTU A;  4E4B A;  3RMC A;  3RMA A;  3QEX A;  2VJ5 A;  2P5G A;  4GAM C;  4EYW A;  1FXX A;  1MHY G;  2OVP B;  2P1P B;  4DU1 A;  4FJM A;  1FZ1 E;  1XL3 C;  3QNO A;  3QEP A;  3SPY A;  3SJJ A;  4KHN A;  4ADO A;  4J2A A;  4KI4 A;  4M3Z A;  4M3R A;  3NAE A;  3WSO A;  2JH8 A;  3NCI A;  3N1B A;  1XMF E;  2JH9 A;  1WAJ A;  1FZ4 E;  3LD8 A;  4FJ8 A;  1FZ7 E;  4FJ9 A;  2FYO A;  1XVC E;  1MMO G;  1Q9Y A;  3E4Y A;  4FK4 A;  3CFO A;  4DU3 A;  2HD0 A;  4M45 A;  3LDS A;  4I6J B;  4DTO A;  4DTP A;  4JS5 A;  4X5N A;  3TL8 B;  1XVE E;  1XVD E;  3HL8 A;  1XVB E;  3NDK A;  4X5M A;  4JRP A;  1FZ3 E;  1FZ9 E;  3L0M A;  4JS4 A;  3RMD A;  4DTJ A;  3C6N B;  3OGK B;  4RNG A;  4KHU A;  3SNN A;  4FJ7 A;  2LF6 A;  4FJN A;  3NGI A;  2MW2 A;  2PFT A;  2ATQ A;  1XMH E;  3S9H A;  2K5S A;  3SQ4 A;  3SUQ A;  3QET A;  1XMG E;  2E31 A;  2DY4 A;  3CFP A;  1FZ0 E;  1FZ8 E;  4FVM A;  3BVO A;  2H4T A;  4J2D A;  1FS1 A;  2E32 A;  3KD5 E;  3QEV A;  2OZS A;  4FJ5 A;  2VIX A;  2DEB A;  2JHA A;  2RKH A;  4M3X A;  3NHG A;  1NEX B;  3CQ8 A;  4E3S A;  1IH7 A;  4IT5 A;  3C6O B;  3QNN A;  3SQ2 A;  3SPZ A;  2PFV A;  3RWU A;  4M3Y A;  1N1C A;  3QEW A;  1Q9X A;  4M3W A;  3N1E A;  2QXF A;  3C95 A;  2OVQ B;  3LZJ A;  1XVG E;  4DTS A;  3QEI A;  3SQ1 A;  4QNC A;  1FZ5 E;  4DTR A;  1XVF E;  4DTM A;  4FJI A;  3SVI A;  3OGL B;  3SUP A;  3QES A;  3J27 A;  2RCU A;  3HGL A;  4QND A;  1IG9 A;  1WAF A;  3MKS B;  3E4W A;  2P1N B;  2B7M A;  2OVR B;  3C6P B;  4FJJ A;  4HCB A;  4AI6 A;  1FZH E;  4KHS A;  1MHZ G;  2DTU A;  3TAF A;  3SI6 A;  3C94 A;  3KD1 E;  3TAE A;  4M3U A;  3QER A;  3UIQ A;  4J2E A;  2JQT A;  1FZ6 E;  1JW2 A;  5IBK B;  2B8I A;  1MTY G;  2JPN A;  4I9L A;  3UO2 A;  4KI6 A;  3RMB A;  4KHQ A;  4ICG C;  2P1O B;  2FW3 A;  4I9Q A;  4FJL A;  3SCX A;  4EPH A;  3OGM B;  3L1N A;  4AKG A;  4M41 A;  2LF3 A;  4DU4 A;  3SQ0 A;  4RL5 A;  3SUN A;  2P1Q B;  3UO3 A;  2MZW B;  4FJG A;  1FPO A;  2P5O A;  5IRE A;  5IZ7 A;  4M42 A;  1FZ2 E;  4FJK A;  4AKI A;  2B1E A;  4JRQ A;  4EP9 A;  3CFR A;  4FK0 A;  1FYZ E;  1CLQ A;  2P1M B;  4KHY A;  3LDB A;  3SUO A;  2JHC A;  1FZI E;  2VJ4 A;  3K2O A;  4FK2 A;  4RG8 A;  4AKH A; 
#chains in the Genus database with same CATH homology
 3J2P A;  2JHP A;  4DTX A;  4J2B A;  3L2O B;  4KHW A;  5H37 A;  4M3T A;  3L8B A;  2YB5 A;  3HGK E;  3LZI A;  1XU5 E;  2OZM A;  3HP9 A;  1XU3 E;  3TJY A;  2OYQ A;  2MMB A;  4HCC A;  1LDK E;  4FJX A;  3TAG A;  1P22 A;  4B08 A;  3V7D B;  4ADN A;  4FJH A;  3TAB A;  3NE6 A;  4DTN A;  4DTU A;  4E4B A;  3RMC A;  3RMA A;  3QEX A;  2VJ5 A;  2P5G A;  4GAM C;  4EYW A;  1FXX A;  1MHY G;  2OVP B;  2P1P B;  4DU1 A;  4FJM A;  1FZ1 E;  1XL3 C;  3QNO A;  3QEP A;  3SPY A;  3SJJ A;  4KHN A;  4ADO A;  4J2A A;  4KI4 A;  4M3Z A;  4M3R A;  3NAE A;  3WSO A;  2JH8 A;  3NCI A;  3N1B A;  1XMF E;  2JH9 A;  1WAJ A;  1FZ4 E;  3LD8 A;  4FJ8 A;  1FZ7 E;  4FJ9 A;  2FYO A;  1XVC E;  1MMO G;  1Q9Y A;  3E4Y A;  4FK4 A;  3CFO A;  4DU3 A;  2HD0 A;  4M45 A;  3LDS A;  4I6J B;  4DTO A;  4DTP A;  4JS5 A;  4X5N A;  3TL8 B;  1XVE E;  1XVD E;  3HL8 A;  1XVB E;  3NDK A;  4X5M A;  4JRP A;  1FZ3 E;  1FZ9 E;  3L0M A;  4JS4 A;  3RMD A;  4DTJ A;  3C6N B;  3OGK B;  4RNG A;  4KHU A;  3SNN A;  4FJ7 A;  2LF6 A;  4FJN A;  3NGI A;  2PFT A;  2ATQ A;  1XMH E;  3S9H A;  3SQ4 A;  3SUQ A;  3QET A;  1XMG E;  2E31 A;  2DY4 A;  3CFP A;  1FZ0 E;  1FZ8 E;  4FVM A;  2H4T A;  4J2D A;  1FS1 A;  2E32 A;  3KD5 E;  3QEV A;  2OZS A;  4FJ5 A;  2VIX A;  2DEB A;  2JHA A;  4M3X A;  3NHG A;  1NEX B;  3CQ8 A;  4E3S A;  1IH7 A;  3C6O B;  3QNN A;  3SQ2 A;  3SPZ A;  2PFV A;  3RWU A;  4M3Y A;  1Q9X A;  3QEW A;  4M3W A;  3N1E A;  2QXF A;  3C95 A;  2OVQ B;  3LZJ A;  1XVG E;  4DTS A;  3QEI A;  3SQ1 A;  4QNC A;  1FZ5 E;  4DTR A;  1XVF E;  4DTM A;  4FJI A;  3SVI A;  3OGL B;  3SUP A;  3QES A;  3J27 A;  2RCU A;  3HGL A;  4QND A;  1IG9 A;  1WAF A;  3MKS B;  3E4W A;  3C6P B;  2P1N B;  2B7M A;  2OVR B;  4FJJ A;  4HCB A;  4AI6 A;  1FZH E;  4KHS A;  1MHZ G;  2DTU A;  3TAF A;  3SI6 A;  3C94 A;  3KD1 E;  3TAE A;  4M3U A;  3QER A;  3UIQ A;  4J2E A;  1FZ6 E;  5IBK B;  2B8I A;  1MTY G;  2JPN A;  4I9L A;  4KI6 A;  4KHQ A;  3RMB A;  2P1O B;  2FW3 A;  4I9Q A;  4FJL A;  3SCX A;  4EPH A;  3OGM B;  3L1N A;  4AKG A;  4M41 A;  2LF3 A;  4DU4 A;  3SQ0 A;  4RL5 A;  3SUN A;  2P1Q B;  2MZW B;  4FJG A;  2P5O A;  5IRE A;  5IZ7 A;  4M42 A;  1FZ2 E;  4FJK A;  4AKI A;  2B1E A;  4JRQ A;  4EP9 A;  3CFR A;  4FK0 A;  1FYZ E;  1CLQ A;  2P1M B;  4KHY A;  3LDB A;  3SUO A;  2JHC A;  1FZI E;  2VJ4 A;  3K2O A;  4FK2 A;  4RG8 A;  4AKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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