1XW3A

Crystal structure of human sulfiredoxin (srx)
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
110
structure length
110
Chain Sequence
GPHMSIHSGRIAAVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SULFIREDOXIN
publication title Structural basis for the retroreduction of inactivated peroxiredoxins by human sulfiredoxin.
pubmed doi rcsb
source organism Homo sapiens
total genus 30
structure length 110
sequence length 110
ec nomenclature ec 1.8.98.2: Sulfiredoxin.
pdb deposition date 2004-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02195 ParBc ParB-like nuclease domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1530.10 Alpha Beta Alpha-Beta Complex Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 1xw3A01
3CYIA 1XW4X 1YZSA 3HY2X 1XW3A 2B6FA 2RIIX 1VK1A 2HWJA
chains in the Genus database with same CATH superfamily
3CYIA 3VSCA 1XW4X 1VZ0A 3VSDA 5B36A 1YZSA 3HY2X 1XW3A 5B3AA 3VSAA 1WKVA 2B6FA 2RIIX 1VK1A 2HWJA
chains in the Genus database with same CATH topology
3CYIA 3VSCA 1XW4X 1VZ0A 3VSDA 5B36A 1YZSA 3HY2X 1XW3A 5B3AA 3VSAA 1WKVA 2B6FA 2RIIX 1VK1A 2HWJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CYI A;  1XW4 X;  1YZS A;  3HY2 X;  1XW3 A;  2B6F A;  2RII X;  1VK1 A;  2HWJ A; 
#chains in the Genus database with same CATH topology
 3CYI A;  3VSC A;  1XW4 X;  1VZ0 A;  3VSD A;  5B36 A;  1YZS A;  3HY2 X;  1XW3 A;  5B3A A;  3VSA A;  1WKV A;  2B6F A;  2RII X;  1VK1 A;  2HWJ A; 
#chains in the Genus database with same CATH homology
 3CYI A;  3VSC A;  1XW4 X;  1VZ0 A;  3VSD A;  5B36 A;  1YZS A;  3HY2 X;  1XW3 A;  5B3A A;  3VSA A;  1WKV A;  2B6F A;  2RII X;  1VK1 A;  2HWJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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