1Y02A

Crystal structure of a fyve-type domain from caspase regulator carp2
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
95
structure length
91
Chain Sequence
PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords FYVE-RING finger protein SAKURA
publication title Crystal structure of a FYVE-type zinc finger domain from the caspase regulator CARP2.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 91
sequence length 95
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2004-11-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.140 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 1y02A01
1Y02A
chains in the Genus database with same CATH superfamily
1KHCA 3LLRA 2G80A 1EN7A 1JJRA 2MPHA 1H9FA 2DK4A 2WQGA 1Y02A 5CIUA 2JVWA 1GJJA 1GKUB 1GL9B 3L0OA 2KVEA 1A63A 1ZBHA 1ZS9A 2KFVA 1JEQA 2RNOA 1A8VA 1A62A 3FLGA 2QNCA 2A8VA 2LD7A 2KVUA 1H9EA 1H1JS 4BITA 2LC3A 1JEIA 2W51A 1E7LA 1YNSA 2KW9A 2RNNA 4UZWA 1E7DA 2HJQA 2ODGC 3QKJA 2KVDA 1V66A 2ODCI 2QNFA
chains in the Genus database with same CATH topology
2G80A 1EN7A 2MPHA 1H9FA 2DK4A 1Y02A 1GJJA 1GKUB 1GL9B 3L0OA 1A63A 1ZS9A 2KFVA 1A8VA 1A62A 2QNCA 2A8VA 1H9EA 2LD7A 2LC3A 1JEIA 2W51A 1E7LA 1YNSA 1E7DA 2HJQA 2ODGC 2ODCI 2QNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y02 A; 
#chains in the Genus database with same CATH topology
 1KHC A;  3LLR A;  2G80 A;  1EN7 A;  1JJR A;  2MPH A;  1H9F A;  2DK4 A;  2WQG A;  1Y02 A;  5CIU A;  2JVW A;  1GJJ A;  1GKU B;  1GL9 B;  3L0O A;  2KVE A;  1A63 A;  1ZBH A;  1ZS9 A;  2KFV A;  1JEQ A;  2RNO A;  1A8V A;  1A62 A;  3FLG A;  2QNC A;  2A8V A;  2LD7 A;  2KVU A;  1H9E A;  1H1J S;  4BIT A;  2LC3 A;  1JEI A;  2W51 A;  1E7L A;  1YNS A;  2KW9 A;  2RNN A;  4UZW A;  1E7D A;  2HJQ A;  2ODG C;  3QKJ A;  2KVD A;  1V66 A;  2ODC I;  2QNF A; 
#chains in the Genus database with same CATH homology
 2G80 A;  1EN7 A;  2MPH A;  1H9F A;  2DK4 A;  1Y02 A;  1GJJ A;  1GKU B;  1GL9 B;  3L0O A;  1A63 A;  1ZS9 A;  2KFV A;  1A8V A;  1A62 A;  2QNC A;  2A8V A;  1H9E A;  2LD7 A;  2LC3 A;  1JEI A;  2W51 A;  1E7L A;  1YNS A;  1E7D A;  2HJQ A;  2ODG C;  2ODC I;  2QNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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