1Y0ZA

X-ray structure of gene product from arabidopsis thaliana at3g21360
Total Genus 91
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
327
structure length
321
Chain Sequence
LLLVETPIPQQKHYESKPFPAVISPPPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords protein product of AT3G21360
publication title The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 91
structure length 321
sequence length 327
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1y0zA00
5HSXA 3R1JA 4NE0A 3SWTA 1GQWA 1VZ4A 3V15A 3O2GA 1OS7A 5KEUA 2OG6A 2OG5A 4M2EA 1DRTA 1VZ5A 4YLMX 1DS0A 3PVJA 4CVYA 1GY9A 1OIKA 1OIHA 1DS1A 2R6SA 4FFAA 4BHFA 1OIJA 4BGKA 1OIJC 1OIIA 1NX8A 1NX4A 4M2FA 1GVGA 4M2IA 4M23A 1OTJA 4M25A 1JR7A 4Y0EA 4OJ8A 3EATX 4BHIA 3MS5A 2WBPA 4C5WA 4J5IA 4M27A 4BHGA 4BG1A 2OG7A 4M2GA 5J92A 4BGMA 3N6WA 1OIJB 1DRYA 2WBOA 4CWDA 3V17A 4M26A 2WBQA 1Y0ZA 4C8RA 2Q4AA 4M2CA
chains in the Genus database with same CATH superfamily
5HSXA 3R1JA 4NE0A 3SWTA 1GQWA 1VZ4A 3V15A 3O2GA 4M26A 1OS7A 5KEUA 2OG6A 2OG5A 4M2EA 1DRTA 1VZ5A 4YLMX 1DS0A 3PVJA 4CVYA 1GY9A 1OIKA 1OIHA 1DS1A 2R6SA 4FFAA 4BHFA 1OIJA 4BGKA 1OIJC 1OIIA 1NX8A 1NX4A 4M2FA 1GVGA 4M2IA 4M23A 1OTJA 4M25A 1JR7A 4Y0EA 4OJ8A 3EATX 4BHIA 3MS5A 2WBPA 4C5WA 4J5IA 4M27A 4BHGA 4BG1A 1YOXA 2OG7A 4M2GA 5J92A 4BGMA 3N6WA 1OIJB 1DRYA 2WBOA 4CWDA 3V17A 1PG6A 2WBQA 1Y0ZA 4C8RA 2Q4AA 4M2CA
chains in the Genus database with same CATH topology
2WA3A 4B7EA 1GQWA 1OS7A 4CVYA 1OIHA 4FFAA 4BHFA 1OIJA 3SWTA 1GVGA 4M23A 1OTJA 1JR7A 3MS5A 2WBPA 2ILMA 5JWPA 2WBOA 4CWDA 3V17A 2WBQA 4AI8A 1VZ4A 3P3NA 2XUMA 3O2GA 3V15A 4YLMX 1DS0A 4BIOA 4BGKA 1IZ3A 4M2FA 2WA4A 2YC0A 4Y0EA 4BHIA 4Z1VA 2CGOA 3KCYA 4BG1A 2OG7A 5J92A 3KCXA 3P3PA 1Y0ZA 2Q4AA 4M2CA 2W0XA 1H2MA 3R1JA 3OD4A 4B7KA 2OG5A 1DRTA 4NR1A 1GY9A 2Y0IA 1NX8A 4M2IA 5KEUA 4OJ8A 3EATX 4C5WA 4JAAA 1MZEA 2CGNA 4BHGA 4M2GA 1OIJB 1DRYA 1H2KA 4M26A 4M2EA 3D8CA 1H2LA 5HSXA 2YDEA 4NE0A 2OG6A 1VZ5A 3PVJA 1OIKA 1DS1A 2R6SA 1H2NA 1OIIA 1OIJC 1NX4A 1MZFA 4M25A 1YCIA 4J5IA 4M27A 4Z2WA 4BGMA 3N6WA 4C8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HSX A;  3R1J A;  4NE0 A;  3SWT A;  1GQW A;  1VZ4 A;  3V15 A;  3O2G A;  1OS7 A;  5KEU A;  2OG6 A;  2OG5 A;  4M2E A;  1DRT A;  1VZ5 A;  4YLM X;  1DS0 A;  3PVJ A;  4CVY A;  1GY9 A;  1OIK A;  1OIH A;  1DS1 A;  2R6S A;  4FFA A;  4BHF A;  1OIJ A;  4BGK A;  1OIJ C;  1OII A;  1NX8 A;  1NX4 A;  4M2F A;  1GVG A;  4M2I A;  4M23 A;  1OTJ A;  4M25 A;  1JR7 A;  4Y0E A;  4OJ8 A;  3EAT X;  4BHI A;  3MS5 A;  2WBP A;  4C5W A;  4J5I A;  4M27 A;  4BHG A;  4BG1 A;  2OG7 A;  4M2G A;  5J92 A;  4BGM A;  3N6W A;  1OIJ B;  1DRY A;  2WBO A;  4CWD A;  3V17 A;  4M26 A;  2WBQ A;  1Y0Z A;  4C8R A;  2Q4A A;  4M2C A; 
#chains in the Genus database with same CATH topology
 5HSX A;  3R1J A;  4NE0 A;  3SWT A;  1GQW A;  1VZ4 A;  3V15 A;  3O2G A;  4M26 A;  1OS7 A;  5KEU A;  2OG6 A;  2OG5 A;  4M2E A;  1DRT A;  1VZ5 A;  4YLM X;  1DS0 A;  3PVJ A;  4CVY A;  1GY9 A;  1OIK A;  1OIH A;  1DS1 A;  2R6S A;  4FFA A;  4BHF A;  1OIJ A;  4BGK A;  1OIJ C;  1OII A;  1NX8 A;  1NX4 A;  4M2F A;  1GVG A;  4M2I A;  4M23 A;  1OTJ A;  4M25 A;  1JR7 A;  4Y0E A;  4OJ8 A;  3EAT X;  4BHI A;  3MS5 A;  2WBP A;  4C5W A;  4J5I A;  4M27 A;  4BHG A;  4BG1 A;  1YOX A;  2OG7 A;  4M2G A;  5J92 A;  4BGM A;  3N6W A;  1OIJ B;  1DRY A;  2WBO A;  4CWD A;  3V17 A;  1PG6 A;  2WBQ A;  1Y0Z A;  4C8R A;  2Q4A A;  4M2C A; 
#chains in the Genus database with same CATH homology
 2WA3 A;  4B7E A;  1GQW A;  1OS7 A;  4CVY A;  1OIH A;  4FFA A;  4BHF A;  1OIJ A;  3SWT A;  1GVG A;  4M23 A;  1OTJ A;  1JR7 A;  3MS5 A;  2WBP A;  2ILM A;  5JWP A;  2WBO A;  4CWD A;  3V17 A;  2WBQ A;  4AI8 A;  1VZ4 A;  3P3N A;  2XUM A;  3O2G A;  3V15 A;  4YLM X;  1DS0 A;  4BIO A;  4BGK A;  1IZ3 A;  4M2F A;  2WA4 A;  2YC0 A;  4Y0E A;  4BHI A;  4Z1V A;  2CGO A;  3KCY A;  4BG1 A;  2OG7 A;  5J92 A;  3KCX A;  3P3P A;  1Y0Z A;  2Q4A A;  4M2C A;  2W0X A;  1H2M A;  3R1J A;  3OD4 A;  4B7K A;  2OG5 A;  1DRT A;  4NR1 A;  1GY9 A;  2Y0I A;  1NX8 A;  4M2I A;  5KEU A;  4OJ8 A;  3EAT X;  4C5W A;  4JAA A;  1MZE A;  2CGN A;  4BHG A;  4M2G A;  1OIJ B;  1DRY A;  1H2K A;  4M26 A;  4M2E A;  3D8C A;  1H2L A;  5HSX A;  2YDE A;  4NE0 A;  2OG6 A;  1VZ5 A;  3PVJ A;  1OIK A;  1DS1 A;  2R6S A;  1H2N A;  1OII A;  1OIJ C;  1NX4 A;  1MZF A;  4M25 A;  1YCI A;  4J5I A;  4M27 A;  4Z2W A;  4BGM A;  3N6W A;  4C8R A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...