1Y1NA

Identification of sh3 motif in m. tuberculosis methionine aminopeptidase suggests a mode of interaction with the ribosome
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
282
structure length
282
Chain Sequence
RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Mycobacterium tuberculosis
publication title Identification of an SH3-Binding Motif in a New Class of Methionine Aminopeptidases from Mycobacterium tuberculosis Suggests a Mode of Interaction with the Ribosome
pubmed doi rcsb
molecule keywords Methionine aminopeptidase 1B
total genus 86
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2004-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1y1nA01
4U6ZA 4ZNGA 1QXYA 1XNZA 1W2MA 2BHAA 2ZSGA 5CLSA 2BWVA 2EVMA 3MX6A 4U75A 1C21A 2DFIA 1XGNA 4ZWOA 2B3LA 2EVCA 4R60A 1QXWA 1R5HA 1R5GA 4PNCA 1YVMA 1BN5A 3IU7A 2EVOA 1PV9A 3CB6A 3MATA 1M35A 3PKBA 4IKRA 4IPAA 4PV4A 2BHBA 2GA2A 2GG0A 3PKAA 3BITA 3FMRA 4FLLA 5FCFA 3Q6DA 3CB5A 1CHMA 4KM3A 3MR1A 1WN1A 3IU8A 4RZZA 4ZWPA 4S2RP 4ZWUA 2V3YA 4U73A 2GGBA 4FUKA 1B59A 3TB5A 5CIKA 5CDLA 1N51A 4EGEA 1QZYA 1XGOA 2NQ6A 2GU7A 2B3HA 2Q94A 4U6CA 1C23A 4FKCA 3S6BA 2ADUA 2GU5A 3RORA 4HXXA 4B28A 1C27A 1WKMA 4U6JA 2EA4A 2B3KA 1R58A 1YJ3A 2EA2A 1O0XA 2GG3A 3FMQA 4IDYA 2P98A 2IW2A 5D6EA 2GU4A 5JI6A 4IF7A 4FO7A 2BWXA 2V3ZA 1MATA 1BOAA 1KQ9A 1YW8A 4IKUA 4S01A 1QXZA 2OKNA 2BH3A 1W7VA 5CDVA 3D27A 2BWWA 2BB7A 5FCHA 3BIQA 2NQ7A 2GGCA 2HOWA 4U70A 4Z7MA 2GTXA 1XGMA 3RVAA 2GG9A 2Q8KA 2BWSA 3PKEA 4A6WA 3BIPA 1B6AA 2Q93A 2Q92A 4FLKA 4S2TP 2Q95A 3L7GA 2P99A 5CNXA 2BWTA 1XGSA 2BN7A 4IECA 4FLJA 1YW9A 2GG5A 1YW7A 3CTZA 3TAVA 5JHUA 4FLIA 4IU6A 4FO8A 4IKSA 4OOKA 4RZYA 1KP0A 3IU9A 3L24A 3PKDA 2GG2A 2GG8A 2P9AA 4RGZ1 4QR8A 1WLRA 2Q96A 5CDEA 3IG4A 5JFRA 4JUQA 4U76A 4U71A 3PKCA 2G6PA 2BHDA 4IKTA 4S00A 4U6EA 5D6FA 1A16A 1WBQA 4U6WA 5CE6A 2MATA 2V6CA 1C24A 2OAZA 4MATA 1WL9A 3FM3A 2BWUA 4A6VA 2V3XA 2GG7A 1WL6A 5E5BA 1KQ0A 2BHCA 1JAWA 1WY2A 1Y1NA 1C22A 4U69A 2GZ5A 4U1BA 2BWYA 2GU6A
chains in the Genus database with same CATH superfamily
4U6ZA 4ZNGA 1QXYA 1XNZA 1W2MA 2BHAA 2ZSGA 5CLSA 2BWVA 2EVMA 3MX6A 4U75A 1C21A 2DFIA 1XGNA 4ZWOA 2B3LA 2EVCA 4R60A 1QXWA 1R5HA 1R5GA 4PNCA 1YVMA 1BN5A 3IU7A 2EVOA 1PV9A 3CB6A 3MATA 1M35A 3PKBA 4IKRA 4IPAA 4PV4A 2BHBA 2GA2A 2GG0A 3PKAA 3BITA 3FMRA 4FLLA 5FCFA 3Q6DA 3CB5A 1CHMA 4KM3A 3MR1A 1WN1A 3IU8A 4RZZA 4ZWPA 4S2RP 4ZWUA 2V3YA 4U73A 2GGBA 4FUKA 1B59A 3TB5A 5CIKA 5CDLA 1N51A 4EGEA 1QZYA 1XGOA 2NQ6A 2GU7A 2B3HA 2Q94A 4U6CA 1C23A 4FKCA 3S6BA 2ADUA 2GU5A 3RORA 4HXXA 4B28A 1C27A 1WKMA 4U6JA 2EA4A 2B3KA 1R58A 1YJ3A 2EA2A 1O0XA 2GG3A 3FMQA 4IDYA 2P98A 2IW2A 5D6EA 2GU4A 5JI6A 4IF7A 4FO7A 2BWXA 2V3ZA 1MATA 1BOAA 1KQ9A 1YW8A 4IKUA 4S01A 1QXZA 2OKNA 2BH3A 1W7VA 5CDVA 3D27A 2BWWA 2BB7A 5FCHA 3BIQA 2NQ7A 2GGCA 2HOWA 4U70A 4Z7MA 2GTXA 1XGMA 3RVAA 2GG9A 2Q8KA 2BWSA 3PKEA 4A6WA 3BIPA 1B6AA 2Q93A 2Q92A 4FLKA 4S2TP 2Q95A 3L7GA 2P99A 5CNXA 2BWTA 1XGSA 2BN7A 4IECA 4FLJA 1YW9A 2GG5A 1YW7A 3CTZA 3TAVA 5JHUA 4FLIA 4IU6A 4FO8A 4IKSA 4OOKA 4RZYA 1KP0A 3IU9A 3L24A 3PKDA 2GG2A 2GG8A 2P9AA 4RGZ1 4QR8A 1WLRA 2Q96A 5CDEA 3IG4A 5JFRA 4JUQA 4U76A 4U71A 3PKCA 2G6PA 2BHDA 4IKTA 4S00A 4U6EA 5D6FA 1A16A 1WBQA 4U6WA 5CE6A 2MATA 2V6CA 1C24A 2OAZA 4MATA 1WL9A 3FM3A 2BWUA 4A6VA 2V3XA 2GG7A 1WL6A 5E5BA 1KQ0A 2BHCA 1JAWA 1WY2A 1Y1NA 1C22A 4U69A 2GZ5A 4U1BA 2BWYA 2GU6A
chains in the Genus database with same CATH topology
4U6ZA 4ZNGA 1QXYA 1XNZA 1W2MA 2BHAA 2ZSGA 5CLSA 2BWVA 2EVMA 3MX6A 4U75A 1C21A 2DFIA 1XGNA 4ZWOA 2B3LA 2EVCA 4R60A 1QXWA 1R5HA 1R5GA 4PNCA 1YVMA 1BN5A 3IU7A 2EVOA 1PV9A 3CB6A 3MATA 1M35A 3PKBA 4IKRA 4IPAA 4PV4A 2BHBA 2GA2A 2GG0A 3PKAA 3BITA 3FMRA 4FLLA 5FCFA 3Q6DA 3CB5A 1CHMA 4KM3A 3MR1A 1WN1A 3IU8A 4RZZA 4ZWPA 4S2RP 4ZWUA 2V3YA 4U73A 2GGBA 4FUKA 1B59A 3TB5A 5CIKA 5CDLA 1N51A 4EGEA 1QZYA 1XGOA 2NQ6A 2GU7A 2B3HA 2Q94A 4U6CA 1C23A 4FKCA 3S6BA 2ADUA 2GU5A 3RORA 4HXXA 4B28A 1C27A 1WKMA 4U6JA 2EA4A 2B3KA 1R58A 1YJ3A 2EA2A 1O0XA 2GG3A 3FMQA 4IDYA 2P98A 2IW2A 5D6EA 2GU4A 5JI6A 4IF7A 4FO7A 2BWXA 2V3ZA 1MATA 1BOAA 1KQ9A 1YW8A 4IKUA 4S01A 1QXZA 2OKNA 2BH3A 1W7VA 5CDVA 3D27A 2BWWA 2BB7A 5FCHA 3BIQA 2NQ7A 2GGCA 2HOWA 4U70A 4Z7MA 2GTXA 1XGMA 3RVAA 2GG9A 2Q8KA 2BWSA 3PKEA 4A6WA 3BIPA 1B6AA 2Q93A 2Q92A 4FLKA 4S2TP 2Q95A 3L7GA 2P99A 5CNXA 2BWTA 1XGSA 2BN7A 4IECA 4FLJA 1YW9A 2GG5A 1YW7A 3CTZA 3TAVA 5JHUA 4FLIA 4IU6A 4FO8A 4IKSA 4OOKA 4RZYA 1KP0A 3IU9A 3L24A 3PKDA 2GG2A 2GG8A 2P9AA 4RGZ1 4QR8A 1WLRA 2Q96A 5CDEA 3IG4A 5JFRA 4JUQA 4U76A 4U71A 3PKCA 2G6PA 2BHDA 4IKTA 4S00A 4U6EA 5D6FA 1A16A 1WBQA 4U6WA 5CE6A 2MATA 2V6CA 1C24A 2OAZA 4MATA 1WL9A 3FM3A 2BWUA 4A6VA 2V3XA 2GG7A 1WL6A 5E5BA 1KQ0A 2BHCA 1JAWA 1WY2A 1Y1NA 1C22A 4U69A 2GZ5A 4U1BA 2BWYA 2GU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U6Z A;  4ZNG A;  1QXY A;  1XNZ A;  1W2M A;  2BHA A;  2ZSG A;  5CLS A;  2BWV A;  2EVM A;  3MX6 A;  4U75 A;  1C21 A;  2DFI A;  1XGN A;  4ZWO A;  2B3L A;  2EVC A;  4R60 A;  1QXW A;  1R5H A;  1R5G A;  4PNC A;  1YVM A;  1BN5 A;  3IU7 A;  2EVO A;  1PV9 A;  3CB6 A;  3MAT A;  1M35 A;  3PKB A;  4IKR A;  4IPA A;  4PV4 A;  2BHB A;  2GA2 A;  2GG0 A;  3PKA A;  3BIT A;  3FMR A;  4FLL A;  5FCF A;  3Q6D A;  3CB5 A;  1CHM A;  4KM3 A;  3MR1 A;  1WN1 A;  3IU8 A;  4RZZ A;  4ZWP A;  4S2R P;  4ZWU A;  2V3Y A;  4U73 A;  2GGB A;  4FUK A;  1B59 A;  3TB5 A;  5CIK A;  5CDL A;  1N51 A;  4EGE A;  1QZY A;  1XGO A;  2NQ6 A;  2GU7 A;  2B3H A;  2Q94 A;  4U6C A;  1C23 A;  4FKC A;  3S6B A;  2ADU A;  2GU5 A;  3ROR A;  4HXX A;  4B28 A;  1C27 A;  1WKM A;  4U6J A;  2EA4 A;  2B3K A;  1R58 A;  1YJ3 A;  2EA2 A;  1O0X A;  2GG3 A;  3FMQ A;  4IDY A;  2P98 A;  2IW2 A;  5D6E A;  2GU4 A;  5JI6 A;  4IF7 A;  4FO7 A;  2BWX A;  2V3Z A;  1MAT A;  1BOA A;  1KQ9 A;  1YW8 A;  4IKU A;  4S01 A;  1QXZ A;  2OKN A;  2BH3 A;  1W7V A;  5CDV A;  3D27 A;  2BWW A;  2BB7 A;  5FCH A;  3BIQ A;  2NQ7 A;  2GGC A;  2HOW A;  4U70 A;  4Z7M A;  2GTX A;  1XGM A;  3RVA A;  2GG9 A;  2Q8K A;  2BWS A;  3PKE A;  4A6W A;  3BIP A;  1B6A A;  2Q93 A;  2Q92 A;  4FLK A;  4S2T P;  2Q95 A;  3L7G A;  2P99 A;  5CNX A;  2BWT A;  1XGS A;  2BN7 A;  4IEC A;  4FLJ A;  1YW9 A;  2GG5 A;  1YW7 A;  3CTZ A;  3TAV A;  5JHU A;  4FLI A;  4IU6 A;  4FO8 A;  4IKS A;  4OOK A;  4RZY A;  1KP0 A;  3IU9 A;  3L24 A;  3PKD A;  2GG2 A;  2GG8 A;  2P9A A;  4RGZ 1;  4QR8 A;  1WLR A;  2Q96 A;  5CDE A;  3IG4 A;  5JFR A;  4JUQ A;  4U76 A;  4U71 A;  3PKC A;  2G6P A;  2BHD A;  4IKT A;  4S00 A;  4U6E A;  5D6F A;  1A16 A;  1WBQ A;  4U6W A;  5CE6 A;  2MAT A;  2V6C A;  1C24 A;  2OAZ A;  4MAT A;  1WL9 A;  3FM3 A;  2BWU A;  4A6V A;  2V3X A;  2GG7 A;  1WL6 A;  5E5B A;  1KQ0 A;  2BHC A;  1JAW A;  1WY2 A;  1Y1N A;  1C22 A;  4U69 A;  2GZ5 A;  4U1B A;  2BWY A;  2GU6 A; 
#chains in the Genus database with same CATH topology
 4U6Z A;  4ZNG A;  1QXY A;  1XNZ A;  1W2M A;  2BHA A;  2ZSG A;  5CLS A;  2BWV A;  2EVM A;  3MX6 A;  4U75 A;  1C21 A;  2DFI A;  1XGN A;  4ZWO A;  2B3L A;  2EVC A;  4R60 A;  1QXW A;  1R5H A;  1R5G A;  4PNC A;  1YVM A;  1BN5 A;  3IU7 A;  2EVO A;  1PV9 A;  3CB6 A;  3MAT A;  1M35 A;  3PKB A;  4IKR A;  4IPA A;  4PV4 A;  2BHB A;  2GA2 A;  2GG0 A;  3PKA A;  3BIT A;  3FMR A;  4FLL A;  5FCF A;  3Q6D A;  3CB5 A;  1CHM A;  4KM3 A;  3MR1 A;  1WN1 A;  3IU8 A;  4RZZ A;  4ZWP A;  4S2R P;  4ZWU A;  2V3Y A;  4U73 A;  2GGB A;  4FUK A;  1B59 A;  3TB5 A;  5CIK A;  5CDL A;  1N51 A;  4EGE A;  1QZY A;  1XGO A;  2NQ6 A;  2GU7 A;  2B3H A;  2Q94 A;  4U6C A;  1C23 A;  4FKC A;  3S6B A;  2ADU A;  2GU5 A;  3ROR A;  4HXX A;  4B28 A;  1C27 A;  1WKM A;  4U6J A;  2EA4 A;  2B3K A;  1R58 A;  1YJ3 A;  2EA2 A;  1O0X A;  2GG3 A;  3FMQ A;  4IDY A;  2P98 A;  2IW2 A;  5D6E A;  2GU4 A;  5JI6 A;  4IF7 A;  4FO7 A;  2BWX A;  2V3Z A;  1MAT A;  1BOA A;  1KQ9 A;  1YW8 A;  4IKU A;  4S01 A;  1QXZ A;  2OKN A;  2BH3 A;  1W7V A;  5CDV A;  3D27 A;  2BWW A;  2BB7 A;  5FCH A;  3BIQ A;  2NQ7 A;  2GGC A;  2HOW A;  4U70 A;  4Z7M A;  2GTX A;  1XGM A;  3RVA A;  2GG9 A;  2Q8K A;  2BWS A;  3PKE A;  4A6W A;  3BIP A;  1B6A A;  2Q93 A;  2Q92 A;  4FLK A;  4S2T P;  2Q95 A;  3L7G A;  2P99 A;  5CNX A;  2BWT A;  1XGS A;  2BN7 A;  4IEC A;  4FLJ A;  1YW9 A;  2GG5 A;  1YW7 A;  3CTZ A;  3TAV A;  5JHU A;  4FLI A;  4IU6 A;  4FO8 A;  4IKS A;  4OOK A;  4RZY A;  1KP0 A;  3IU9 A;  3L24 A;  3PKD A;  2GG2 A;  2GG8 A;  2P9A A;  4RGZ 1;  4QR8 A;  1WLR A;  2Q96 A;  5CDE A;  3IG4 A;  5JFR A;  4JUQ A;  4U76 A;  4U71 A;  3PKC A;  2G6P A;  2BHD A;  4IKT A;  4S00 A;  4U6E A;  5D6F A;  1A16 A;  1WBQ A;  4U6W A;  5CE6 A;  2MAT A;  2V6C A;  1C24 A;  2OAZ A;  4MAT A;  1WL9 A;  3FM3 A;  2BWU A;  4A6V A;  2V3X A;  2GG7 A;  1WL6 A;  5E5B A;  1KQ0 A;  2BHC A;  1JAW A;  1WY2 A;  1Y1N A;  1C22 A;  4U69 A;  2GZ5 A;  4U1B A;  2BWY A;  2GU6 A; 
#chains in the Genus database with same CATH homology
 4U6Z A;  4ZNG A;  1QXY A;  1XNZ A;  1W2M A;  2BHA A;  2ZSG A;  5CLS A;  2BWV A;  2EVM A;  3MX6 A;  4U75 A;  1C21 A;  2DFI A;  1XGN A;  4ZWO A;  2B3L A;  2EVC A;  4R60 A;  1QXW A;  1R5H A;  1R5G A;  4PNC A;  1YVM A;  1BN5 A;  3IU7 A;  2EVO A;  1PV9 A;  3CB6 A;  3MAT A;  1M35 A;  3PKB A;  4IKR A;  4IPA A;  4PV4 A;  2BHB A;  2GA2 A;  2GG0 A;  3PKA A;  3BIT A;  3FMR A;  4FLL A;  5FCF A;  3Q6D A;  3CB5 A;  1CHM A;  4KM3 A;  3MR1 A;  1WN1 A;  3IU8 A;  4RZZ A;  4ZWP A;  4S2R P;  4ZWU A;  2V3Y A;  4U73 A;  2GGB A;  4FUK A;  1B59 A;  3TB5 A;  5CIK A;  5CDL A;  1N51 A;  4EGE A;  1QZY A;  1XGO A;  2NQ6 A;  2GU7 A;  2B3H A;  2Q94 A;  4U6C A;  1C23 A;  4FKC A;  3S6B A;  2ADU A;  2GU5 A;  3ROR A;  4HXX A;  4B28 A;  1C27 A;  1WKM A;  4U6J A;  2EA4 A;  2B3K A;  1R58 A;  1YJ3 A;  2EA2 A;  1O0X A;  2GG3 A;  3FMQ A;  4IDY A;  2P98 A;  2IW2 A;  5D6E A;  2GU4 A;  5JI6 A;  4IF7 A;  4FO7 A;  2BWX A;  2V3Z A;  1MAT A;  1BOA A;  1KQ9 A;  1YW8 A;  4IKU A;  4S01 A;  1QXZ A;  2OKN A;  2BH3 A;  1W7V A;  5CDV A;  3D27 A;  2BWW A;  2BB7 A;  5FCH A;  3BIQ A;  2NQ7 A;  2GGC A;  2HOW A;  4U70 A;  4Z7M A;  2GTX A;  1XGM A;  3RVA A;  2GG9 A;  2Q8K A;  2BWS A;  3PKE A;  4A6W A;  3BIP A;  1B6A A;  2Q93 A;  2Q92 A;  4FLK A;  4S2T P;  2Q95 A;  3L7G A;  2P99 A;  5CNX A;  2BWT A;  1XGS A;  2BN7 A;  4IEC A;  4FLJ A;  1YW9 A;  2GG5 A;  1YW7 A;  3CTZ A;  3TAV A;  5JHU A;  4FLI A;  4IU6 A;  4FO8 A;  4IKS A;  4OOK A;  4RZY A;  1KP0 A;  3IU9 A;  3L24 A;  3PKD A;  2GG2 A;  2GG8 A;  2P9A A;  4RGZ 1;  4QR8 A;  1WLR A;  2Q96 A;  5CDE A;  3IG4 A;  5JFR A;  4JUQ A;  4U76 A;  4U71 A;  3PKC A;  2G6P A;  2BHD A;  4IKT A;  4S00 A;  4U6E A;  5D6F A;  1A16 A;  1WBQ A;  4U6W A;  5CE6 A;  2MAT A;  2V6C A;  1C24 A;  2OAZ A;  4MAT A;  1WL9 A;  3FM3 A;  2BWU A;  4A6V A;  2V3X A;  2GG7 A;  1WL6 A;  5E5B A;  1KQ0 A;  2BHC A;  1JAW A;  1WY2 A;  1Y1N A;  1C22 A;  4U69 A;  2GZ5 A;  4U1B A;  2BWY A;  2GU6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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