1Y1NA

Identification of sh3 motif in m. tuberculosis methionine aminopeptidase suggests a mode of interaction with the ribosome
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
282
structure length
282
Chain Sequence
RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of an SH3-Binding Motif in a New Class of Methionine Aminopeptidases from Mycobacterium tuberculosis Suggests a Mode of Interaction with the Ribosome
pubmed doi rcsb
molecule keywords Methionine aminopeptidase 1B
source organism Mycobacterium tuberculosis
molecule tags Hydrolase
total genus 86
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2004-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1y1nA01
5E5BA 1YW9A 1YW8A 5CLSA 2BWYA 4IDYA 2BWWA 1C23A 2B3LA 2Q93A 4A6VA 3FMQA 1C27A 1WN1A 4S01A 1WY2A 4B28A 2GG8A 1WL6A 2EA4A 4RZYA 1BOAA 2GGCA 3FMRA 2EA2A 4FO7A 2GU7A 4IECA 3CB5A 3IU9A 4U6WA 3L24A 3CTZA 4U73A 2EVMA 3RORA 3D27A 4PV4A 3FM3A 4ZNGA 4FLJA 4FO8A 2BWXA 2GG5A 5JI6A 2MATA 2P9AA 4U69A 1B59A 5FCHA 2P99A 1R5GA 1QXZA 5CDLA 1WKMA 1QZYA 3S6BA 5JHUA 2V3YA 4U70A 4OOKA 2V3ZA 2OKNA 5CDEA 3CB6A 2V3XA 5CIKA 2NQ6A 2B3KA 4S2TP 1C21A 4ZWOA 2Q94A 4S00A 1A16A 3MX6A 1JAWA 1WBQA 1QXYA 1WLRA 3MR1A 4U6EA 2BHCA 4FLLA 4U75A 3PKDA 2BH3A 5D6FA 4JUQA 2BB7A 2GG3A 4QR8A 1BN5A 2Q96A 4ZWPA 4R60A 3PKEA 2Q8KA 1W7VA 1N51A 4U6CA 1C24A 2BN7A 4U71A 4FUKA 2HOWA 4IKUA 3IU8A 1YW7A 3IG4A 4U76A 4FLKA 2BHDA 4MATA 1CHMA 1O0XA 2BWVA 2Q95A 1XGOA 2BWSA 2GU4A 1KQ9A 1YJ3A 2DFIA 2ADUA 3BIPA 2BHBA 4FLIA 2BHAA 1PV9A 3PKAA 4IF7A 5CE6A 2GG2A 4IU6A 1C22A 1KQ0A 1XGMA 2EVCA 3RVAA 4IKTA 2GU6A 2B3HA 3MATA 1M35A 2NQ7A 5D6EA 4A6WA 2GZ5A 4U6ZA 1MATA 4IKRA 4Z7MA 1KP0A 4FKCA 3TB5A 2OAZA 3TAVA 1R5HA 2Q92A 1XGNA 5CDVA 4KM3A 1XNZA 1Y1NA 4S2RP 5FCFA 4U6JA 1R58A 2G6PA 2GG0A 3PKCA 4IKSA 1WL9A 4EGEA 2ZSGA 5CNXA 4RGZ1 3BITA 2GG9A 3Q6DA 4ZWUA 1B6AA 4HXXA 4U1BA 1QXWA 2GGBA 2BWTA 1XGSA 2BWUA 1W2MA 3IU7A 2P98A 5JFRA 2GTXA 2GG7A 3L7GA 4IPAA 3BIQA 3PKBA 2GA2A 2EVOA 2IW2A 2GU5A 2V6CA 4RZZA 1YVMA 4PNCA
chains in the Genus database with same CATH superfamily
5E5BA 1YW9A 1YW8A 5CLSA 2BWYA 4IDYA 2BWWA 1C23A 2B3LA 2Q93A 4A6VA 3FMQA 1C27A 1WN1A 4S01A 1WY2A 4B28A 2GG8A 1WL6A 2EA4A 4RZYA 1BOAA 2GGCA 3FMRA 2EA2A 4FO7A 2GU7A 4IECA 3CB5A 3IU9A 4U6WA 3L24A 3CTZA 4U73A 2EVMA 3RORA 3D27A 4PV4A 3FM3A 4ZNGA 4FLJA 4FO8A 2BWXA 2GG5A 5JI6A 2MATA 2P9AA 4U69A 1B59A 5FCHA 2P99A 1R5GA 1QXZA 5CDLA 1WKMA 1QZYA 3S6BA 5JHUA 2V3YA 4U70A 4OOKA 2V3ZA 2OKNA 5CDEA 3CB6A 2V3XA 5CIKA 2NQ6A 2B3KA 4S2TP 1C21A 4ZWOA 2Q94A 4S00A 1A16A 3MX6A 1JAWA 1WBQA 1QXYA 1WLRA 3MR1A 4U6EA 2BHCA 4FLLA 4U75A 3PKDA 2BH3A 5D6FA 4JUQA 2BB7A 2GG3A 4QR8A 1BN5A 2Q96A 4ZWPA 4R60A 3PKEA 2Q8KA 1W7VA 1N51A 4U6CA 1C24A 2BN7A 4U71A 4FUKA 2HOWA 4IKUA 3IU8A 1YW7A 3IG4A 4U76A 4FLKA 2BHDA 4MATA 1CHMA 1O0XA 2BWVA 2Q95A 1XGOA 2BWSA 2GU4A 1KQ9A 1YJ3A 2DFIA 2ADUA 3BIPA 2BHBA 4FLIA 2BHAA 1PV9A 3PKAA 4IF7A 5CE6A 2GG2A 4IU6A 1C22A 1KQ0A 1XGMA 2EVCA 3RVAA 4IKTA 2GU6A 2B3HA 3MATA 1M35A 2NQ7A 5D6EA 4A6WA 2GZ5A 4U6ZA 1MATA 4IKRA 4Z7MA 1KP0A 4FKCA 3TB5A 2OAZA 3TAVA 1R5HA 2Q92A 1XGNA 5CDVA 4KM3A 1XNZA 1Y1NA 4S2RP 5FCFA 4U6JA 1R58A 2G6PA 2GG0A 3PKCA 4IKSA 1WL9A 4EGEA 2ZSGA 5CNXA 4RGZ1 3BITA 2GG9A 3Q6DA 4ZWUA 1B6AA 4HXXA 4U1BA 1QXWA 2GGBA 2BWTA 1XGSA 2BWUA 1W2MA 3IU7A 2P98A 5JFRA 2GTXA 2GG7A 3L7GA 4IPAA 3BIQA 3PKBA 2GA2A 2EVOA 2IW2A 2GU5A 2V6CA 4RZZA 1YVMA 4PNCA
chains in the Genus database with same CATH topology
5E5BA 1YW9A 1YW8A 5CLSA 2BWYA 4IDYA 2BWWA 1C23A 2B3LA 2Q93A 4A6VA 3FMQA 1C27A 1WN1A 4S01A 1WY2A 4B28A 2GG8A 1WL6A 2EA4A 4RZYA 1BOAA 2GGCA 3FMRA 2EA2A 4FO7A 2GU7A 4IECA 3CB5A 3IU9A 4U6WA 3L24A 3CTZA 4U73A 2EVMA 3RORA 3D27A 4PV4A 3FM3A 4ZNGA 4FLJA 4FO8A 2BWXA 2GG5A 5JI6A 2MATA 2P9AA 4U69A 1B59A 5FCHA 2P99A 1R5GA 1QXZA 5CDLA 1WKMA 1QZYA 3S6BA 5JHUA 2V3YA 4U70A 4OOKA 2V3ZA 2OKNA 5CDEA 3CB6A 2V3XA 5CIKA 2NQ6A 2B3KA 4S2TP 1C21A 4ZWOA 2Q94A 4S00A 1A16A 3MX6A 1JAWA 1WBQA 1QXYA 1WLRA 3MR1A 4U6EA 2BHCA 4FLLA 4U75A 3PKDA 2BH3A 5D6FA 4JUQA 2BB7A 2GG3A 4QR8A 1BN5A 2Q96A 4ZWPA 4R60A 3PKEA 2Q8KA 1W7VA 1N51A 4U6CA 1C24A 2BN7A 4U71A 4FUKA 2HOWA 4IKUA 3IU8A 1YW7A 3IG4A 4U76A 4FLKA 2BHDA 4MATA 1CHMA 1O0XA 2BWVA 2Q95A 1XGOA 2BWSA 2GU4A 1KQ9A 1YJ3A 2DFIA 2ADUA 3BIPA 2BHBA 4FLIA 2BHAA 1PV9A 3PKAA 4IF7A 5CE6A 2GG2A 4IU6A 1C22A 1KQ0A 1XGMA 2EVCA 3RVAA 4IKTA 2GU6A 2B3HA 3MATA 1M35A 2NQ7A 5D6EA 4A6WA 2GZ5A 4U6ZA 1MATA 4IKRA 4Z7MA 1KP0A 4FKCA 3TB5A 2OAZA 3TAVA 1R5HA 2Q92A 1XGNA 5CDVA 4KM3A 1XNZA 1Y1NA 4S2RP 5FCFA 4U6JA 1R58A 2G6PA 2GG0A 3PKCA 4IKSA 1WL9A 4EGEA 2ZSGA 5CNXA 4RGZ1 3BITA 2GG9A 3Q6DA 4ZWUA 1B6AA 4HXXA 4U1BA 1QXWA 2GGBA 2BWTA 1XGSA 2BWUA 1W2MA 3IU7A 2P98A 5JFRA 2GTXA 2GG7A 3L7GA 4IPAA 3BIQA 3PKBA 2GA2A 2EVOA 2IW2A 2GU5A 2V6CA 4RZZA 1YVMA 4PNCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E5B A;  1YW9 A;  1YW8 A;  5CLS A;  2BWY A;  4IDY A;  2BWW A;  1C23 A;  2B3L A;  2Q93 A;  4A6V A;  3FMQ A;  1C27 A;  1WN1 A;  4S01 A;  1WY2 A;  4B28 A;  2GG8 A;  1WL6 A;  2EA4 A;  4RZY A;  1BOA A;  2GGC A;  3FMR A;  2EA2 A;  4FO7 A;  2GU7 A;  4IEC A;  3CB5 A;  3IU9 A;  4U6W A;  3L24 A;  3CTZ A;  4U73 A;  2EVM A;  3ROR A;  3D27 A;  4PV4 A;  3FM3 A;  4ZNG A;  4FLJ A;  4FO8 A;  2BWX A;  2GG5 A;  5JI6 A;  2MAT A;  2P9A A;  4U69 A;  1B59 A;  5FCH A;  2P99 A;  1R5G A;  1QXZ A;  5CDL A;  1WKM A;  1QZY A;  3S6B A;  5JHU A;  2V3Y A;  4U70 A;  4OOK A;  2V3Z A;  2OKN A;  5CDE A;  3CB6 A;  2V3X A;  5CIK A;  2NQ6 A;  2B3K A;  4S2T P;  1C21 A;  4ZWO A;  2Q94 A;  4S00 A;  1A16 A;  3MX6 A;  1JAW A;  1WBQ A;  1QXY A;  1WLR A;  3MR1 A;  4U6E A;  2BHC A;  4FLL A;  4U75 A;  3PKD A;  2BH3 A;  5D6F A;  4JUQ A;  2BB7 A;  2GG3 A;  4QR8 A;  1BN5 A;  2Q96 A;  4ZWP A;  4R60 A;  3PKE A;  2Q8K A;  1W7V A;  1N51 A;  4U6C A;  1C24 A;  2BN7 A;  4U71 A;  4FUK A;  2HOW A;  4IKU A;  3IU8 A;  1YW7 A;  3IG4 A;  4U76 A;  4FLK A;  2BHD A;  4MAT A;  1CHM A;  1O0X A;  2BWV A;  2Q95 A;  1XGO A;  2BWS A;  2GU4 A;  1KQ9 A;  1YJ3 A;  2DFI A;  2ADU A;  3BIP A;  2BHB A;  4FLI A;  2BHA A;  1PV9 A;  3PKA A;  4IF7 A;  5CE6 A;  2GG2 A;  4IU6 A;  1C22 A;  1KQ0 A;  1XGM A;  2EVC A;  3RVA A;  4IKT A;  2GU6 A;  2B3H A;  3MAT A;  1M35 A;  2NQ7 A;  5D6E A;  4A6W A;  2GZ5 A;  4U6Z A;  1MAT A;  4IKR A;  4Z7M A;  1KP0 A;  4FKC A;  3TB5 A;  2OAZ A;  3TAV A;  1R5H A;  2Q92 A;  1XGN A;  5CDV A;  4KM3 A;  1XNZ A;  1Y1N A;  4S2R P;  5FCF A;  4U6J A;  1R58 A;  2G6P A;  2GG0 A;  3PKC A;  4IKS A;  1WL9 A;  4EGE A;  2ZSG A;  5CNX A;  4RGZ 1;  3BIT A;  2GG9 A;  3Q6D A;  4ZWU A;  1B6A A;  4HXX A;  4U1B A;  1QXW A;  2GGB A;  2BWT A;  1XGS A;  2BWU A;  1W2M A;  3IU7 A;  2P98 A;  5JFR A;  2GTX A;  2GG7 A;  3L7G A;  4IPA A;  3BIQ A;  3PKB A;  2GA2 A;  2EVO A;  2IW2 A;  2GU5 A;  2V6C A;  4RZZ A;  1YVM A;  4PNC A; 
#chains in the Genus database with same CATH topology
 5E5B A;  1YW9 A;  1YW8 A;  5CLS A;  2BWY A;  4IDY A;  2BWW A;  1C23 A;  2B3L A;  2Q93 A;  4A6V A;  3FMQ A;  1C27 A;  1WN1 A;  4S01 A;  1WY2 A;  4B28 A;  2GG8 A;  1WL6 A;  2EA4 A;  4RZY A;  1BOA A;  2GGC A;  3FMR A;  2EA2 A;  4FO7 A;  2GU7 A;  4IEC A;  3CB5 A;  3IU9 A;  4U6W A;  3L24 A;  3CTZ A;  4U73 A;  2EVM A;  3ROR A;  3D27 A;  4PV4 A;  3FM3 A;  4ZNG A;  4FLJ A;  4FO8 A;  2BWX A;  2GG5 A;  5JI6 A;  2MAT A;  2P9A A;  4U69 A;  1B59 A;  5FCH A;  2P99 A;  1R5G A;  1QXZ A;  5CDL A;  1WKM A;  1QZY A;  3S6B A;  5JHU A;  2V3Y A;  4U70 A;  4OOK A;  2V3Z A;  2OKN A;  5CDE A;  3CB6 A;  2V3X A;  5CIK A;  2NQ6 A;  2B3K A;  4S2T P;  1C21 A;  4ZWO A;  2Q94 A;  4S00 A;  1A16 A;  3MX6 A;  1JAW A;  1WBQ A;  1QXY A;  1WLR A;  3MR1 A;  4U6E A;  2BHC A;  4FLL A;  4U75 A;  3PKD A;  2BH3 A;  5D6F A;  4JUQ A;  2BB7 A;  2GG3 A;  4QR8 A;  1BN5 A;  2Q96 A;  4ZWP A;  4R60 A;  3PKE A;  2Q8K A;  1W7V A;  1N51 A;  4U6C A;  1C24 A;  2BN7 A;  4U71 A;  4FUK A;  2HOW A;  4IKU A;  3IU8 A;  1YW7 A;  3IG4 A;  4U76 A;  4FLK A;  2BHD A;  4MAT A;  1CHM A;  1O0X A;  2BWV A;  2Q95 A;  1XGO A;  2BWS A;  2GU4 A;  1KQ9 A;  1YJ3 A;  2DFI A;  2ADU A;  3BIP A;  2BHB A;  4FLI A;  2BHA A;  1PV9 A;  3PKA A;  4IF7 A;  5CE6 A;  2GG2 A;  4IU6 A;  1C22 A;  1KQ0 A;  1XGM A;  2EVC A;  3RVA A;  4IKT A;  2GU6 A;  2B3H A;  3MAT A;  1M35 A;  2NQ7 A;  5D6E A;  4A6W A;  2GZ5 A;  4U6Z A;  1MAT A;  4IKR A;  4Z7M A;  1KP0 A;  4FKC A;  3TB5 A;  2OAZ A;  3TAV A;  1R5H A;  2Q92 A;  1XGN A;  5CDV A;  4KM3 A;  1XNZ A;  1Y1N A;  4S2R P;  5FCF A;  4U6J A;  1R58 A;  2G6P A;  2GG0 A;  3PKC A;  4IKS A;  1WL9 A;  4EGE A;  2ZSG A;  5CNX A;  4RGZ 1;  3BIT A;  2GG9 A;  3Q6D A;  4ZWU A;  1B6A A;  4HXX A;  4U1B A;  1QXW A;  2GGB A;  2BWT A;  1XGS A;  2BWU A;  1W2M A;  3IU7 A;  2P98 A;  5JFR A;  2GTX A;  2GG7 A;  3L7G A;  4IPA A;  3BIQ A;  3PKB A;  2GA2 A;  2EVO A;  2IW2 A;  2GU5 A;  2V6C A;  4RZZ A;  1YVM A;  4PNC A; 
#chains in the Genus database with same CATH homology
 5E5B A;  1YW9 A;  1YW8 A;  5CLS A;  2BWY A;  4IDY A;  2BWW A;  1C23 A;  2B3L A;  2Q93 A;  4A6V A;  3FMQ A;  1C27 A;  1WN1 A;  4S01 A;  1WY2 A;  4B28 A;  2GG8 A;  1WL6 A;  2EA4 A;  4RZY A;  1BOA A;  2GGC A;  3FMR A;  2EA2 A;  4FO7 A;  2GU7 A;  4IEC A;  3CB5 A;  3IU9 A;  4U6W A;  3L24 A;  3CTZ A;  4U73 A;  2EVM A;  3ROR A;  3D27 A;  4PV4 A;  3FM3 A;  4ZNG A;  4FLJ A;  4FO8 A;  2BWX A;  2GG5 A;  5JI6 A;  2MAT A;  2P9A A;  4U69 A;  1B59 A;  5FCH A;  2P99 A;  1R5G A;  1QXZ A;  5CDL A;  1WKM A;  1QZY A;  3S6B A;  5JHU A;  2V3Y A;  4U70 A;  4OOK A;  2V3Z A;  2OKN A;  5CDE A;  3CB6 A;  2V3X A;  5CIK A;  2NQ6 A;  2B3K A;  4S2T P;  1C21 A;  4ZWO A;  2Q94 A;  4S00 A;  1A16 A;  3MX6 A;  1JAW A;  1WBQ A;  1QXY A;  1WLR A;  3MR1 A;  4U6E A;  2BHC A;  4FLL A;  4U75 A;  3PKD A;  2BH3 A;  5D6F A;  4JUQ A;  2BB7 A;  2GG3 A;  4QR8 A;  1BN5 A;  2Q96 A;  4ZWP A;  4R60 A;  3PKE A;  2Q8K A;  1W7V A;  1N51 A;  4U6C A;  1C24 A;  2BN7 A;  4U71 A;  4FUK A;  2HOW A;  4IKU A;  3IU8 A;  1YW7 A;  3IG4 A;  4U76 A;  4FLK A;  2BHD A;  4MAT A;  1CHM A;  1O0X A;  2BWV A;  2Q95 A;  1XGO A;  2BWS A;  2GU4 A;  1KQ9 A;  1YJ3 A;  2DFI A;  2ADU A;  3BIP A;  2BHB A;  4FLI A;  2BHA A;  1PV9 A;  3PKA A;  4IF7 A;  5CE6 A;  2GG2 A;  4IU6 A;  1C22 A;  1KQ0 A;  1XGM A;  2EVC A;  3RVA A;  4IKT A;  2GU6 A;  2B3H A;  3MAT A;  1M35 A;  2NQ7 A;  5D6E A;  4A6W A;  2GZ5 A;  4U6Z A;  1MAT A;  4IKR A;  4Z7M A;  1KP0 A;  4FKC A;  3TB5 A;  2OAZ A;  3TAV A;  1R5H A;  2Q92 A;  1XGN A;  5CDV A;  4KM3 A;  1XNZ A;  1Y1N A;  4S2R P;  5FCF A;  4U6J A;  1R58 A;  2G6P A;  2GG0 A;  3PKC A;  4IKS A;  1WL9 A;  4EGE A;  2ZSG A;  5CNX A;  4RGZ 1;  3BIT A;  2GG9 A;  3Q6D A;  4ZWU A;  1B6A A;  4HXX A;  4U1B A;  1QXW A;  2GGB A;  2BWT A;  1XGS A;  2BWU A;  1W2M A;  3IU7 A;  2P98 A;  5JFR A;  2GTX A;  2GG7 A;  3L7G A;  4IPA A;  3BIQ A;  3PKB A;  2GA2 A;  2EVO A;  2IW2 A;  2GU5 A;  2V6C A;  4RZZ A;  1YVM A;  4PNC A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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