1Y21A

Crystal structure of cimex nitrophorin no complex
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
280
structure length
280
Chain Sequence
PPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligand binding protein
molecule keywords salivary nitrophorin
publication title Heme-assisted S-nitrosation of a proximal thiolate in a nitric oxide transport protein.
pubmed doi rcsb
source organism Cimex lectularius
total genus 82
structure length 280
sequence length 280
ec nomenclature
pdb deposition date 2004-11-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 1y21A00
1I9ZA 4PUQA 5INMA 1I9YA 3G0AA 4QH9A 4B5MA 3FZIA 3W3DB 1E9NA 3MTCA 5EWTA 1NTFA 5A7JA 4IEMA 3DNIA 4B5FA 4F1HB 1AKOA 3I48A 2O3CA 2IMQX 4B5JA 3NGQA 5J8NA 5INPA 1WDUA 4GYZA 2XSWA 3G4TA 5J3SA 3NGOA 3G2CA 4RUWA 3W2YA 4B5HA 2V0RA 4F1RA 3G00A 5DG0A 3MPRA 5DV4A 4B5IA 4FVAA 5DFJA 3WCXA 2VOAA 1SR4B 1YJHA 3I5VA 1ATND 4JG3A 3TEBA 1BIXA 3CJCD 3L1WA 3G91A 2A40B 2F2FB 2DNJA 2F1NA 1Y21A 5CFEA 5J42A 3I46A 4GZ0A 1DEWA 1DE9A 5J3ZA 3G3CA 4B5GA 5DFIA 5DFFA 4CMLA 4GZ2A 4F1IA 3I41A 4AWNA 5DFHA 4K6LF 3N9VA 2O3HA 3U8UA 4LNDA 1DNKA 2A42B 2J63A 2ISIA 3GA6A 3G1KA 4QHDA 3G0RA 3G3YA 5HT2A 4F1HA 1DE8A 4CMNA 5CFGA 4A9CA 3G6SA 5DV2A 4L21A 2JC5A 1SI6X 5INLA 2A3ZB 4GEWA 3NR8A 3G8VA 2EI9A 1ZWXA 2UYRX 1VYBA 2V0SA 2D1KB 4QHEA 4FPVA 3NGNA 4L20A 4C1RA 4L1ZA 4GZ1A 3G2DA 1HD7A 5J3PA 5INQA 4L1YA 2DDRA 2A41B 5A7IA 3W2XA 5INKA 2DDSA 3G38A 3K55A 5INOA 2DDTA 5INNA 2JC4A
chains in the Genus database with same CATH superfamily
1I9ZA 4PUQA 5INMA 1I9YA 3G0AA 4QH9A 4B5MA 3FZIA 3W3DB 1E9NA 3MTCA 5EWTA 1NTFA 5A7JA 4IEMA 3DNIA 4B5FA 4F1HB 1AKOA 3I48A 2O3CA 2IMQX 4B5JA 3NGQA 5J8NA 5INPA 1WDUA 4GYZA 2XSWA 3G4TA 5J3SA 3NGOA 3G2CA 4RUWA 3W2YA 4B5HA 2V0RA 4F1RA 3G00A 5DG0A 3MPRA 5DV4A 4B5IA 4FVAA 5DFJA 3WCXA 2VOAA 1SR4B 1YJHA 3I5VA 1ATND 4JG3A 3TEBA 1BIXA 3CJCD 3L1WA 3G91A 2A40B 2F2FB 2DNJA 2F1NA 1Y21A 5CFEA 5J42A 3I46A 4GZ0A 1DEWA 1DE9A 5J3ZA 3G3CA 4B5GA 5DFIA 5DFFA 4CMLA 4GZ2A 4F1IA 3I41A 4AWNA 5DFHA 4K6LF 3N9VA 2O3HA 3U8UA 4LNDA 1DNKA 2A42B 2J63A 2ISIA 3GA6A 3G1KA 4QHDA 3G0RA 3G3YA 5HT2A 4F1HA 1DE8A 4CMNA 5CFGA 4A9CA 3G6SA 5DV2A 4L21A 2JC5A 1SI6X 5INLA 2A3ZB 4GEWA 3NR8A 3G8VA 2EI9A 1ZWXA 2UYRX 1VYBA 2V0SA 2D1KB 4QHEA 4FPVA 3NGNA 4L20A 4C1RA 4L1ZA 4GZ1A 3G2DA 1HD7A 5J3PA 5INQA 4L1YA 2DDRA 2A41B 5A7IA 3W2XA 5INKA 2DDSA 3G38A 3K55A 5INOA 2DDTA 5INNA 2JC4A
chains in the Genus database with same CATH topology
1I9ZA 4PUQA 5INMA 1I9YA 3G0AA 4QH9A 4B5MA 3FZIA 3W3DB 1E9NA 3MTCA 5EWTA 1NTFA 5A7JA 4IEMA 3DNIA 4B5FA 4F1HB 1AKOA 3I48A 2O3CA 2IMQX 4B5JA 3NGQA 5J8NA 5INPA 1WDUA 4GYZA 2XSWA 3G4TA 5J3SA 3NGOA 3G2CA 4RUWA 3W2YA 4B5HA 2V0RA 4F1RA 3G00A 5DG0A 3MPRA 5DV4A 4B5IA 4FVAA 5DFJA 3WCXA 2VOAA 1SR4B 1YJHA 3I5VA 1ATND 4JG3A 3TEBA 1BIXA 3CJCD 3L1WA 3G91A 2A40B 2F2FB 2DNJA 2F1NA 1Y21A 5CFEA 5J42A 3I46A 4GZ0A 1DEWA 1DE9A 5J3ZA 3G3CA 4B5GA 5DFIA 5DFFA 4CMLA 4GZ2A 4F1IA 3I41A 4AWNA 5DFHA 4K6LF 3N9VA 2O3HA 3U8UA 4LNDA 1DNKA 2A42B 2J63A 2ISIA 3GA6A 3G1KA 4QHDA 3G0RA 3G3YA 5HT2A 4F1HA 1DE8A 4CMNA 5CFGA 4A9CA 3G6SA 5DV2A 4L21A 2JC5A 1SI6X 5INLA 2A3ZB 4GEWA 3NR8A 3G8VA 2EI9A 1ZWXA 2UYRX 1VYBA 2V0SA 2D1KB 4QHEA 4FPVA 3NGNA 4L20A 4C1RA 4L1ZA 4GZ1A 3G2DA 1HD7A 5J3PA 5INQA 4L1YA 2DDRA 2A41B 5A7IA 3W2XA 5INKA 2DDSA 3G38A 3K55A 5INOA 2DDTA 5INNA 2JC4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I9Z A;  4PUQ A;  5INM A;  1I9Y A;  3G0A A;  4QH9 A;  4B5M A;  3FZI A;  3W3D B;  1E9N A;  3MTC A;  5EWT A;  1NTF A;  5A7J A;  4IEM A;  3DNI A;  4B5F A;  4F1H B;  1AKO A;  3I48 A;  2O3C A;  2IMQ X;  4B5J A;  3NGQ A;  5J8N A;  5INP A;  1WDU A;  4GYZ A;  2XSW A;  3G4T A;  5J3S A;  3NGO A;  3G2C A;  4RUW A;  3W2Y A;  4B5H A;  2V0R A;  4F1R A;  3G00 A;  5DG0 A;  3MPR A;  5DV4 A;  4B5I A;  4FVA A;  5DFJ A;  3WCX A;  2VOA A;  1SR4 B;  1YJH A;  3I5V A;  1ATN D;  4JG3 A;  3TEB A;  1BIX A;  3CJC D;  3L1W A;  3G91 A;  2A40 B;  2F2F B;  2DNJ A;  2F1N A;  1Y21 A;  5CFE A;  5J42 A;  3I46 A;  4GZ0 A;  1DEW A;  1DE9 A;  5J3Z A;  3G3C A;  4B5G A;  5DFI A;  5DFF A;  4CML A;  4GZ2 A;  4F1I A;  3I41 A;  4AWN A;  5DFH A;  4K6L F;  3N9V A;  2O3H A;  3U8U A;  4LND A;  1DNK A;  2A42 B;  2J63 A;  2ISI A;  3GA6 A;  3G1K A;  4QHD A;  3G0R A;  3G3Y A;  5HT2 A;  4F1H A;  1DE8 A;  4CMN A;  5CFG A;  4A9C A;  3G6S A;  5DV2 A;  4L21 A;  2JC5 A;  1SI6 X;  5INL A;  2A3Z B;  4GEW A;  3NR8 A;  3G8V A;  2EI9 A;  1ZWX A;  2UYR X;  1VYB A;  2V0S A;  2D1K B;  4QHE A;  4FPV A;  3NGN A;  4L20 A;  4C1R A;  4L1Z A;  4GZ1 A;  3G2D A;  1HD7 A;  5J3P A;  5INQ A;  4L1Y A;  2DDR A;  2A41 B;  5A7I A;  3W2X A;  5INK A;  2DDS A;  3G38 A;  3K55 A;  5INO A;  2DDT A;  5INN A;  2JC4 A; 
#chains in the Genus database with same CATH topology
 1I9Z A;  4PUQ A;  5INM A;  1I9Y A;  3G0A A;  4QH9 A;  4B5M A;  3FZI A;  3W3D B;  1E9N A;  3MTC A;  5EWT A;  1NTF A;  5A7J A;  4IEM A;  3DNI A;  4B5F A;  4F1H B;  1AKO A;  3I48 A;  2O3C A;  2IMQ X;  4B5J A;  3NGQ A;  5J8N A;  5INP A;  1WDU A;  4GYZ A;  2XSW A;  3G4T A;  5J3S A;  3NGO A;  3G2C A;  4RUW A;  3W2Y A;  4B5H A;  2V0R A;  4F1R A;  3G00 A;  5DG0 A;  3MPR A;  5DV4 A;  4B5I A;  4FVA A;  5DFJ A;  3WCX A;  2VOA A;  1SR4 B;  1YJH A;  3I5V A;  1ATN D;  4JG3 A;  3TEB A;  1BIX A;  3CJC D;  3L1W A;  3G91 A;  2A40 B;  2F2F B;  2DNJ A;  2F1N A;  1Y21 A;  5CFE A;  5J42 A;  3I46 A;  4GZ0 A;  1DEW A;  1DE9 A;  5J3Z A;  3G3C A;  4B5G A;  5DFI A;  5DFF A;  4CML A;  4GZ2 A;  4F1I A;  3I41 A;  4AWN A;  5DFH A;  4K6L F;  3N9V A;  2O3H A;  3U8U A;  4LND A;  1DNK A;  2A42 B;  2J63 A;  2ISI A;  3GA6 A;  3G1K A;  4QHD A;  3G0R A;  3G3Y A;  5HT2 A;  4F1H A;  1DE8 A;  4CMN A;  5CFG A;  4A9C A;  3G6S A;  5DV2 A;  4L21 A;  2JC5 A;  1SI6 X;  5INL A;  2A3Z B;  4GEW A;  3NR8 A;  3G8V A;  2EI9 A;  1ZWX A;  2UYR X;  1VYB A;  2V0S A;  2D1K B;  4QHE A;  4FPV A;  3NGN A;  4L20 A;  4C1R A;  4L1Z A;  4GZ1 A;  3G2D A;  1HD7 A;  5J3P A;  5INQ A;  4L1Y A;  2DDR A;  2A41 B;  5A7I A;  3W2X A;  5INK A;  2DDS A;  3G38 A;  3K55 A;  5INO A;  2DDT A;  5INN A;  2JC4 A; 
#chains in the Genus database with same CATH homology
 1I9Z A;  4PUQ A;  5INM A;  1I9Y A;  3G0A A;  4QH9 A;  4B5M A;  3FZI A;  3W3D B;  1E9N A;  3MTC A;  5EWT A;  1NTF A;  5A7J A;  4IEM A;  3DNI A;  4B5F A;  4F1H B;  1AKO A;  3I48 A;  2O3C A;  2IMQ X;  4B5J A;  3NGQ A;  5J8N A;  5INP A;  1WDU A;  4GYZ A;  2XSW A;  3G4T A;  5J3S A;  3NGO A;  3G2C A;  4RUW A;  3W2Y A;  4B5H A;  2V0R A;  4F1R A;  3G00 A;  5DG0 A;  3MPR A;  5DV4 A;  4B5I A;  4FVA A;  5DFJ A;  3WCX A;  2VOA A;  1SR4 B;  1YJH A;  3I5V A;  1ATN D;  4JG3 A;  3TEB A;  1BIX A;  3CJC D;  3L1W A;  3G91 A;  2A40 B;  2F2F B;  2DNJ A;  2F1N A;  1Y21 A;  5CFE A;  5J42 A;  3I46 A;  4GZ0 A;  1DEW A;  1DE9 A;  5J3Z A;  3G3C A;  4B5G A;  5DFI A;  5DFF A;  4CML A;  4GZ2 A;  4F1I A;  3I41 A;  4AWN A;  5DFH A;  4K6L F;  3N9V A;  2O3H A;  3U8U A;  4LND A;  1DNK A;  2A42 B;  2J63 A;  2ISI A;  3GA6 A;  3G1K A;  4QHD A;  3G0R A;  3G3Y A;  5HT2 A;  4F1H A;  1DE8 A;  4CMN A;  5CFG A;  4A9C A;  3G6S A;  5DV2 A;  4L21 A;  2JC5 A;  1SI6 X;  5INL A;  2A3Z B;  4GEW A;  3NR8 A;  3G8V A;  2EI9 A;  1ZWX A;  2UYR X;  1VYB A;  2V0S A;  2D1K B;  4QHE A;  4FPV A;  3NGN A;  4L20 A;  4C1R A;  4L1Z A;  4GZ1 A;  3G2D A;  1HD7 A;  5J3P A;  5INQ A;  4L1Y A;  2DDR A;  2A41 B;  5A7I A;  3W2X A;  5INK A;  2DDS A;  3G38 A;  3K55 A;  5INO A;  2DDT A;  5INN A;  2JC4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...