1Y23A

Crystal structure of a member of hit family of proteins from bacillus subtilis
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
139
structure length
139
Chain Sequence
ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Histidine triad protein
publication title Crystal structure of a member of HIT family of proteins from bacillus subtilis
rcsb
source organism Bacillus subtilis
total genus 34
structure length 139
sequence length 139
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2004-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1y23A00
4NJZA 3I24A 1ST0A 2Q4HA 3N1TA 1EMSA 5FITA 4INIA 5IPCA 3QGZA 3OHEA 2EO4A 4XBAA 3BLAA 3I4SA 6RHNA 4RHNA 2Q4LA 3OJ7A 4EQHA 2FHIA 3SPLA 4NDHA 5I2EA 3O0MA 4QDEA 5I2FA 5IN3A 1Z84A 4EQEA 4NDIA 5CS2A 5BV3A 5IPBA 4ZKLA 3WO5A 1FITA 3OMFA 5IPDA 5ED3A 3NRDA 1AV5A 3BL9A 1KPEA 4INCA 4NDGA 3O1CA 1RZYA 3BL7A 3ANOA 6FITA 3SZQA 4NJYA 1XMMA 3P0TA 3OXKA 3SP4A 4NJXA 1VLRA 4EQGA 4ZGLA 3L7XA 3O1ZA 1ST4A 3O1XA 1HXQA 1HXPA 5IPEA 4NDFA 3FITA 5ED6A 3R6FA 5EMTA 1ZWJA 1GUPA 4EGUA 4ZKVA 3LB5A 3TW2A 4FITA 4YKLB 1FHIA 1KPFA 2H39A 2OIKA 3N1SA 3KSVA 4QDVA 1KPAA 3IMIA 1KPBA 3SPDA 1Y23A 1XMLA 2FITA 3RHNA 5RHNA 1KPCA 4QEBA 1GUQA 4NK0A
chains in the Genus database with same CATH superfamily
4NJZA 3I24A 4I5VA 1ST0A 4G0AA 2Q4HA 3N1TA 1EMSA 5FITA 4INIA 5IPCA 2R8FA 4G0JA 3QGZA 3OHEA 2EO4A 4XBAA 2R7JA 3BLAA 3I4SA 2LJWA 4RHNA 6RHNA 2Q4LA 3OJ7A 4EQHA 2FHIA 4I5TA 3SPLA 4NDHA 5I2EA 3O0MA 4QDEA 5I2FA 5IN3A 1Z84A 4EQEA 4NDIA 5CS2A 2R7CA 5BV3A 5IPBA 4ZKLA 4I5WA 3WO5A 1FITA 3OMFA 5IPDA 5ED3A 3NRDA 1AV5A 3BL9A 1KPEA 4INCA 4NDGA 3O1CA 1RZYA 3BL7A 3ANOA 6FITA 3SZQA 4NJYA 1XMMA 3P0TA 3OXKA 2POFA 3SP4A 4NJXA 1VLRA 4EQGA 4ZGLA 3L7XA 3O1ZA 1ST4A 3O1XA 1HXQA 1HXPA 5IPEA 4NDFA 3FITA 5ED6A 3R6FA 1L9VA 5EMTA 1ZWJA 1GUPA 4EGUA 4ZKVA 3LB5A 3TW2A 4FITA 4YKLB 1FHIA 1KPFA 2H39A 2OIKA 3N1SA 3KSVA 4QDVA 1KPAA 3IMIA 1KPBA 3SPDA 2GU0A 1Y23A 2R7PA 1XMLA 2FITA 3RHNA 5RHNA 1KPCA 4QEBA 1GUQA 4NK0A
chains in the Genus database with same CATH topology
4NJZA 3I24A 1ST0A 2Q4HA 3N1TA 1EMSA 5FITA 4INIA 5IPCA 3QGZA 3OHEA 2EO4A 4XBAA 3BLAA 3I4SA 6RHNA 4RHNA 2Q4LA 3OJ7A 4EQHA 2FHIA 3SPLA 4NDHA 5I2EA 3O0MA 4QDEA 5I2FA 5IN3A 1Z84A 4EQEA 4NDIA 5CS2A 5BV3A 5IPBA 4ZKLA 3WO5A 1FITA 3OMFA 5IPDA 5ED3A 3NRDA 1AV5A 3BL9A 1KPEA 4INCA 4NDGA 3O1CA 1RZYA 3BL7A 3ANOA 6FITA 3SZQA 4NJYA 1XMMA 3P0TA 3OXKA 3SP4A 4NJXA 1VLRA 4EQGA 4ZGLA 3L7XA 3O1ZA 1ST4A 3O1XA 1HXQA 1HXPA 5IPEA 4NDFA 3FITA 5ED6A 3R6FA 5EMTA 1ZWJA 1GUPA 4EGUA 4ZKVA 3LB5A 3TW2A 4FITA 4YKLB 1FHIA 1KPFA 2H39A 2OIKA 3N1SA 3KSVA 4QDVA 1KPAA 3IMIA 1KPBA 3SPDA 1Y23A 1XMLA 2FITA 3RHNA 5RHNA 1KPCA 4QEBA 1GUQA 4NK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NJZ A;  3I24 A;  1ST0 A;  2Q4H A;  3N1T A;  1EMS A;  5FIT A;  4INI A;  5IPC A;  3QGZ A;  3OHE A;  2EO4 A;  4XBA A;  3BLA A;  3I4S A;  6RHN A;  4RHN A;  2Q4L A;  3OJ7 A;  4EQH A;  2FHI A;  3SPL A;  4NDH A;  5I2E A;  3O0M A;  4QDE A;  5I2F A;  5IN3 A;  1Z84 A;  4EQE A;  4NDI A;  5CS2 A;  5BV3 A;  5IPB A;  4ZKL A;  3WO5 A;  1FIT A;  3OMF A;  5IPD A;  5ED3 A;  3NRD A;  1AV5 A;  3BL9 A;  1KPE A;  4INC A;  4NDG A;  3O1C A;  1RZY A;  3BL7 A;  3ANO A;  6FIT A;  3SZQ A;  4NJY A;  1XMM A;  3P0T A;  3OXK A;  3SP4 A;  4NJX A;  1VLR A;  4EQG A;  4ZGL A;  3L7X A;  3O1Z A;  1ST4 A;  3O1X A;  1HXQ A;  1HXP A;  5IPE A;  4NDF A;  3FIT A;  5ED6 A;  3R6F A;  5EMT A;  1ZWJ A;  1GUP A;  4EGU A;  4ZKV A;  3LB5 A;  3TW2 A;  4FIT A;  4YKL B;  1FHI A;  1KPF A;  2H39 A;  2OIK A;  3N1S A;  3KSV A;  4QDV A;  1KPA A;  3IMI A;  1KPB A;  3SPD A;  1Y23 A;  1XML A;  2FIT A;  3RHN A;  5RHN A;  1KPC A;  4QEB A;  1GUQ A;  4NK0 A; 
#chains in the Genus database with same CATH topology
 4NJZ A;  3I24 A;  4I5V A;  1ST0 A;  4G0A A;  2Q4H A;  3N1T A;  1EMS A;  5FIT A;  4INI A;  5IPC A;  2R8F A;  4G0J A;  3QGZ A;  3OHE A;  2EO4 A;  4XBA A;  2R7J A;  3BLA A;  3I4S A;  2LJW A;  4RHN A;  6RHN A;  2Q4L A;  3OJ7 A;  4EQH A;  2FHI A;  4I5T A;  3SPL A;  4NDH A;  5I2E A;  3O0M A;  4QDE A;  5I2F A;  5IN3 A;  1Z84 A;  4EQE A;  4NDI A;  5CS2 A;  2R7C A;  5BV3 A;  5IPB A;  4ZKL A;  4I5W A;  3WO5 A;  1FIT A;  3OMF A;  5IPD A;  5ED3 A;  3NRD A;  1AV5 A;  3BL9 A;  1KPE A;  4INC A;  4NDG A;  3O1C A;  1RZY A;  3BL7 A;  3ANO A;  6FIT A;  3SZQ A;  4NJY A;  1XMM A;  3P0T A;  3OXK A;  2POF A;  3SP4 A;  4NJX A;  1VLR A;  4EQG A;  4ZGL A;  3L7X A;  3O1Z A;  1ST4 A;  3O1X A;  1HXQ A;  1HXP A;  5IPE A;  4NDF A;  3FIT A;  5ED6 A;  3R6F A;  1L9V A;  5EMT A;  1ZWJ A;  1GUP A;  4EGU A;  4ZKV A;  3LB5 A;  3TW2 A;  4FIT A;  4YKL B;  1FHI A;  1KPF A;  2H39 A;  2OIK A;  3N1S A;  3KSV A;  4QDV A;  1KPA A;  3IMI A;  1KPB A;  3SPD A;  2GU0 A;  1Y23 A;  2R7P A;  1XML A;  2FIT A;  3RHN A;  5RHN A;  1KPC A;  4QEB A;  1GUQ A;  4NK0 A; 
#chains in the Genus database with same CATH homology
 4NJZ A;  3I24 A;  1ST0 A;  2Q4H A;  3N1T A;  1EMS A;  5FIT A;  4INI A;  5IPC A;  3QGZ A;  3OHE A;  2EO4 A;  4XBA A;  3BLA A;  3I4S A;  6RHN A;  4RHN A;  2Q4L A;  3OJ7 A;  4EQH A;  2FHI A;  3SPL A;  4NDH A;  5I2E A;  3O0M A;  4QDE A;  5I2F A;  5IN3 A;  1Z84 A;  4EQE A;  4NDI A;  5CS2 A;  5BV3 A;  5IPB A;  4ZKL A;  3WO5 A;  1FIT A;  3OMF A;  5IPD A;  5ED3 A;  3NRD A;  1AV5 A;  3BL9 A;  1KPE A;  4INC A;  4NDG A;  3O1C A;  1RZY A;  3BL7 A;  3ANO A;  6FIT A;  3SZQ A;  4NJY A;  1XMM A;  3P0T A;  3OXK A;  3SP4 A;  4NJX A;  1VLR A;  4EQG A;  4ZGL A;  3L7X A;  3O1Z A;  1ST4 A;  3O1X A;  1HXQ A;  1HXP A;  5IPE A;  4NDF A;  3FIT A;  5ED6 A;  3R6F A;  5EMT A;  1ZWJ A;  1GUP A;  4EGU A;  4ZKV A;  3LB5 A;  3TW2 A;  4FIT A;  4YKL B;  1FHI A;  1KPF A;  2H39 A;  2OIK A;  3N1S A;  3KSV A;  4QDV A;  1KPA A;  3IMI A;  1KPB A;  3SPD A;  1Y23 A;  1XML A;  2FIT A;  3RHN A;  5RHN A;  1KPC A;  4QEB A;  1GUQ A;  4NK0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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