1Y2IA

Crystal structure of mcsg target apc27401 from shigella flexneri
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
109
structure length
109
Chain Sequence
MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRRNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical Protein S0862
publication title Crystal Structure of MCSG Target APC27401 from Shigella flexneri
rcsb
source organism Shigella flexneri 2a str. 2457t
total genus 24
structure length 109
sequence length 109
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2004-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01906 YbjQ_1 Putative heavy-metal-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.70 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Hypothetical protein apc22750. Chain B 1y2iA00
3QKBA 2L8YA 1VR4A 2GTCA 2Y1BA 1Y2IA
chains in the Genus database with same CATH superfamily
3VTHA 4K87A 1DCJA 1VM0A 2H9UA 2BKYX 1H4SA 3TSUA 1UDVA 4HVCA 1S8EA 3TTCA 3DSCA 2LN3A 1RQ8A 2Y1BA 1NJ6A 4FBQA 3TSQA 1TIGA 3TOEA 3VTIA 4FBWA 4NZRM 2Q3VA 1H4QA 3U6YA 1VR4A 3IABA 1NFJA 3DSDA 2L8YA 3P04A 3WBMA 3LVJC 3ZIIA 2IFEA 3T1IA 3ZIGA 1NJ1A 4FBKA 1H4TA 3TTDA 4YKEA 2EK0A 1II7A 2GTCA 1H0XA 3QKBA 1Y9XA 3IALA 4NZTM 3LVKB 3TTFA 1JDQA 1Y2IA 3HZ7A 4TWAA 1XEZA 1NJ2A 1LN4A 3IABB 4EO0A 1H0YA 3ZIEA 2CRQA 4OLFA 4NCXA 3ZIHA 1HC7A 1NH9A 4Z9EA 2Z7CA 3TSPA 1NFHA 1NJ8A 4HVZA 2LXRA 2P9BA 4WI1A 2EH1A 4HD0A 1JE3A 4Q15A 4K88A 1NJ5A 1PAVA 1JO0A 4K86A 4FCXA 4YDQA 2A2YA 2M71A
chains in the Genus database with same CATH topology
3QKBA 2L8YA 1VR4A 2GTCA 2Y1BA 1Y2IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QKB A;  2L8Y A;  1VR4 A;  2GTC A;  2Y1B A;  1Y2I A; 
#chains in the Genus database with same CATH topology
 3VTH A;  4K87 A;  1DCJ A;  1VM0 A;  2H9U A;  2BKY X;  1H4S A;  3TSU A;  1UDV A;  4HVC A;  1S8E A;  3TTC A;  3DSC A;  2LN3 A;  1RQ8 A;  2Y1B A;  1NJ6 A;  4FBQ A;  3TSQ A;  1TIG A;  3TOE A;  3VTI A;  4FBW A;  4NZR M;  2Q3V A;  1H4Q A;  3U6Y A;  1VR4 A;  3IAB A;  1NFJ A;  3DSD A;  2L8Y A;  3P04 A;  3WBM A;  3LVJ C;  3ZII A;  2IFE A;  3T1I A;  3ZIG A;  1NJ1 A;  4FBK A;  1H4T A;  3TTD A;  4YKE A;  2EK0 A;  1II7 A;  2GTC A;  1H0X A;  3QKB A;  1Y9X A;  3IAL A;  4NZT M;  3LVK B;  3TTF A;  1JDQ A;  1Y2I A;  3HZ7 A;  4TWA A;  1XEZ A;  1NJ2 A;  1LN4 A;  3IAB B;  4EO0 A;  1H0Y A;  3ZIE A;  2CRQ A;  4OLF A;  4NCX A;  3ZIH A;  1HC7 A;  1NH9 A;  4Z9E A;  2Z7C A;  3TSP A;  1NFH A;  1NJ8 A;  4HVZ A;  2LXR A;  2P9B A;  4WI1 A;  2EH1 A;  4HD0 A;  1JE3 A;  4Q15 A;  4K88 A;  1NJ5 A;  1PAV A;  1JO0 A;  4K86 A;  4FCX A;  4YDQ A;  2A2Y A;  2M71 A; 
#chains in the Genus database with same CATH homology
 3QKB A;  2L8Y A;  1VR4 A;  2GTC A;  2Y1B A;  1Y2I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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