The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
168
|
structure length |
168
|
Chain Sequence |
AKITKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTSLLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPKASVVTEQRKSATHPFAAN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
How an enzyme binds the C1-carrier tetrahydromethanopterin: Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1
pubmed doi rcsb |
| molecule keywords |
Formaldehyde-activating enzyme fae
|
| molecule tags |
Lyase
|
| source organism |
Methylobacterium extorquens
|
| total genus |
52
|
| structure length |
168
|
| sequence length |
168
|
| chains with identical sequence |
B, C, D, E
|
| ec nomenclature |
ec
4.2.1.147: 5,6,7,8-tetrahydromethanopterin hydro-lyase. |
| pdb deposition date | 2004-12-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08714 | Fae | Formaldehyde-activating enzyme (Fae) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5; domain 2 | Formaldehyde-activating enzyme |
#chains in the Genus database with same CATH superfamily 1Y5Y A; 1Y60 A; #chains in the Genus database with same CATH topology 1ELO A; 3JAM C; 1J5E I; 4MU3 A; 4DUY E; 2NN6 B; 1NHJ A; 4LF4 I; 4B3R I; 2VES A; 4DV3 I; 5FLX Q; 2C39 A; 1DAR A; 1XNR E; 1FKA E; 2NN6 D; 4UTG A; 5BR8 E; 1IBM E; 4KHP I; 3Q6N A; 4IZK A; 2GS8 A; 3P76 A; 4DU7 A; 1P42 A; 2Z5C A; 2GQ0 A; 5LMN E; 4WUB A; 1Z5C A; 4JI5 I; 1NHI A; 1E3P A; 3HJC A; 4AIM A; 4KQV A; 2BA0 G; 4FW4 A; 1H73 A; 4X65 I; 3PYD A; 3P06 A; 4NXN E; 2E5L E; 1QZR A; 3L7Z A; 1Y4U A; 4M1K A; 1IBL E; 1UEK A; 2NPF A; 2IES A; 5LL6 R; 4OO1 B; 2JEA B; 2Z5E A; 3P3E A; 1A6F A; 3PRY A; 3QT7 A; 2VQE E; 2V8P A; 3WU5 A; 5IWA E; 2UXB E; 2IER A; 4K0K I; 4DV0 I; 4GKK I; 1Z0W A; 1N36 E; 4OO1 D; 4FW9 A; 4FWG A; 3B78 A; 4DR2 E; 1Z0C A; 4DR1 I; 4DV1 E; 1UDS A; 1Y6Z A; 4BA1 A; 4B3S I; 2O3Z A; 2O1T A; 4LFB E; 1R6M A; 2R42 A; 2AJ4 A; 4OX9 E; 3GLL A; 2IOP A; 3WU3 A; 4IFD F; 2UUC I; 5LMU E; 1XNQ I; 2UU9 E; 4URL A; 4YY3 I; 3NZK A; 1Z0T A; 1S16 A; 2XEX A; 1NHH A; 4BA2 B; 4IFD C; 4DV6 I; 5ELW A; 1N34 E; 3ZZ0 A; 2J65 A; 1FWL A; 4LOM A; 2C37 B; 4DR3 I; 2BA0 D; 2DEI A; 3T1H E; 1OYR A; 1OYS A; 2BA1 G; 2EFG A; 5JEA F; 3J80 Q; 2PO1 A; 2JT2 A; 4B3M I; 3U1K A; 4DR7 I; 4DR5 E; 3K17 A; 4LF9 E; 5FLX C; 2PO2 A; 2UUA I; 4PRX A; 4DV7 E; 2DEJ A; 1FJG E; 1YHC A; 2O1W A; 2HFS A; 3CDI A; 4LFA I; 4RPF A; 1E3H A; 4AM3 A; 1PVG A; 4JI1 E; 1XMO E; 1IBK I; 3PS3 A; 4JI3 E; 4JI2 E; 2NN6 C; 1N33 E; 4HXZ A; 2HHH E; 4LF5 I; 2HKJ A; 4DUZ I; 1D6T A; 1XMQ I; 4MU4 A; 1Z0V A; 1NZ0 A; 2WNR A; 4IFD A; 2CGE A; 1HR0 I; 4FN5 A; 3P3G A; 1Y4S A; 3PS1 A; 2C38 B; 4DV2 I; 1Z5B A; 3B4T A; 3B82 A; 1Y5Y A; 4FWD A; 2V34 A; 1MG7 A; 2BA1 D; 2AE8 A; 1USU A; 2PO0 B; 1N0U A; 4IZJ B; 5C0X B; 4HAC A; 4LF7 E; 2V2Z A; 2X7I A; 4MDT A; 2BM1 A; 3CDJ A; 4LF6 I; 4JYA E; 4OO1 C; 4YHH E; 4X62 E; 5JEA A; 3DD6 A; 4LCH A; 4DV6 E; 3K1J A; 2NN6 E; 4IZJ D; 4DPX A; 5C0X D; 4X66 I; 2PNZ A; 4JI4 I; 4Z7Y A; 1Y60 A; 4DV5 I; 4JI8 I; 2UXC E; 2R3V A; 1H72 C; 1HK7 A; 2JE6 B; 5DRQ A; 3HKM A; 4WUD A; 2NN6 A; 1H7U A; 1HNW E; 2HK2 A; 1H74 A; 1EI1 A; 1FWK A; 4GKJ I; 5EKW A; 3ZKB A; 3K85 A; 2X36 A; 4GQU A; 4R1F A; 4MQY A; 2HKE A; 1VIS A; 4QNJ A; 1B63 A; 4JI6 I; 1Z5A A; 4DXL A; 1I94 I; 4NXM I; 2F4V I; 4X64 I; 2Z5B B; 2UUB E; 1BKN A; 2F1D A; 5K36 B; 1HNX E; 2UXD I; 1HNZ I; 4DV4 I; 2BR2 B; 2ZM6 I; 4U3D A; 4JI0 I; 4OO1 E; 1PIE A; 3T1Y E; 5K36 E; 1KKH A; 1VI7 A; 3M6A A; 5K36 D; 4LCG A; 2JEA A; 2A2D A; 4FW6 A; 5GME A; 5IT9 Q; 3ZZU A; 1KIJ A; 2Q2E B; 4B3T E; 2JEB B; 4MYT A; 4AQY I; 5DRO A; 3KRN A; 3CWV A; 3OTO E; 4JI7 I; 4DR4 E; 4LFC I; 3ZZT A; 2IOQ A; 1ZM4 A; 1ZXM A; 4WUC A; 1J5E E; 4DR6 I; 4LF4 E; 4B3R E; 4P52 A; 3U1Y A; 3JAM Q; 4DV3 E; 4JV5 I; 5DNX A; 4N3O A; 1RRE A; 4J3D A; 4KHP E; 1N32 I; 1KVK A; 1RR9 A; 4FW5 A; 1ZM9 A; 2CZ9 A; 4DUY I; 2C37 A; 4JI5 E; 5DRR A; 1H7S A; 2HFU A; 3V2U C; 3HUL A; 2NN6 F; 1Z0E A; 4I3H A; 1XNR I; 4X65 E; 4MU0 A; 5BR8 I; 1IBM I; 1FI4 A; 4PU9 A; 5C0X C; 4ZVI A; 4EMD A; 5LMN I; 4HYM A; 2GO4 A; 4MYU A; 1XHK A; 4OKG A; 3GME A; 4OZE A; 5DRP A; 1MX0 A; 3M85 G; 4JI0 E; 3PYE A; 4K0K E; 4DV0 E; 2WP8 B; 4GKK E; 2A2C A; 5A2Q Q; 4NXN I; 4NBQ A; 2E5L I; 4DR1 E; 1IBL I; 4IS9 A; 4B3S E; 3M7N G; 3D4J A; 3PS2 A; 3WU6 A; 3GON A; 5L3J A; 4OO1 F; 2VF3 A; 4DPW A; 5IWA I; 2UXB I; 2UUC E; 1N36 I; 5K36 F; 1XNQ E; 1FNM A; 4DR2 I; 1YH8 A; 4YY3 E; 4DV1 I; 4DPT A; 2C38 A; 4LFB I; 5C0X E; 4OX9 I; 2V2Q A; 5K36 C; 1RHY A; 1Z0B A; 1ZM2 A; 1U2R A; 4DR3 E; 5LMU I; 5JEA B; 3H4L A; 4IZJ A; 5C0X A; 2UU9 I; 2PNM A; 2C39 B; 2CG9 A; 2PNL A; 4ED4 A; 4B3M E; 2BM0 A; 1OYP A; 2ZIT A; 3LPS A; 3J81 Q; 1ZXN A; 5JEA D; 4DR7 E; 4IZK B; 3P3C A; 1N34 I; 2UUA E; 2Z5C B; 4XTJ A; 3J80 C; 3M85 D; 2JE6 A; 4U3B A; 3T1H I; 5DNL A; 4LFA E; 1UDO A; 2OI2 A; 1IBK E; 4FW7 A; 3L7Z B; 3M7N D; 4DR5 I; 4LF9 I; 1WUU A; 4LF5 E; 5FWK A; 4DV7 I; 3V5R A; 2O1V A; 3QT8 A; 4DUZ E; 4USM A; 1FJG I; 1XMQ E; 4ISA A; 4OO1 A; 2Z5B A; 4JI1 I; 1XMO I; 5K36 A; 1HR0 E; 2VQF I; 2BR2 A; 4LCF A; 4LF8 I; 4JI3 I; 4JI2 I; 1N33 I; 4PRV A; 4BA1 B; 2HHH I; 4DV2 E; 3PYG A; 4MU1 A; 4DPU A; 5A2Q C; 1ZM3 A; 3LTO A; 3UHM A; 3QT5 A; 3J7A M; 2HK3 A; 3ZKD A; 2JEB A; 3B8H A; 4LF6 E; 4LPF A; 4X66 E; 3GCM A; 3QT6 A; 4JI4 E; 4USK A; 2LJP A; 4DV5 E; 4JI8 E; 4P7A A; 4BA2 A; 1MU5 A; 4LF7 I; 2CVE A; 4UT4 A; 2PO1 B; 4FW3 A; 4JYA I; 5C0X F; 4GKJ E; 4YHH I; 1XXE A; 3F0N A; 4X62 I; 1KTV A; 4JG4 A; 2PO2 B; 2WW4 A; 4JI6 E; 2UXC I; 3Q1Q A; 3J81 C; 4Z7C A; 1I94 E; 4NXM E; 1UDN A; 1UDQ A; 4QNK A; 2F4V E; 1HNW I; 2GO3 A; 4X64 E; 3ZM7 A; 2E1R A; 3PYF A; 2UXD E; 1HNZ E; 4DV4 E; 2ZM6 E; 2J7K A; 2BV3 A; 3H1C A; 5JEA C; 3LNU A; 5EL9 A; 2WNR B; 4DU8 A; 2VQF E; 2VQE I; 2ZBK B; 2UUB I; 1EA6 A; 4IFD B; 1HNX I; 4LF8 E; 2WP8 A; 4AQY E; 3T1Y I; 4IFD E; 1Z0G A; 4JI7 E; 4IFD D; 5GMD A; 4LFC E; 4AID A; 5IT9 C; 1USV A; 4FWH A; 4HAC B; 2O1U A; 4DR6 E; 4B3T I; 1OJ4 A; 2V2V A; 3WU4 A; 3Q6M A; 1K47 A; 1B62 A; 2PO0 A; 1N0V C; 1Z59 A; 4HY1 A; 4DPY A; 1PKP A; 3OTO I; 4JV5 E; 4DR4 I; 1S4E A; 1R6L A; 2PNZ B; 3J7A G; 5JEA E; 1N32 E; #chains in the Genus database with same CATH homology 1Y5Y A; 1Y60 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
