1Y69K

Rrf domain i in complex with the 50s ribosomal subunit from deinococcus radiodurans
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title X-ray crystallography on ribosome recycling: mechanism of binding and action of RRF on the 50S ribosomal subunit
pubmed doi rcsb
source organism Escherichia coli
total genus 8
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2004-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1y69K01
1Q82J 3G71H 3J7ZM 3CMAH 1K9MJ 1N8RJ 4WF9J 3CF5J 4WFAJ 5GAEN 2ZJQJ 3I55H 5H1SO 1VQNH 3CCMH 3CCJH 3CC4H 5GAHN 5GADN 1YJWH 3CCQH 1KC8J 3CCSH 3CC7H 5DM7J 1NJIJ 3CCUH 3DLLJ 3CCRH 4WFNJ 3CCVH 3CCEH 5HL7J 3CMEH 3CC2H 1WKIA 1VQ9H 2PA2A 1VQ4H 1VQ8H 3CXCH 5GAGN 2QEXH 1K8AJ 1YITH 1VQLH 1YJNH 1S72H 3I56H 3PIPJ 3PIOJ 1VQ5H 4UY8M 1QVFH 2OTJH 4IOCJ 4IOAJ 1YJ9H 2ZJRJ 4U67J 3OW2H 1VQMH 3CPWH 1KD1J 1VQPH 5JVGJ 3CCLH 4WCEJ 1VQOH 1YIJH 1M90J 4WFBJ 1Y69K 1YHQH 1Q86J 4IO9J 1QVGH 1VQ6H 3CD6H 5AN9F 1JJ2H 5JVHJ 3G4SH 1Q7YJ 1KQSH 2OTLH 1W2BH 1M1KJ 5MLCO 2QA4H 1YI2H 2ZJPJ 1Q81J 1VQ7H 1VQKH 3G6EH 1K73J 5DM6J
chains in the Genus database with same CATH superfamily
4US9A 3G71H 1Q82J 3WO0A 3J7ZM 3CMAH 1K9MJ 1N8RJ 4XR5A 4WF9J 3CF5J 1JROB 5GAEN 2J0FA 4AP8A 1OTPA 4WFAJ 4YEKA 2ZJQJ 3C2FA 5AYZA 3I55H 3ETRC 2E3TA 5H1SO 1VQNH 3CCMH 3CCJH 3CC4H 5GAHN 5GADN 1YJWH 3CCQH 3PAJA 1YTKA 1KC8J 3CCSH 1QAPA 3CC7H 5DM7J 2WK6A 4KWWA 1NVIE 4EAFA 1QPRA 1NJIJ 5HUPA 4ZOHA 3CCUH 2WK5A 4X46A 3DLLJ 1X1OA 3WO1A 5AYYA 3B9JC 3CCRH 4WFNJ 4GA5A 3CCVH 4GA4A 2B7PA 5HL7J 3CCEH 3C2EA 1ZXIB 3CMEH 1N63B 1VLBA 4US8A 3CC2H 1VDVA 1JRPB 1WKIA 3NVVC 1FO4A 1N62B 1VQ9H 3NS1C 2PA2A 1VQ4H 2W3SB 5AYXA 3NVWC 5HUOA 3AMZA 3CXCH 1VQ8H 5GAGN 1N60B 1DGJA 2QEXH 1K8AJ 5MPOC 1YITH 3L0GA 1VQLH 1YJNH 3C2OA 3BIIE 3I56H 1S72H 4C80A 3PIPJ 2B7QA 4YYYA 4C7YA 4USAA 3PIOJ 2WP4A 2Q5WE 3FC4A 1FMAE 3NRZC 3L4PA 1VQ5H 4UY8M 4C7ZA 1N5WB 5EP8A 1QVFH 2OTJH 1FFUB 4IOCJ 4IOAJ 1QPQA 3H5QA 3AN1A 1YJ9H 3TQVA 2W3RB 2ZJRJ 1FM0E 1YTEA 4U67J 1FIQC 3AM9A 3OW2H 1VQMH 3CPWH 1KD1J 1VQPH 3RPFA 2I1OA 1RM6A 5JVGJ 2B7NA 3VMMA 2TPTA 5EY3A 3CCLH 3WNZA 4KWVA 1V97A 4LHMA 1N5XA 4WCEJ 1VQOH 1YIJH 1M90J 3FAHA 3C2RA 4GA6A 3SR6C 4WFBJ 1Y69K 1YHQH 2DSJA 1Q86J 1UOUA 2OMDA 4IO9J 1QVGH 1VQ6H 3CD6H 5AN9F 1FFVB 1JJ2H 5JVHJ 1BRWA 2I14A 3EUB4 3NVZC 3G4SH 1Q7YJ 1YTDA 2W54B 1QPOA 3NVYC 1N61B 1KQSH 1SIJA 1O4UA 2OTLH 1SB3A 1QPNA 3GNNA 2W55B 5HULA 2JBMA 1AZYA 2QIEA 4I9AA 1W2BH 3C2VA 1M1KJ 1NVJA 5MLCO 2QA4H 1YI2H 4EADA 2ZJPJ 1Q81J 1VQ7H 1VQKH 1WYGA 3G6EH 1K73J 5DM6J
chains in the Genus database with same CATH topology
1Q82J 3G71H 3J7ZM 3CMAH 1K9MJ 1N8RJ 4WF9J 3CF5J 4WFAJ 5GAEN 2ZJQJ 3I55H 5H1SO 1VQNH 3CCMH 3CCJH 3CC4H 5GAHN 5GADN 1YJWH 3CCQH 1KC8J 3CCSH 3CC7H 5DM7J 1NJIJ 3CCUH 3DLLJ 3CCRH 4WFNJ 3CCVH 3CCEH 5HL7J 3CMEH 3CC2H 1WKIA 1VQ9H 2PA2A 1VQ4H 1VQ8H 3CXCH 5GAGN 2QEXH 1K8AJ 1YITH 1VQLH 1YJNH 1S72H 3I56H 3PIPJ 3PIOJ 1VQ5H 4UY8M 1QVFH 2OTJH 4IOCJ 4IOAJ 1YJ9H 2ZJRJ 4U67J 3OW2H 1VQMH 3CPWH 1KD1J 1VQPH 5JVGJ 3CCLH 4WCEJ 1VQOH 1YIJH 1M90J 4WFBJ 1Y69K 1YHQH 1Q86J 4IO9J 1QVGH 1VQ6H 3CD6H 5AN9F 1JJ2H 5JVHJ 3G4SH 1Q7YJ 1KQSH 2OTLH 1W2BH 1M1KJ 5MLCO 2QA4H 1YI2H 2ZJPJ 1Q81J 1VQ7H 1VQKH 3G6EH 1K73J 5DM6J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q82 J;  3G71 H;  3J7Z M;  3CMA H;  1K9M J;  1N8R J;  4WF9 J;  3CF5 J;  4WFA J;  5GAE N;  2ZJQ J;  3I55 H;  5H1S O;  1VQN H;  3CCM H;  3CCJ H;  3CC4 H;  5GAH N;  5GAD N;  1YJW H;  3CCQ H;  1KC8 J;  3CCS H;  3CC7 H;  5DM7 J;  1NJI J;  3CCU H;  3DLL J;  3CCR H;  4WFN J;  3CCV H;  3CCE H;  5HL7 J;  3CME H;  3CC2 H;  1WKI A;  1VQ9 H;  2PA2 A;  1VQ4 H;  1VQ8 H;  3CXC H;  5GAG N;  2QEX H;  1K8A J;  1YIT H;  1VQL H;  1YJN H;  1S72 H;  3I56 H;  3PIP J;  3PIO J;  1VQ5 H;  4UY8 M;  1QVF H;  2OTJ H;  4IOC J;  4IOA J;  1YJ9 H;  2ZJR J;  4U67 J;  3OW2 H;  1VQM H;  3CPW H;  1KD1 J;  1VQP H;  5JVG J;  3CCL H;  4WCE J;  1VQO H;  1YIJ H;  1M90 J;  4WFB J;  1Y69 K;  1YHQ H;  1Q86 J;  4IO9 J;  1QVG H;  1VQ6 H;  3CD6 H;  5AN9 F;  1JJ2 H;  5JVH J;  3G4S H;  1Q7Y J;  1KQS H;  2OTL H;  1W2B H;  1M1K J;  5MLC O;  2QA4 H;  1YI2 H;  2ZJP J;  1Q81 J;  1VQ7 H;  1VQK H;  3G6E H;  1K73 J;  5DM6 J; 
#chains in the Genus database with same CATH topology
 4US9 A;  3G71 H;  1Q82 J;  3WO0 A;  3J7Z M;  3CMA H;  1K9M J;  1N8R J;  4XR5 A;  4WF9 J;  3CF5 J;  1JRO B;  5GAE N;  2J0F A;  4AP8 A;  1OTP A;  4WFA J;  4YEK A;  2ZJQ J;  3C2F A;  5AYZ A;  3I55 H;  3ETR C;  2E3T A;  5H1S O;  1VQN H;  3CCM H;  3CCJ H;  3CC4 H;  5GAH N;  5GAD N;  1YJW H;  3CCQ H;  3PAJ A;  1YTK A;  1KC8 J;  3CCS H;  1QAP A;  3CC7 H;  5DM7 J;  2WK6 A;  4KWW A;  1NVI E;  4EAF A;  1QPR A;  1NJI J;  5HUP A;  4ZOH A;  3CCU H;  2WK5 A;  4X46 A;  3DLL J;  1X1O A;  3WO1 A;  5AYY A;  3B9J C;  3CCR H;  4WFN J;  4GA5 A;  3CCV H;  4GA4 A;  2B7P A;  5HL7 J;  3CCE H;  3C2E A;  1ZXI B;  3CME H;  1N63 B;  1VLB A;  4US8 A;  3CC2 H;  1VDV A;  1JRP B;  1WKI A;  3NVV C;  1FO4 A;  1N62 B;  1VQ9 H;  3NS1 C;  2PA2 A;  1VQ4 H;  2W3S B;  5AYX A;  3NVW C;  5HUO A;  3AMZ A;  3CXC H;  1VQ8 H;  5GAG N;  1N60 B;  1DGJ A;  2QEX H;  1K8A J;  5MPO C;  1YIT H;  3L0G A;  1VQL H;  1YJN H;  3C2O A;  3BII E;  3I56 H;  1S72 H;  4C80 A;  3PIP J;  2B7Q A;  4YYY A;  4C7Y A;  4USA A;  3PIO J;  2WP4 A;  2Q5W E;  3FC4 A;  1FMA E;  3NRZ C;  3L4P A;  1VQ5 H;  4UY8 M;  4C7Z A;  1N5W B;  5EP8 A;  1QVF H;  2OTJ H;  1FFU B;  4IOC J;  4IOA J;  1QPQ A;  3H5Q A;  3AN1 A;  1YJ9 H;  3TQV A;  2W3R B;  2ZJR J;  1FM0 E;  1YTE A;  4U67 J;  1FIQ C;  3AM9 A;  3OW2 H;  1VQM H;  3CPW H;  1KD1 J;  1VQP H;  3RPF A;  2I1O A;  1RM6 A;  5JVG J;  2B7N A;  3VMM A;  2TPT A;  5EY3 A;  3CCL H;  3WNZ A;  4KWV A;  1V97 A;  4LHM A;  1N5X A;  4WCE J;  1VQO H;  1YIJ H;  1M90 J;  3FAH A;  3C2R A;  4GA6 A;  3SR6 C;  4WFB J;  1Y69 K;  1YHQ H;  2DSJ A;  1Q86 J;  1UOU A;  2OMD A;  4IO9 J;  1QVG H;  1VQ6 H;  3CD6 H;  5AN9 F;  1FFV B;  1JJ2 H;  5JVH J;  1BRW A;  2I14 A;  3EUB 4;  3NVZ C;  3G4S H;  1Q7Y J;  1YTD A;  2W54 B;  1QPO A;  3NVY C;  1N61 B;  1KQS H;  1SIJ A;  1O4U A;  2OTL H;  1SB3 A;  1QPN A;  3GNN A;  2W55 B;  5HUL A;  2JBM A;  1AZY A;  2QIE A;  4I9A A;  1W2B H;  3C2V A;  1M1K J;  1NVJ A;  5MLC O;  2QA4 H;  1YI2 H;  4EAD A;  2ZJP J;  1Q81 J;  1VQ7 H;  1VQK H;  1WYG A;  3G6E H;  1K73 J;  5DM6 J; 
#chains in the Genus database with same CATH homology
 1Q82 J;  3G71 H;  3J7Z M;  3CMA H;  1K9M J;  1N8R J;  4WF9 J;  3CF5 J;  4WFA J;  5GAE N;  2ZJQ J;  3I55 H;  5H1S O;  1VQN H;  3CCM H;  3CCJ H;  3CC4 H;  5GAH N;  5GAD N;  1YJW H;  3CCQ H;  1KC8 J;  3CCS H;  3CC7 H;  5DM7 J;  1NJI J;  3CCU H;  3DLL J;  3CCR H;  4WFN J;  3CCV H;  3CCE H;  5HL7 J;  3CME H;  3CC2 H;  1WKI A;  1VQ9 H;  2PA2 A;  1VQ4 H;  1VQ8 H;  3CXC H;  5GAG N;  2QEX H;  1K8A J;  1YIT H;  1VQL H;  1YJN H;  1S72 H;  3I56 H;  3PIP J;  3PIO J;  1VQ5 H;  4UY8 M;  1QVF H;  2OTJ H;  4IOC J;  4IOA J;  1YJ9 H;  2ZJR J;  4U67 J;  3OW2 H;  1VQM H;  3CPW H;  1KD1 J;  1VQP H;  5JVG J;  3CCL H;  4WCE J;  1VQO H;  1YIJ H;  1M90 J;  4WFB J;  1Y69 K;  1YHQ H;  1Q86 J;  4IO9 J;  1QVG H;  1VQ6 H;  3CD6 H;  5AN9 F;  1JJ2 H;  5JVH J;  3G4S H;  1Q7Y J;  1KQS H;  2OTL H;  1W2B H;  1M1K J;  5MLC O;  2QA4 H;  1YI2 H;  2ZJP J;  1Q81 J;  1VQ7 H;  1VQK H;  3G6E H;  1K73 J;  5DM6 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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