1Y69K

Rrf domain i in complex with the 50s ribosomal subunit from deinococcus radiodurans
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title X-ray crystallography on ribosome recycling: mechanism of binding and action of RRF on the 50S ribosomal subunit
pubmed doi rcsb
source organism Escherichia coli
total genus 8
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2004-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1y69K01
4WCEJ 3CXCH 1YJNH 5GAGN 5H1SO 1Q82J 1K8AJ 1YHQH 5MLCO 2QEXH 1S72H 1Q86J 2ZJPJ 4WFNJ 2OTLH 3PIPJ 3CPWH 1NJIJ 1N8RJ 1W2BH 3CCEH 1VQ7H 3CF5J 3CCRH 1VQLH 3CCUH 3CCVH 3I55H 4IO9J 4UY8M 1YJWH 3CCQH 1VQ8H 1VQPH 1M1KJ 1YIJH 1Q7YJ 1QVFH 1Y69K 3CC2H 3G71H 5HL7J 5AN9F 3CC4H 1VQ9H 3PIOJ 3CMEH 1M90J 3CD6H 1VQOH 1KD1J 1Q81J 3CCSH 2ZJQJ 1WKIA 5GAEN 3G4SH 3OW2H 3G6EH 3I56H 1K9MJ 5GAHN 1VQ6H 1QVGH 1K73J 1JJ2H 1VQNH 1YITH 3CMAH 5DM7J 4IOAJ 5JVGJ 1VQ4H 2PA2A 3CCMH 1KC8J 2OTJH 1VQ5H 5DM6J 3CCJH 1YI2H 2QA4H 3CC7H 4WF9J 1VQKH 1VQMH 1KQSH 4U67J 5GADN 3J7ZM 3DLLJ 4WFAJ 2ZJRJ 4WFBJ 5JVHJ 3CCLH 4IOCJ 1YJ9H
chains in the Genus database with same CATH superfamily
3BIIE 2E3TA 2WK5A 4WCEJ 4X46A 3CXCH 1YJNH 5GAGN 3C2EA 2OMDA 5H1SO 1Q82J 1QPOA 1OTPA 1K8AJ 1JROB 1YHQH 5MLCO 1FM0E 2QEXH 1N5WB 2JBMA 1S72H 3NRZC 2ZJPJ 1Q86J 4WFNJ 2OTLH 4LHMA 3C2RA 1YTKA 3GNNA 2B7PA 3PIPJ 4USAA 1N61B 3CPWH 1NJIJ 3SR6C 5EP8A 2DSJA 2W3RB 3AM9A 2B7NA 3L4PA 4YEKA 1N8RJ 1FIQC 1W2BH 3CCEH 1VQ7H 1SIJA 1WYGA 3CCRH 3CF5J 1UOUA 1VQLH 4US9A 2I1OA 5HULA 3CCUH 3CCVH 3I55H 1DGJA 2Q5WE 4ZOHA 4IO9J 5HUPA 4UY8M 1YTEA 1YJWH 3CCQH 4KWVA 1VQ8H 2W54B 1VQPH 4GA6A 1M1KJ 1SB3A 1YIJH 1Q7YJ 5EY3A 3L0GA 3WO0A 1QVFH 1Y69K 4US8A 3C2FA 1ZXIB 1NVJA 2TPTA 3CC2H 3G71H 1FMAE 5HL7J 5AN9F 1QPQA 5AYZA 3CC4H 1VQ9H 3H5QA 1BRWA 3PIOJ 3CMEH 1N62B 5AYYA 1QPRA 1M90J 3CD6H 2W55B 1JRPB 1VQOH 1KD1J 1Q81J 4YYYA 3CCSH 3WNZA 1V97A 1FO4A 2ZJQJ 1WKIA 5GAEN 4C7ZA 3G4SH 2WP4A 3OW2H 4C7YA 2J0FA 3G6EH 1YTDA 3C2OA 3NVVC 5AYXA 3I56H 3ETRC 1K9MJ 1NVIE 3NVWC 1N63B 4XR5A 5GAHN 3B9JC 1VQ6H 2B7QA 1VDVA 3WO1A 1FFVB 1QVGH 3FAHA 3NVZC 1K73J 1JJ2H 4GA5A 1VQNH 1N60B 1YITH 3CMAH 4AP8A 5DM7J 4IOAJ 5JVGJ 3RPFA 1O4UA 2PA2A 3CCMH 1VQ4H 1QPNA 1KC8J 2OTJH 1VQ5H 1AZYA 2WK6A 2QIEA 3TQVA 4EADA 5DM6J 3PAJA 3CCJH 2I14A 4C80A 1QAPA 2QA4H 1YI2H 3CC7H 3FC4A 4WF9J 1VQKH 4EAFA 1RM6A 1VQMH 1KQSH 3C2VA 3NVYC 5GADN 4U67J 3AMZA 1N5XA 3VMMA 3J7ZM 3DLLJ 4GA4A 5HUOA 4WFAJ 2ZJRJ 1X1OA 5MPOC 4WFBJ 3EUB4 1VLBA 4KWWA 5JVHJ 3AN1A 3CCLH 4I9AA 4IOCJ 1FFUB 3NS1C 1YJ9H 2W3SB
chains in the Genus database with same CATH topology
4WCEJ 3CXCH 1YJNH 5GAGN 5H1SO 1Q82J 1K8AJ 1YHQH 5MLCO 2QEXH 1S72H 1Q86J 2ZJPJ 4WFNJ 2OTLH 3PIPJ 3CPWH 1NJIJ 1N8RJ 1W2BH 3CCEH 1VQ7H 3CF5J 3CCRH 1VQLH 3CCUH 3CCVH 3I55H 4IO9J 4UY8M 1YJWH 3CCQH 1VQ8H 1VQPH 1M1KJ 1YIJH 1Q7YJ 1QVFH 1Y69K 3CC2H 3G71H 5HL7J 5AN9F 3CC4H 1VQ9H 3PIOJ 3CMEH 1M90J 3CD6H 1VQOH 1KD1J 1Q81J 3CCSH 2ZJQJ 1WKIA 5GAEN 3G4SH 3OW2H 3G6EH 3I56H 1K9MJ 5GAHN 1VQ6H 1QVGH 1K73J 1JJ2H 1VQNH 1YITH 3CMAH 5DM7J 4IOAJ 5JVGJ 1VQ4H 2PA2A 3CCMH 1KC8J 2OTJH 1VQ5H 5DM6J 3CCJH 1YI2H 2QA4H 3CC7H 4WF9J 1VQKH 1VQMH 1KQSH 4U67J 5GADN 3J7ZM 3DLLJ 4WFAJ 2ZJRJ 4WFBJ 5JVHJ 3CCLH 4IOCJ 1YJ9H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WCE J;  3CXC H;  1YJN H;  5GAG N;  5H1S O;  1Q82 J;  1K8A J;  1YHQ H;  5MLC O;  2QEX H;  1S72 H;  1Q86 J;  2ZJP J;  4WFN J;  2OTL H;  3PIP J;  3CPW H;  1NJI J;  1N8R J;  1W2B H;  3CCE H;  1VQ7 H;  3CF5 J;  3CCR H;  1VQL H;  3CCU H;  3CCV H;  3I55 H;  4IO9 J;  4UY8 M;  1YJW H;  3CCQ H;  1VQ8 H;  1VQP H;  1M1K J;  1YIJ H;  1Q7Y J;  1QVF H;  1Y69 K;  3CC2 H;  3G71 H;  5HL7 J;  5AN9 F;  3CC4 H;  1VQ9 H;  3PIO J;  3CME H;  1M90 J;  3CD6 H;  1VQO H;  1KD1 J;  1Q81 J;  3CCS H;  2ZJQ J;  1WKI A;  5GAE N;  3G4S H;  3OW2 H;  3G6E H;  3I56 H;  1K9M J;  5GAH N;  1VQ6 H;  1QVG H;  1K73 J;  1JJ2 H;  1VQN H;  1YIT H;  3CMA H;  5DM7 J;  4IOA J;  5JVG J;  1VQ4 H;  2PA2 A;  3CCM H;  1KC8 J;  2OTJ H;  1VQ5 H;  5DM6 J;  3CCJ H;  1YI2 H;  2QA4 H;  3CC7 H;  4WF9 J;  1VQK H;  1VQM H;  1KQS H;  4U67 J;  5GAD N;  3J7Z M;  3DLL J;  4WFA J;  2ZJR J;  4WFB J;  5JVH J;  3CCL H;  4IOC J;  1YJ9 H; 
#chains in the Genus database with same CATH topology
 3BII E;  2E3T A;  2WK5 A;  4WCE J;  4X46 A;  3CXC H;  1YJN H;  5GAG N;  3C2E A;  2OMD A;  5H1S O;  1Q82 J;  1QPO A;  1OTP A;  1K8A J;  1JRO B;  1YHQ H;  5MLC O;  1FM0 E;  2QEX H;  1N5W B;  2JBM A;  1S72 H;  3NRZ C;  2ZJP J;  1Q86 J;  4WFN J;  2OTL H;  4LHM A;  3C2R A;  1YTK A;  3GNN A;  2B7P A;  3PIP J;  4USA A;  1N61 B;  3CPW H;  1NJI J;  3SR6 C;  5EP8 A;  2DSJ A;  2W3R B;  3AM9 A;  2B7N A;  3L4P A;  4YEK A;  1N8R J;  1FIQ C;  1W2B H;  3CCE H;  1VQ7 H;  1SIJ A;  1WYG A;  3CCR H;  3CF5 J;  1UOU A;  1VQL H;  4US9 A;  2I1O A;  5HUL A;  3CCU H;  3CCV H;  3I55 H;  1DGJ A;  2Q5W E;  4ZOH A;  4IO9 J;  5HUP A;  4UY8 M;  1YTE A;  1YJW H;  3CCQ H;  4KWV A;  1VQ8 H;  2W54 B;  1VQP H;  4GA6 A;  1M1K J;  1SB3 A;  1YIJ H;  1Q7Y J;  5EY3 A;  3L0G A;  3WO0 A;  1QVF H;  1Y69 K;  4US8 A;  3C2F A;  1ZXI B;  1NVJ A;  2TPT A;  3CC2 H;  3G71 H;  1FMA E;  5HL7 J;  5AN9 F;  1QPQ A;  5AYZ A;  3CC4 H;  1VQ9 H;  3H5Q A;  1BRW A;  3PIO J;  3CME H;  1N62 B;  5AYY A;  1QPR A;  1M90 J;  3CD6 H;  2W55 B;  1JRP B;  1VQO H;  1KD1 J;  1Q81 J;  4YYY A;  3CCS H;  3WNZ A;  1V97 A;  1FO4 A;  2ZJQ J;  1WKI A;  5GAE N;  4C7Z A;  3G4S H;  2WP4 A;  3OW2 H;  4C7Y A;  2J0F A;  3G6E H;  1YTD A;  3C2O A;  3NVV C;  5AYX A;  3I56 H;  3ETR C;  1K9M J;  1NVI E;  3NVW C;  1N63 B;  4XR5 A;  5GAH N;  3B9J C;  1VQ6 H;  2B7Q A;  1VDV A;  3WO1 A;  1FFV B;  1QVG H;  3FAH A;  3NVZ C;  1K73 J;  1JJ2 H;  4GA5 A;  1VQN H;  1N60 B;  1YIT H;  3CMA H;  4AP8 A;  5DM7 J;  4IOA J;  5JVG J;  3RPF A;  1O4U A;  2PA2 A;  3CCM H;  1VQ4 H;  1QPN A;  1KC8 J;  2OTJ H;  1VQ5 H;  1AZY A;  2WK6 A;  2QIE A;  3TQV A;  4EAD A;  5DM6 J;  3PAJ A;  3CCJ H;  2I14 A;  4C80 A;  1QAP A;  2QA4 H;  1YI2 H;  3CC7 H;  3FC4 A;  4WF9 J;  1VQK H;  4EAF A;  1RM6 A;  1VQM H;  1KQS H;  3C2V A;  3NVY C;  5GAD N;  4U67 J;  3AMZ A;  1N5X A;  3VMM A;  3J7Z M;  3DLL J;  4GA4 A;  5HUO A;  4WFA J;  2ZJR J;  1X1O A;  5MPO C;  4WFB J;  3EUB 4;  1VLB A;  4KWW A;  5JVH J;  3AN1 A;  3CCL H;  4I9A A;  4IOC J;  1FFU B;  3NS1 C;  1YJ9 H;  2W3S B; 
#chains in the Genus database with same CATH homology
 4WCE J;  3CXC H;  1YJN H;  5GAG N;  5H1S O;  1Q82 J;  1K8A J;  1YHQ H;  5MLC O;  2QEX H;  1S72 H;  1Q86 J;  2ZJP J;  4WFN J;  2OTL H;  3PIP J;  3CPW H;  1NJI J;  1N8R J;  1W2B H;  3CCE H;  1VQ7 H;  3CF5 J;  3CCR H;  1VQL H;  3CCU H;  3CCV H;  3I55 H;  4IO9 J;  4UY8 M;  1YJW H;  3CCQ H;  1VQ8 H;  1VQP H;  1M1K J;  1YIJ H;  1Q7Y J;  1QVF H;  1Y69 K;  3CC2 H;  3G71 H;  5HL7 J;  5AN9 F;  3CC4 H;  1VQ9 H;  3PIO J;  3CME H;  1M90 J;  3CD6 H;  1VQO H;  1KD1 J;  1Q81 J;  3CCS H;  2ZJQ J;  1WKI A;  5GAE N;  3G4S H;  3OW2 H;  3G6E H;  3I56 H;  1K9M J;  5GAH N;  1VQ6 H;  1QVG H;  1K73 J;  1JJ2 H;  1VQN H;  1YIT H;  3CMA H;  5DM7 J;  4IOA J;  5JVG J;  1VQ4 H;  2PA2 A;  3CCM H;  1KC8 J;  2OTJ H;  1VQ5 H;  5DM6 J;  3CCJ H;  1YI2 H;  2QA4 H;  3CC7 H;  4WF9 J;  1VQK H;  1VQM H;  1KQS H;  4U67 J;  5GAD N;  3J7Z M;  3DLL J;  4WFA J;  2ZJR J;  4WFB J;  5JVH J;  3CCL H;  4IOC J;  1YJ9 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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