1Y9XA

Solution structure of archaeon dna-binding protein ssh10b
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
97
structure length
97
Chain Sequence
MSSGTPTPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLADKIEIKEIRVGSQVVTSQDGRQSRVSTIEIAIRKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA/RNA-binding protein Alba 1
publication title A stabilizing alpha/beta-hydrophobic core greatly contributes to hyperthermostability of archaeal [P62A]Ssh10b.
pubmed doi rcsb
source organism Sulfolobus shibatae
total genus 21
structure length 97
sequence length 97
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01918 Alba Alba
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.20 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Alba-like domain 1y9xA01
2A2YA 3U6YA 1VM0A 1NFHA 1H0YA 3TOEA 1NH9A 3WBMA 1UDVA 2Q3VA 3IABA 1H0XA 1NFJA 2EH1A 4Z9EA 1Y9XA 2H9UA 2Z7CA 3IABB 2BKYX 2EK0A
chains in the Genus database with same CATH superfamily
1H0YA 1XEZA 3WBMA 1H4QA 1UDVA 3TTCA 3IALA 4FBQA 3LVJC 4K88A 1NJ2A 1H0XA 4NZRM 3P04A 3TSPA 1TIGA 2EH1A 4Z9EA 4HVZA 3DSDA 2GTCA 1PAVA 2Z7CA 1Y2IA 2EK0A 3VTHA 3TOEA 3TTDA 3VTIA 1II7A 3ZIIA 3IABA 1JE3A 4YKEA 2M71A 2IFEA 1H4SA 1LN4A 1NJ8A 1H4TA 4FBWA 3TSUA 2BKYX 4FCXA 3U6YA 1VM0A 4K86A 4HVCA 1DCJA 3TSQA 2CRQA 1VR4A 4NZTM 4K87A 4FBKA 1NJ1A 3DSCA 1S8EA 1RQ8A 1Y9XA 4WI1A 3T1IA 3TTFA 2L8YA 2H9UA 3IABB 4HD0A 4OLFA 2A2YA 4NCXA 3QKBA 1NFHA 3ZIEA 1NH9A 1NJ5A 2LN3A 2P9BA 2Q3VA 1JO0A 2LXRA 3LVKB 3HZ7A 4Q15A 4EO0A 4TWAA 4YDQA 2Y1BA 1NFJA 3ZIGA 1NJ6A 3ZIHA 1JDQA 1HC7A
chains in the Genus database with same CATH topology
2A2YA 3U6YA 1VM0A 1NFHA 1H0YA 3TOEA 1NH9A 3WBMA 1UDVA 2Q3VA 3IABA 1H0XA 1NFJA 2EH1A 4Z9EA 1Y9XA 2H9UA 2Z7CA 3IABB 2BKYX 2EK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A2Y A;  3U6Y A;  1VM0 A;  1NFH A;  1H0Y A;  3TOE A;  1NH9 A;  3WBM A;  1UDV A;  2Q3V A;  3IAB A;  1H0X A;  1NFJ A;  2EH1 A;  4Z9E A;  1Y9X A;  2H9U A;  2Z7C A;  3IAB B;  2BKY X;  2EK0 A; 
#chains in the Genus database with same CATH topology
 1H0Y A;  1XEZ A;  3WBM A;  1H4Q A;  1UDV A;  3TTC A;  3IAL A;  4FBQ A;  3LVJ C;  4K88 A;  1NJ2 A;  1H0X A;  4NZR M;  3P04 A;  3TSP A;  1TIG A;  2EH1 A;  4Z9E A;  4HVZ A;  3DSD A;  2GTC A;  1PAV A;  2Z7C A;  1Y2I A;  2EK0 A;  3VTH A;  3TOE A;  3TTD A;  3VTI A;  1II7 A;  3ZII A;  3IAB A;  1JE3 A;  4YKE A;  2M71 A;  2IFE A;  1H4S A;  1LN4 A;  1NJ8 A;  1H4T A;  4FBW A;  3TSU A;  2BKY X;  4FCX A;  3U6Y A;  1VM0 A;  4K86 A;  4HVC A;  1DCJ A;  3TSQ A;  2CRQ A;  1VR4 A;  4NZT M;  4K87 A;  4FBK A;  1NJ1 A;  3DSC A;  1S8E A;  1RQ8 A;  1Y9X A;  4WI1 A;  3T1I A;  3TTF A;  2L8Y A;  2H9U A;  3IAB B;  4HD0 A;  4OLF A;  2A2Y A;  4NCX A;  3QKB A;  1NFH A;  3ZIE A;  1NH9 A;  1NJ5 A;  2LN3 A;  2P9B A;  2Q3V A;  1JO0 A;  2LXR A;  3LVK B;  3HZ7 A;  4Q15 A;  4EO0 A;  4TWA A;  4YDQ A;  2Y1B A;  1NFJ A;  3ZIG A;  1NJ6 A;  3ZIH A;  1JDQ A;  1HC7 A; 
#chains in the Genus database with same CATH homology
 2A2Y A;  3U6Y A;  1VM0 A;  1NFH A;  1H0Y A;  3TOE A;  1NH9 A;  3WBM A;  1UDV A;  2Q3V A;  3IAB A;  1H0X A;  1NFJ A;  2EH1 A;  4Z9E A;  1Y9X A;  2H9U A;  2Z7C A;  3IAB B;  2BKY X;  2EK0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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