1YAFA

Structure of tena from bacillus subtilis
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
219
structure length
219
Chain Sequence
KFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Transcriptional activator tenA
publication title Structural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 94
structure length 219
sequence length 219
chains with identical sequence B, C, D
ec nomenclature ec 3.5.99.2: Aminopyrimidine aminohydrolase.
pdb deposition date 2004-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1yafA00
1WWMA 4RAJA 1OTWA 1WOVA 3I8RA 1WE1A 3I9UA 4GPCA 3HNHA 3BJDA 1WZFA 4G7LA 1WZDA 2A2MA 1WNXA 1OYLA 1P3UA 2Z68A 1J77A 4MECA 4WMHA 1OTVA 1OZLA 2E7EA 3MOOA 4GOHA 1VGIA 4G7TA 3IBXA 2A6BA 1S8CA 2RGZA 4G8PA 1P3VA 4WWZA 2F2GA 3B5PA 2QZCA 1TYHA 4G99A 1NI6A 1S13A 4WX0A 4GPFA 1J02A 1WOWA 1IRMA 1OYKA 1IW0A 5BTQA 1ULXA 2QPPA 3OQLA 1OZRA 1OZEA 2RD3A 4G7UA 3NO6A 4FN6A 3CZYA 1IX4A 1TO9A 1XK2A 4WD4A 1OZWA 3B5OA 2A2OA 1SK7A 2Q4XA 2GM8A 3MVUA 1N45A 1RCWA 4GPHA 3DDEA 1DVEA 1P3TA 1UBBA 1IX3A 1Z72A 1J2CA 1YAKA 1RTWA 1TWNA 1XK1A 4G7PA 1IW1A 1WZGA 4G98A 1IVJA 1TWRA 3K4FA 1V8XA 1WOXA 1T5PA 3HOKA 1DVGA 1N3UA 3I9TA 2Q32A 2QCXA 3HLXA 4NY7A 1XK0A 1XK3A 1WNVA 4G8UA 3RM5A 2DY5A 4G8WA 2ZVUA 3HMLA 2GM7A 1TO9B 1UDDA 1XJZA 4LQXA 1WNWA 4WWJA 1YAFA 3TGMA
chains in the Genus database with same CATH superfamily
1WWMA 4RAJA 1OTWA 1WOVA 3I8RA 1WE1A 3I9UA 4GPCA 3HNHA 3BJDA 1WZFA 4G7LA 1WZDA 2A2MA 1WNXA 1OYLA 1P3UA 2Z68A 1J77A 4MECA 4WMHA 1OTVA 1OZLA 2E7EA 3MOOA 4GOHA 1VGIA 4G7TA 3IBXA 2A6BA 1S8CA 2RGZA 4G8PA 1P3VA 4WWZA 2F2GA 3B5PA 2QZCA 1TYHA 4G99A 1NI6A 1S13A 4WX0A 4GPFA 1J02A 1WOWA 1IRMA 1OYKA 1IW0A 5BTQA 1ULXA 2QPPA 3OQLA 1OZRA 1OZEA 2RD3A 4G7UA 3NO6A 4FN6A 3CZYA 1IX4A 1TO9A 1XK2A 4WD4A 1OZWA 3B5OA 2A2OA 1SK7A 2Q4XA 2GM8A 3MVUA 2LCUA 1N45A 1RCWA 4GPHA 3DDEA 1DVEA 1P3TA 1UBBA 1IX3A 1Z72A 1J2CA 1YAKA 1RTWA 1TWNA 1XK1A 4G7PA 1IW1A 1WZGA 4G98A 1IVJA 1TWRA 3K4FA 1V8XA 1WOXA 1T5PA 3HOKA 1DVGA 1N3UA 3I9TA 2Q32A 2QCXA 3HLXA 4NY7A 1XK0A 1XK3A 1WNVA 4G8UA 3RM5A 2DY5A 4G8WA 2ZVUA 3HMLA 2GM7A 1TO9B 1UDDA 1XJZA 4LQXA 1WNWA 4WWJA 1YAFA 3TGMA
chains in the Genus database with same CATH topology
1WWMA 4RAJA 1OTWA 1WOVA 3I8RA 1WE1A 3I9UA 4GPCA 3HNHA 3BJDA 1WZFA 4G7LA 1WZDA 2A2MA 1WNXA 1OYLA 1P3UA 2Z68A 1J77A 4MECA 4WMHA 1OTVA 1OZLA 2E7EA 3MOOA 4GOHA 1VGIA 4G7TA 3IBXA 2A6BA 1S8CA 2RGZA 4G8PA 1P3VA 4WWZA 2F2GA 3B5PA 2QZCA 1TYHA 4G99A 1NI6A 1S13A 4WX0A 4GPFA 1J02A 1WOWA 1IRMA 1OYKA 1IW0A 5BTQA 1ULXA 2QPPA 3OQLA 1OZRA 1OZEA 2RD3A 4G7UA 3NO6A 4FN6A 3CZYA 1IX4A 1TO9A 1XK2A 4WD4A 1OZWA 3B5OA 2A2OA 1SK7A 2Q4XA 2GM8A 3MVUA 1N45A 1RCWA 4GPHA 3DDEA 1DVEA 1P3TA 1UBBA 1IX3A 1Z72A 1J2CA 1YAKA 1RTWA 1TWNA 1XK1A 4G7PA 1IW1A 1WZGA 4G98A 1IVJA 1TWRA 3K4FA 1V8XA 1WOXA 1T5PA 3HOKA 1DVGA 1N3UA 3I9TA 2Q32A 2QCXA 3HLXA 4NY7A 1XK0A 1XK3A 1WNVA 4G8UA 3RM5A 2DY5A 4G8WA 2ZVUA 3HMLA 2GM7A 1TO9B 1UDDA 1XJZA 4LQXA 1WNWA 4WWJA 1YAFA 3TGMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WWM A;  4RAJ A;  1OTW A;  1WOV A;  3I8R A;  1WE1 A;  3I9U A;  4GPC A;  3HNH A;  3BJD A;  1WZF A;  4G7L A;  1WZD A;  2A2M A;  1WNX A;  1OYL A;  1P3U A;  2Z68 A;  1J77 A;  4MEC A;  4WMH A;  1OTV A;  1OZL A;  2E7E A;  3MOO A;  4GOH A;  1VGI A;  4G7T A;  3IBX A;  2A6B A;  1S8C A;  2RGZ A;  4G8P A;  1P3V A;  4WWZ A;  2F2G A;  3B5P A;  2QZC A;  1TYH A;  4G99 A;  1NI6 A;  1S13 A;  4WX0 A;  4GPF A;  1J02 A;  1WOW A;  1IRM A;  1OYK A;  1IW0 A;  5BTQ A;  1ULX A;  2QPP A;  3OQL A;  1OZR A;  1OZE A;  2RD3 A;  4G7U A;  3NO6 A;  4FN6 A;  3CZY A;  1IX4 A;  1TO9 A;  1XK2 A;  4WD4 A;  1OZW A;  3B5O A;  2A2O A;  1SK7 A;  2Q4X A;  2GM8 A;  3MVU A;  1N45 A;  1RCW A;  4GPH A;  3DDE A;  1DVE A;  1P3T A;  1UBB A;  1IX3 A;  1Z72 A;  1J2C A;  1YAK A;  1RTW A;  1TWN A;  1XK1 A;  4G7P A;  1IW1 A;  1WZG A;  4G98 A;  1IVJ A;  1TWR A;  3K4F A;  1V8X A;  1WOX A;  1T5P A;  3HOK A;  1DVG A;  1N3U A;  3I9T A;  2Q32 A;  2QCX A;  3HLX A;  4NY7 A;  1XK0 A;  1XK3 A;  1WNV A;  4G8U A;  3RM5 A;  2DY5 A;  4G8W A;  2ZVU A;  3HML A;  2GM7 A;  1TO9 B;  1UDD A;  1XJZ A;  4LQX A;  1WNW A;  4WWJ A;  1YAF A;  3TGM A; 
#chains in the Genus database with same CATH topology
 1WWM A;  4RAJ A;  1OTW A;  1WOV A;  3I8R A;  1WE1 A;  3I9U A;  4GPC A;  3HNH A;  3BJD A;  1WZF A;  4G7L A;  1WZD A;  2A2M A;  1WNX A;  1OYL A;  1P3U A;  2Z68 A;  1J77 A;  4MEC A;  4WMH A;  1OTV A;  1OZL A;  2E7E A;  3MOO A;  4GOH A;  1VGI A;  4G7T A;  3IBX A;  2A6B A;  1S8C A;  2RGZ A;  4G8P A;  1P3V A;  4WWZ A;  2F2G A;  3B5P A;  2QZC A;  1TYH A;  4G99 A;  1NI6 A;  1S13 A;  4WX0 A;  4GPF A;  1J02 A;  1WOW A;  1IRM A;  1OYK A;  1IW0 A;  5BTQ A;  1ULX A;  2QPP A;  3OQL A;  1OZR A;  1OZE A;  2RD3 A;  4G7U A;  3NO6 A;  4FN6 A;  3CZY A;  1IX4 A;  1TO9 A;  1XK2 A;  4WD4 A;  1OZW A;  3B5O A;  2A2O A;  1SK7 A;  2Q4X A;  2GM8 A;  3MVU A;  2LCU A;  1N45 A;  1RCW A;  4GPH A;  3DDE A;  1DVE A;  1P3T A;  1UBB A;  1IX3 A;  1Z72 A;  1J2C A;  1YAK A;  1RTW A;  1TWN A;  1XK1 A;  4G7P A;  1IW1 A;  1WZG A;  4G98 A;  1IVJ A;  1TWR A;  3K4F A;  1V8X A;  1WOX A;  1T5P A;  3HOK A;  1DVG A;  1N3U A;  3I9T A;  2Q32 A;  2QCX A;  3HLX A;  4NY7 A;  1XK0 A;  1XK3 A;  1WNV A;  4G8U A;  3RM5 A;  2DY5 A;  4G8W A;  2ZVU A;  3HML A;  2GM7 A;  1TO9 B;  1UDD A;  1XJZ A;  4LQX A;  1WNW A;  4WWJ A;  1YAF A;  3TGM A; 
#chains in the Genus database with same CATH homology
 1WWM A;  4RAJ A;  1OTW A;  1WOV A;  3I8R A;  1WE1 A;  3I9U A;  4GPC A;  3HNH A;  3BJD A;  1WZF A;  4G7L A;  1WZD A;  2A2M A;  1WNX A;  1OYL A;  1P3U A;  2Z68 A;  1J77 A;  4MEC A;  4WMH A;  1OTV A;  1OZL A;  2E7E A;  3MOO A;  4GOH A;  1VGI A;  4G7T A;  3IBX A;  2A6B A;  1S8C A;  2RGZ A;  4G8P A;  1P3V A;  4WWZ A;  2F2G A;  3B5P A;  2QZC A;  1TYH A;  4G99 A;  1NI6 A;  1S13 A;  4WX0 A;  4GPF A;  1J02 A;  1WOW A;  1IRM A;  1OYK A;  1IW0 A;  5BTQ A;  1ULX A;  2QPP A;  3OQL A;  1OZR A;  1OZE A;  2RD3 A;  4G7U A;  3NO6 A;  4FN6 A;  3CZY A;  1IX4 A;  1TO9 A;  1XK2 A;  4WD4 A;  1OZW A;  3B5O A;  2A2O A;  1SK7 A;  2Q4X A;  2GM8 A;  3MVU A;  1N45 A;  1RCW A;  4GPH A;  3DDE A;  1DVE A;  1P3T A;  1UBB A;  1IX3 A;  1Z72 A;  1J2C A;  1YAK A;  1RTW A;  1TWN A;  1XK1 A;  4G7P A;  1IW1 A;  1WZG A;  4G98 A;  1IVJ A;  1TWR A;  3K4F A;  1V8X A;  1WOX A;  1T5P A;  3HOK A;  1DVG A;  1N3U A;  3I9T A;  2Q32 A;  2QCX A;  3HLX A;  4NY7 A;  1XK0 A;  1XK3 A;  1WNV A;  4G8U A;  3RM5 A;  2DY5 A;  4G8W A;  2ZVU A;  3HML A;  2GM7 A;  1TO9 B;  1UDD A;  1XJZ A;  4LQX A;  1WNW A;  4WWJ A;  1YAF A;  3TGM A; 
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similar chains in the pdb database (?% sequence similarity)

 
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