1YAVA

Crystal structure of cbs domain-containing protein ykul from bacillus subtilis
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
134
structure length
134
Chain Sequence
LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein BSU14130
publication title Crystal Structure of a hypothetical protein (ykul) containing CBS domains from Bacillus subtilis.
rcsb
source organism Bacillus subtilis
total genus 33
structure length 134
sequence length 134
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 1yavA00
2QRDE 2RIHA 4GQYA 3KPCA 4IY4A 3PC3A 4IYSA 3LHHA 2YVYA 2UV5A 4P1GA 2QLVC 4P1OA 3HF7A 4GQVA 4GQWA 3OI8A 3OCMA 5K23C 2NYEA 5LXQA 3GBYA 2QRCE 2EMQA 3K6EA 2OUXA 2QREE 2UV7A 4L0DA 2P9MA 4DQWA 3T4NC 2YZIA 4ESYB 2YVZA 4L27A 2OOYE 3SL7A 1PBJA 3KPDA 3L31A 3L2BA 3FV6A 2OOXE 4IY3A 1O50A 2YVXA 2PFIA 2QR1E 3FNAA 3TDHC 4PCUA 2ZY9A 4COOA 3PC2A 5MMZA 3LV9A 1YAVA 2NYCA 4L3VA 2RC3A 1PVMA 2O16A 5K22B 2QH1A 3LQNA 4IY2A 3ORGA 2UV4A 5K24C 3PC4A 4IY0A 4O9KA 1XKFA 4HG0A 5IIPA 3TE5C 1Y5HA 3DDJA 4UUUA 3KXRA 3FWSA 3LFZA 3KH5A 2D4ZA 4FXSA 4NOCA 2RIFA 2UV6A 5K25C 3K2VA 3I8NA 2EF7A 4ESYA 4FRYA 3FHMA 3OCOA 2YZQA 3FWRA 3KPBA 5KS7A 4L28A
chains in the Genus database with same CATH superfamily
2QRDE 2RIHA 4GQYA 3KPCA 4IY4A 3PC3A 4IYSA 3LHHA 2YVYA 2UV5A 4P1GA 2QLVC 4P1OA 3HF7A 4GQVA 4GQWA 3OI8A 3OCMA 5K23C 2NYEA 5LXQA 3GBYA 2QRCE 2EMQA 3K6EA 2OUXA 2QREE 2UV7A 4L0DA 2P9MA 4DQWA 3T4NC 2YZIA 4ESYB 2YVZA 4L27A 2OOYE 3SL7A 1PBJA 3KPDA 3L31A 3L2BA 3FV6A 2OOXE 4IY3A 1O50A 2YVXA 2PFIA 2QR1E 3FNAA 3TDHC 4PCUA 2ZY9A 4COOA 3PC2A 5MMZA 3LV9A 1YAVA 2NYCA 4L3VA 2RC3A 1PVMA 2O16A 5K22B 2QH1A 3LQNA 4IY2A 3ORGA 2UV4A 5K24C 3PC4A 4IY0A 4O9KA 1XKFA 4HG0A 5IIPA 3TE5C 1Y5HA 3DDJA 4UUUA 3KXRA 3FWSA 3LFZA 3KH5A 2D4ZA 4FXSA 4NOCA 2J9LA 2RIFA 2UV6A 5K25C 3K2VA 3I8NA 2EF7A 4ESYA 2JA3A 4FRYA 3FHMA 3OCOA 2YZQA 3FWRA 3KPBA 5KS7A 4L28A
chains in the Genus database with same CATH topology
2QRDE 2RIHA 4GQYA 3KPCA 4IY4A 3PC3A 4IYSA 3LHHA 2YVYA 2UV5A 4P1GA 2QLVC 4P1OA 3HF7A 4GQVA 4GQWA 3OI8A 3OCMA 5K23C 2NYEA 5LXQA 3GBYA 2QRCE 2EMQA 3K6EA 2OUXA 2QREE 2UV7A 4L0DA 2P9MA 4DQWA 3T4NC 2YZIA 4ESYB 2YVZA 4L27A 2OOYE 3SL7A 1PBJA 3KPDA 3L31A 3L2BA 3FV6A 2OOXE 4IY3A 1O50A 2YVXA 2PFIA 2QR1E 3FNAA 3TDHC 4PCUA 2ZY9A 4COOA 3PC2A 5MMZA 3LV9A 1YAVA 2NYCA 4L3VA 2RC3A 1PVMA 2O16A 5K22B 2QH1A 3LQNA 4IY2A 3ORGA 2UV4A 5K24C 3PC4A 4IY0A 4O9KA 1XKFA 4HG0A 5IIPA 3TE5C 1Y5HA 3DDJA 4UUUA 3KXRA 3FWSA 3LFZA 3KH5A 2D4ZA 4FXSA 4NOCA 2J9LA 2RIFA 2UV6A 5K25C 3K2VA 3I8NA 2EF7A 4ESYA 2JA3A 4FRYA 3FHMA 3OCOA 2YZQA 3FWRA 3KPBA 5KS7A 4L28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QRD E;  2RIH A;  4GQY A;  3KPC A;  4IY4 A;  3PC3 A;  4IYS A;  3LHH A;  2YVY A;  2UV5 A;  4P1G A;  2QLV C;  4P1O A;  3HF7 A;  4GQV A;  4GQW A;  3OI8 A;  3OCM A;  5K23 C;  2NYE A;  5LXQ A;  3GBY A;  2QRC E;  2EMQ A;  3K6E A;  2OUX A;  2QRE E;  2UV7 A;  4L0D A;  2P9M A;  4DQW A;  3T4N C;  2YZI A;  4ESY B;  2YVZ A;  4L27 A;  2OOY E;  3SL7 A;  1PBJ A;  3KPD A;  3L31 A;  3L2B A;  3FV6 A;  2OOX E;  4IY3 A;  1O50 A;  2YVX A;  2PFI A;  2QR1 E;  3FNA A;  3TDH C;  4PCU A;  2ZY9 A;  4COO A;  3PC2 A;  5MMZ A;  3LV9 A;  1YAV A;  2NYC A;  4L3V A;  2RC3 A;  1PVM A;  2O16 A;  5K22 B;  2QH1 A;  3LQN A;  4IY2 A;  3ORG A;  2UV4 A;  5K24 C;  3PC4 A;  4IY0 A;  4O9K A;  1XKF A;  4HG0 A;  5IIP A;  3TE5 C;  1Y5H A;  3DDJ A;  4UUU A;  3KXR A;  3FWS A;  3LFZ A;  3KH5 A;  2D4Z A;  4FXS A;  4NOC A;  2RIF A;  2UV6 A;  5K25 C;  3K2V A;  3I8N A;  2EF7 A;  4ESY A;  4FRY A;  3FHM A;  3OCO A;  2YZQ A;  3FWR A;  3KPB A;  5KS7 A;  4L28 A; 
#chains in the Genus database with same CATH topology
 2QRD E;  2RIH A;  4GQY A;  3KPC A;  4IY4 A;  3PC3 A;  4IYS A;  3LHH A;  2YVY A;  2UV5 A;  4P1G A;  2QLV C;  4P1O A;  3HF7 A;  4GQV A;  4GQW A;  3OI8 A;  3OCM A;  5K23 C;  2NYE A;  5LXQ A;  3GBY A;  2QRC E;  2EMQ A;  3K6E A;  2OUX A;  2QRE E;  2UV7 A;  4L0D A;  2P9M A;  4DQW A;  3T4N C;  2YZI A;  4ESY B;  2YVZ A;  4L27 A;  2OOY E;  3SL7 A;  1PBJ A;  3KPD A;  3L31 A;  3L2B A;  3FV6 A;  2OOX E;  4IY3 A;  1O50 A;  2YVX A;  2PFI A;  2QR1 E;  3FNA A;  3TDH C;  4PCU A;  2ZY9 A;  4COO A;  3PC2 A;  5MMZ A;  3LV9 A;  1YAV A;  2NYC A;  4L3V A;  2RC3 A;  1PVM A;  2O16 A;  5K22 B;  2QH1 A;  3LQN A;  4IY2 A;  3ORG A;  2UV4 A;  5K24 C;  3PC4 A;  4IY0 A;  4O9K A;  1XKF A;  4HG0 A;  5IIP A;  3TE5 C;  1Y5H A;  3DDJ A;  4UUU A;  3KXR A;  3FWS A;  3LFZ A;  3KH5 A;  2D4Z A;  4FXS A;  4NOC A;  2J9L A;  2RIF A;  2UV6 A;  5K25 C;  3K2V A;  3I8N A;  2EF7 A;  4ESY A;  2JA3 A;  4FRY A;  3FHM A;  3OCO A;  2YZQ A;  3FWR A;  3KPB A;  5KS7 A;  4L28 A; 
#chains in the Genus database with same CATH homology
 2QRD E;  2RIH A;  4GQY A;  3KPC A;  4IY4 A;  3PC3 A;  4IYS A;  3LHH A;  2YVY A;  2UV5 A;  4P1G A;  2QLV C;  4P1O A;  3HF7 A;  4GQV A;  4GQW A;  3OI8 A;  3OCM A;  5K23 C;  2NYE A;  5LXQ A;  3GBY A;  2QRC E;  2EMQ A;  3K6E A;  2OUX A;  2QRE E;  2UV7 A;  4L0D A;  2P9M A;  4DQW A;  3T4N C;  2YZI A;  4ESY B;  2YVZ A;  4L27 A;  2OOY E;  3SL7 A;  1PBJ A;  3KPD A;  3L31 A;  3L2B A;  3FV6 A;  2OOX E;  4IY3 A;  1O50 A;  2YVX A;  2PFI A;  2QR1 E;  3FNA A;  3TDH C;  4PCU A;  2ZY9 A;  4COO A;  3PC2 A;  5MMZ A;  3LV9 A;  1YAV A;  2NYC A;  4L3V A;  2RC3 A;  1PVM A;  2O16 A;  5K22 B;  2QH1 A;  3LQN A;  4IY2 A;  3ORG A;  2UV4 A;  5K24 C;  3PC4 A;  4IY0 A;  4O9K A;  1XKF A;  4HG0 A;  5IIP A;  3TE5 C;  1Y5H A;  3DDJ A;  4UUU A;  3KXR A;  3FWS A;  3LFZ A;  3KH5 A;  2D4Z A;  4FXS A;  4NOC A;  2J9L A;  2RIF A;  2UV6 A;  5K25 C;  3K2V A;  3I8N A;  2EF7 A;  4ESY A;  2JA3 A;  4FRY A;  3FHM A;  3OCO A;  2YZQ A;  3FWR A;  3KPB A;  5KS7 A;  4L28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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