1YBEA

Crystal structure of a nicotinate phosphoribosyltransferase
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
426
structure length
416
Chain Sequence
MTKTDIATRWKLDPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPLKPISIVCKVSDANGRPAVKLSDNPQKATGDPAEVERYLKFFGEED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Nicotinate phosphoribosyltransferase
publication title Crystal Structure of a Nicotinate phosphoribosyltransferase
rcsb
source organism Agrobacterium tumefaciens
total genus 145
structure length 416
sequence length 426
chains with identical sequence B
ec nomenclature ec 6.3.4.21: Nicotinate phosphoribosyltransferase.
pdb deposition date 2004-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04095 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family
A PF17767 NAPRTase_N Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.140.10 Alpha Beta Alpha-Beta Barrel nicotinate phosphoribosyltransferase nicotinate phosphoribosyltransferase 1ybeA00
1VLPA 2F7FA 1YBEA 3OS4A 4MZYA 4YUBA 1YIRA 2IM5A 4HL7A
chains in the Genus database with same CATH superfamily
1VLPA 2F7FA 1YBEA 3OS4A 4MZYA 4YUBA 1YIRA 2IM5A 4HL7A
chains in the Genus database with same CATH topology
1VLPA 2F7FA 1YBEA 3OS4A 4MZYA 4YUBA 1YIRA 2IM5A 4HL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VLP A;  2F7F A;  1YBE A;  3OS4 A;  4MZY A;  4YUB A;  1YIR A;  2IM5 A;  4HL7 A; 
#chains in the Genus database with same CATH topology
 1VLP A;  2F7F A;  1YBE A;  3OS4 A;  4MZY A;  4YUB A;  1YIR A;  2IM5 A;  4HL7 A; 
#chains in the Genus database with same CATH homology
 1VLP A;  2F7F A;  1YBE A;  3OS4 A;  4MZY A;  4YUB A;  1YIR A;  2IM5 A;  4HL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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