1YBZA

Conserved hypothetical protein from pyrococcus furiosus pfu-1581948-001
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
76
structure length
76
Chain Sequence
GSTTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords chorismate mutase
publication title Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001
rcsb
source organism Pyrococcus furiosus
total genus 31
structure length 76
sequence length 76
ec nomenclature ec 5.4.99.5: Chorismate mutase.
pdb deposition date 2004-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01817 CM_2 Chorismate mutase type II
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.59.10 Mainly Alpha Up-down Bundle Chorismate Mutase Domain, subunit A Chorismate mutase 1ybzA00
3HGXA 2W19C 2QBVA 3RMIA 1YBZA 5CKXC 3TFCA 2H9CA 2D8DA 1ECMA 2GTVX 2H9DA 2VKLA 3NVTA 2W1AC 2D8EA 3REMA 3RETA 3HGWA
chains in the Genus database with same CATH superfamily
3HGXA 2E89A 2W19C 2E21A 2QBVA 3RMIA 1YBZA 5CKXC 3TFCA 2H9CA 2D8DA 1ECMA 1NI5A 2GTVX 2H9DA 2VKLA 3NVTA 2W1AC 2D8EA 3A2KA 1WY5A 3REMA 3RETA 3HGWA
chains in the Genus database with same CATH topology
3HGXA 2W19C 2QBVA 3RMIA 1YBZA 5CKXC 3TFCA 2H9CA 2D8DA 1ECMA 2GTVX 2H9DA 2VKLA 3NVTA 2W1AC 2D8EA 3REMA 3RETA 3HGWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGX A;  2W19 C;  2QBV A;  3RMI A;  1YBZ A;  5CKX C;  3TFC A;  2H9C A;  2D8D A;  1ECM A;  2GTV X;  2H9D A;  2VKL A;  3NVT A;  2W1A C;  2D8E A;  3REM A;  3RET A;  3HGW A; 
#chains in the Genus database with same CATH topology
 3HGX A;  2E89 A;  2W19 C;  2E21 A;  2QBV A;  3RMI A;  1YBZ A;  5CKX C;  3TFC A;  2H9C A;  2D8D A;  1ECM A;  1NI5 A;  2GTV X;  2H9D A;  2VKL A;  3NVT A;  2W1A C;  2D8E A;  3A2K A;  1WY5 A;  3REM A;  3RET A;  3HGW A; 
#chains in the Genus database with same CATH homology
 3HGX A;  2W19 C;  2QBV A;  3RMI A;  1YBZ A;  5CKX C;  3TFC A;  2H9C A;  2D8D A;  1ECM A;  2GTV X;  2H9D A;  2VKL A;  3NVT A;  2W1A C;  2D8E A;  3REM A;  3RET A;  3HGW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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