1YCNA

X-ray structure of annexin from arabidopsis thaliana gene at1g35720
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
317
structure length
312
Chain Sequence
SATLKVSDSVPAPSDDAEQLRTAFEEDLIISILAHRSAEQRKVIRQAYHETYGEDLLKTLDKELSNDFERAILLWTLEPGERDALLANEATKRWTSSNQVLMEVACTRTSTQLLHARQAYHARYKKSLEEDVAHHTTGDFRKLLVSLVTSYRYEGDEVNMTLAKQEAKLVHEKIKDKHYNDEDVIRILSTRSKAQINATFNRYQDDHGEEILKSLEEGDDDDKFLALLRSTIQCLTRPELYFVDVLRSAINKTGTDEGALTRIVTTRAEIDLKVIGEEYQRRNSIPLEKAITKDTRGDYEKMLVALLGEDDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords putative Ca2+-dependent membrane-binding protein annexin
publication title X-RAY STRUCTURE OF ANNEXIN FROM ARABIDOPSIS THALIANA GENE AT1G35720
rcsb
source organism Arabidopsis thaliana
total genus 120
structure length 312
sequence length 317
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1ycnA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1ycnA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1ycnA03
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1ycnA01
1HAKA 2Q4CA 1BO9A 4EVHA 1DK5A 1YCNA 1HVGA 1BCZA 1N42A 2H0MA 1BCWA 1AOWA 1AVHA 1AXNA 1HVEA 2IE6A 2HYVA 1XJLA 2ZHJA 1HVFA 1YJ0A 1ANNA 1BC1A 4EVFA 1ALAA 1ANWA 1AVCA 1DM5A 2HYWA 4MDVA 1W7BA 4MDUA 2H0LA 2XO3A 2H0KA 1BC3A 2RANA 2ZHIA 2ZOCA 4HREA 1AIIA 1A8AA 1BCYA 1N44A 2IE7A 2II2A 2IICA 1G5NA 2XO2A 1HM6A 2HYUA 1W3WA 3BRXA 1I4AA 1HVDA 1AVRA 4X9PA 1ANXA 1M9IA 1AEIA 1W45A 1A8BA 1MCXA 1SAVA 1YIIA 1N41A 1N00A 1BC0A
chains in the Genus database with same CATH superfamily
1BO9A 1DK5A 1HVGA 1C1KA 1XSZA 2ZHJA 1XT0B 1BC1A 4EVFA 1ALAA 1DM5A 4MDUA 3ABRA 2XO3A 4KN7X 1A8AA 1BCYA 4KN4X 2IE7A 1W45A 3ANYA 4FHRB 1LKVX 1MCXA 3SOHB 1BC0A 1YCNA 1AOWA 1R8ME 4C7PA 1XJLA 1YJ0A 2R0DA 4MDVA 3ABSA 2H0LA 3HJLA 1BC3A 2ZHIA 1AIIA 2HSNA 2XO2A 4JMOA 1W3WA 1I4AA 1HVDA 4JWLA 1S9DE 3ABQA 4X9PA 2R09A 1ANXA 4D7RA 1AEIA 1A8BA 4JXHA 3AJCA 1N41A 1R4AE 3L8NA 4EVHA 1QC7A 2H0MA 1BCWA 1R8SE 1PBVA 2IE6A 1HVEA 2K6XA 3USWA 1ANWA 4FQ0C 4A4PA 4Q2SA 2H0KA 3AO0A 4D7QA 3USYA 1YGMA 2HYUA 3TW5A 2VXGA 1AVRA 1M9IA 1SAVA 1RE0B 1HAKA 2Q4CA 1BCZA 1N42A 4JMIA 4OIYA 1AVHA 1AXNA 1UPTB 2HYVA 1HVFA 3LTLA 1ANNA 1BC9A 1AVCA 2HYWA 2QEZA 1Q8DA 1W7BA 3SWVA 2OY9A 4Z21A 4JK1X 2RANA 2ZOCA 4HREA 1N44A 2II2A 2IICA 1G5NA 1HM6A 1R8QE 3BRXA 4L5MA 4KMUX 1KU1A 3ABOA 4C0AA 1YIIA 1N00A
chains in the Genus database with same CATH topology
1HAKA 2Q4CA 1BO9A 4EVHA 1DK5A 1YCNA 1HVGA 1BCZA 1N42A 2H0MA 1BCWA 1AOWA 1AVHA 1AXNA 1HVEA 2IE6A 2HYVA 1XJLA 2ZHJA 1HVFA 1YJ0A 1ANNA 1BC1A 4EVFA 1ALAA 1ANWA 1AVCA 1DM5A 2HYWA 4MDVA 1W7BA 4MDUA 2H0LA 2XO3A 2H0KA 1BC3A 2RANA 2ZHIA 2ZOCA 4HREA 1AIIA 1A8AA 1BCYA 1N44A 2IE7A 2II2A 2IICA 1G5NA 2XO2A 1HM6A 2HYUA 1W3WA 3BRXA 1I4AA 1HVDA 1AVRA 4X9PA 1ANXA 1M9IA 1AEIA 1W45A 1A8BA 1MCXA 1SAVA 1YIIA 1N41A 1N00A 1BC0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HAK A;  2Q4C A;  1BO9 A;  4EVH A;  1DK5 A;  1YCN A;  1HVG A;  1BCZ A;  1N42 A;  2H0M A;  1BCW A;  1AOW A;  1AVH A;  1AXN A;  1HVE A;  2IE6 A;  2HYV A;  1XJL A;  2ZHJ A;  1HVF A;  1YJ0 A;  1ANN A;  1BC1 A;  4EVF A;  1ALA A;  1ANW A;  1AVC A;  1DM5 A;  2HYW A;  4MDV A;  1W7B A;  4MDU A;  2H0L A;  2XO3 A;  2H0K A;  1BC3 A;  2RAN A;  2ZHI A;  2ZOC A;  4HRE A;  1AII A;  1A8A A;  1BCY A;  1N44 A;  2IE7 A;  2II2 A;  2IIC A;  1G5N A;  2XO2 A;  1HM6 A;  2HYU A;  1W3W A;  3BRX A;  1I4A A;  1HVD A;  1AVR A;  4X9P A;  1ANX A;  1M9I A;  1AEI A;  1W45 A;  1A8B A;  1MCX A;  1SAV A;  1YII A;  1N41 A;  1N00 A;  1BC0 A; 
#chains in the Genus database with same CATH topology
 1BO9 A;  1DK5 A;  1HVG A;  1C1K A;  1XSZ A;  2ZHJ A;  1XT0 B;  1BC1 A;  4EVF A;  1ALA A;  1DM5 A;  4MDU A;  3ABR A;  2XO3 A;  4KN7 X;  1A8A A;  1BCY A;  4KN4 X;  2IE7 A;  1W45 A;  3ANY A;  4FHR B;  1LKV X;  1MCX A;  3SOH B;  1BC0 A;  1YCN A;  1AOW A;  1R8M E;  4C7P A;  1XJL A;  1YJ0 A;  2R0D A;  4MDV A;  3ABS A;  2H0L A;  3HJL A;  1BC3 A;  2ZHI A;  1AII A;  2HSN A;  2XO2 A;  4JMO A;  1W3W A;  1I4A A;  1HVD A;  4JWL A;  1S9D E;  3ABQ A;  4X9P A;  2R09 A;  1ANX A;  4D7R A;  1AEI A;  1A8B A;  4JXH A;  3AJC A;  1N41 A;  1R4A E;  3L8N A;  4EVH A;  1QC7 A;  2H0M A;  1BCW A;  1R8S E;  1PBV A;  2IE6 A;  1HVE A;  2K6X A;  3USW A;  1ANW A;  4FQ0 C;  4A4P A;  4Q2S A;  2H0K A;  3AO0 A;  4D7Q A;  3USY A;  1YGM A;  2HYU A;  3TW5 A;  2VXG A;  1AVR A;  1M9I A;  1SAV A;  1RE0 B;  1HAK A;  2Q4C A;  1BCZ A;  1N42 A;  4JMI A;  4OIY A;  1AVH A;  1AXN A;  1UPT B;  2HYV A;  1HVF A;  3LTL A;  1ANN A;  1BC9 A;  1AVC A;  2HYW A;  2QEZ A;  1Q8D A;  1W7B A;  3SWV A;  2OY9 A;  4Z21 A;  4JK1 X;  2RAN A;  2ZOC A;  4HRE A;  1N44 A;  2II2 A;  2IIC A;  1G5N A;  1HM6 A;  1R8Q E;  3BRX A;  4L5M A;  4KMU X;  1KU1 A;  3ABO A;  4C0A A;  1YII A;  1N00 A; 
#chains in the Genus database with same CATH homology
 1HAK A;  2Q4C A;  1BO9 A;  4EVH A;  1DK5 A;  1YCN A;  1HVG A;  1BCZ A;  1N42 A;  2H0M A;  1BCW A;  1AOW A;  1AVH A;  1AXN A;  1HVE A;  2IE6 A;  2HYV A;  1XJL A;  2ZHJ A;  1HVF A;  1YJ0 A;  1ANN A;  1BC1 A;  4EVF A;  1ALA A;  1ANW A;  1AVC A;  1DM5 A;  2HYW A;  4MDV A;  1W7B A;  4MDU A;  2H0L A;  2XO3 A;  2H0K A;  1BC3 A;  2RAN A;  2ZHI A;  2ZOC A;  4HRE A;  1AII A;  1A8A A;  1BCY A;  1N44 A;  2IE7 A;  2II2 A;  2IIC A;  1G5N A;  2XO2 A;  1HM6 A;  2HYU A;  1W3W A;  3BRX A;  1I4A A;  1HVD A;  1AVR A;  4X9P A;  1ANX A;  1M9I A;  1AEI A;  1W45 A;  1A8B A;  1MCX A;  1SAV A;  1YII A;  1N41 A;  1N00 A;  1BC0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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