1YFEA

Crystal structure of apo fumarase c from escherichia coli
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
457
structure length
457
Chain Sequence
b'VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Fumarate hydratase class II
publication title Structure of free fumarase C from Escherichia coli.
pubmed doi rcsb
molecule tags Lyase
total genus 167
structure length 457
sequence length 457
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2004-12-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1yfeA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yfeA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yfeA02
2RJSA 4ADLA 4V2QA 1FUQA 3C8TA 4HGVA 4CQ5A 4APAA 1Q5NA 2O7EA 4V2RA 3RRPA 4C5RA 2O7DA 1JSWA 5F92A 1W27A 1U15A 2O78A 1I0AA 5EYVA 5F91A 3CZOA 1GK2A 3BHGA 5EYTA 1T6JA 2NYNA 2O7BA 2PTRA 4APBA 2E9FA 3NZ4A 2X75A 2PFMA 2O6YA 1TJ7A 1TJWA 3OCFA 2QVEA 4FLCA 2VD6A 5HW2A 1YISA 3UNVA 1T6PA 2O7FA 3TV2A 1YFMA 4BABA 4BAAA 1AUWA 1FURA 1DOFA 2HVGA 1HY0A 4MX2A 4EEIA 1GKMA 1HY1A 1VDKA 1K62A 2RJRA 4C5UA 2OHYA 4C5SA 1YFEA 4FFXA 2QGAB 3KDZA 1GK3A 4C6GA 4EFCA 1TJVA 1TJUA 3E04A 1Y2MA 3R6YA 1KQ7A 4NSLA 1FUPA 1FUOA 2PTSA 1EB4A 2FUSA 4ADMA 3OCEA 3QBPA 3GZHA 1U16A 1RE5A 2NYFA 3RD8A 2J91A 1B8FA 5D6BA 1K7WA 4NLEA 1J3UA 2PTQA 3KDYA 1GKJA 3GTDA 2YIIA 3NO9A 3R6VA 1DCNA 1XWOA 1C3UA 1C3CA 3R6QA
chains in the Genus database with same CATH superfamily
2RJSA 4ADLA 4V2QA 1FUQA 3C8TA 4HGVA 3U19A 4CQ5A 4APAA 1XMCA 1Z4JA 1Q5NA 4MUMA 2O7EA 1U0LA 4V2RA 3RRPA 4C5RA 4L57A 2O7DA 4A15A 1JSWA 4NFLA 5F92A 4E88A 1U15A 1W27A 2O78A 1I0AA 5EYVA 5F91A 4MWOA 1GK2A 2JAWA 3CZOA 3BHGA 2I7DA 4WNLA 5EYTA 1T6JA 2NYNA 1Z4QA 1XLYA 2O7BA 2PTRA 4APBA 2E9FA 3NZ4A 2X75A 2PFMA 2O6YA 4L6CA 3F4RA 1TJ7A 1TJWA 2D27A 3OCFA 2QVEA 4FLCA 2VD6A 3U13A 5HW2A 1YISA 3UNVA 1T6PA 2O7FA 3TV2A 1YFMA 1IW7D 1XL8A 2JAUA 4BAAA 4BABA 2D28C 1AUWA 2VL7A 1Z4MA 1FURA 1DOFA 2HVGA 1HY0A 4MX2A 4EEIA 1GKMA 1HY1A 1VDKA 2FELA 1K62A 2RJRA 5M0JA 4C5UA 4IQJM 2OHYA 4C5SA 1YFEA 4FFXA 2QGAB 2FENA 1Z4LA 3KDZA 1GK3A 4C6GA 4EFCA 1TJVA 1TJUA 3E04A 1XMDA 1Y2MA 3R6YA 3F4TA 4YIKA 1T9HA 2JARA 2RCNA 3CRVA 5M0IA 1KQ7A 3CRW1 5H8WA 4NSLA 1FUPA 1FUOA 2PTSA 1EB4A 2FUSA 4ADMA 3OCEA 3QBPA 3GZHA 1U16A 1Q92A 1Z4PX 1RE5A 1Z4IA 2JAOA 2NYFA 4YIHA 3CI0K 3RD8A 2J91A 1B8FA 5D6BA 1K7WA 1Z4KA 4NLEA 1J3UA 2VSFA 1Q91A 2PTQA 3KDYA 1GKJA 2YV5A 1MH9A 3GTDA 1XL7A 2YIIA 3NO9A 3R6VA 1DCNA 4L6AA 3F4SA 1XWOA 3BWVA 1C3UA 1C3CA 3R6QA
chains in the Genus database with same CATH topology
2RJSA 4ADLA 4V2QA 1FUQA 3C8TA 4HGVA 4CQ5A 4APAA 1Q5NA 2O7EA 4V2RA 3RRPA 4C5RA 2O7DA 1JSWA 5F92A 1W27A 1U15A 2O78A 1I0AA 5EYVA 5F91A 3CZOA 1GK2A 3BHGA 5EYTA 1T6JA 2NYNA 2O7BA 2PTRA 4APBA 2E9FA 3NZ4A 2X75A 2PFMA 2O6YA 1TJ7A 1TJWA 3OCFA 2QVEA 4FLCA 2VD6A 5HW2A 1YISA 3UNVA 1T6PA 2O7FA 3TV2A 1YFMA 4BABA 4BAAA 1AUWA 1FURA 1DOFA 2HVGA 1HY0A 4MX2A 4EEIA 1GKMA 1HY1A 1VDKA 1K62A 2RJRA 4C5UA 2OHYA 4C5SA 1YFEA 4FFXA 2QGAB 3KDZA 1GK3A 4C6GA 4EFCA 1TJVA 1TJUA 3E04A 1Y2MA 3R6YA 1KQ7A 4NSLA 1FUPA 1FUOA 2PTSA 1EB4A 2FUSA 4ADMA 3OCEA 3QBPA 3GZHA 1U16A 1RE5A 2NYFA 3RD8A 2J91A 1B8FA 5D6BA 1K7WA 4NLEA 1J3UA 2PTQA 3KDYA 1GKJA 3GTDA 2YIIA 3NO9A 3R6VA 1DCNA 1XWOA 1C3UA 1C3CA 3R6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RJS A;  4ADL A;  4V2Q A;  1FUQ A;  3C8T A;  4HGV A;  4CQ5 A;  4APA A;  1Q5N A;  2O7E A;  4V2R A;  3RRP A;  4C5R A;  2O7D A;  1JSW A;  5F92 A;  1W27 A;  1U15 A;  2O78 A;  1I0A A;  5EYV A;  5F91 A;  3CZO A;  1GK2 A;  3BHG A;  5EYT A;  1T6J A;  2NYN A;  2O7B A;  2PTR A;  4APB A;  2E9F A;  3NZ4 A;  2X75 A;  2PFM A;  2O6Y A;  1TJ7 A;  1TJW A;  3OCF A;  2QVE A;  4FLC A;  2VD6 A;  5HW2 A;  1YIS A;  3UNV A;  1T6P A;  2O7F A;  3TV2 A;  1YFM A;  4BAB A;  4BAA A;  1AUW A;  1FUR A;  1DOF A;  2HVG A;  1HY0 A;  4MX2 A;  4EEI A;  1GKM A;  1HY1 A;  1VDK A;  1K62 A;  2RJR A;  4C5U A;  2OHY A;  4C5S A;  1YFE A;  4FFX A;  2QGA B;  3KDZ A;  1GK3 A;  4C6G A;  4EFC A;  1TJV A;  1TJU A;  3E04 A;  1Y2M A;  3R6Y A;  1KQ7 A;  4NSL A;  1FUP A;  1FUO A;  2PTS A;  1EB4 A;  2FUS A;  4ADM A;  3OCE A;  3QBP A;  3GZH A;  1U16 A;  1RE5 A;  2NYF A;  3RD8 A;  2J91 A;  1B8F A;  5D6B A;  1K7W A;  4NLE A;  1J3U A;  2PTQ A;  3KDY A;  1GKJ A;  3GTD A;  2YII A;  3NO9 A;  3R6V A;  1DCN A;  1XWO A;  1C3U A;  1C3C A;  3R6Q A; 
#chains in the Genus database with same CATH topology
 2RJS A;  4ADL A;  4V2Q A;  1FUQ A;  3C8T A;  4HGV A;  3U19 A;  4CQ5 A;  4APA A;  1XMC A;  1Z4J A;  1Q5N A;  4MUM A;  2O7E A;  1U0L A;  4V2R A;  3RRP A;  4C5R A;  4L57 A;  2O7D A;  4A15 A;  1JSW A;  4NFL A;  5F92 A;  4E88 A;  1U15 A;  1W27 A;  2O78 A;  1I0A A;  5EYV A;  5F91 A;  4MWO A;  1GK2 A;  2JAW A;  3CZO A;  3BHG A;  2I7D A;  4WNL A;  5EYT A;  1T6J A;  2NYN A;  1Z4Q A;  1XLY A;  2O7B A;  2PTR A;  4APB A;  2E9F A;  3NZ4 A;  2X75 A;  2PFM A;  2O6Y A;  4L6C A;  3F4R A;  1TJ7 A;  1TJW A;  2D27 A;  3OCF A;  2QVE A;  4FLC A;  2VD6 A;  3U13 A;  5HW2 A;  1YIS A;  3UNV A;  1T6P A;  2O7F A;  3TV2 A;  1YFM A;  1IW7 D;  1XL8 A;  2JAU A;  4BAA A;  4BAB A;  2D28 C;  1AUW A;  2VL7 A;  1Z4M A;  1FUR A;  1DOF A;  2HVG A;  1HY0 A;  4MX2 A;  4EEI A;  1GKM A;  1HY1 A;  1VDK A;  2FEL A;  1K62 A;  2RJR A;  5M0J A;  4C5U A;  4IQJ M;  2OHY A;  4C5S A;  1YFE A;  4FFX A;  2QGA B;  2FEN A;  1Z4L A;  3KDZ A;  1GK3 A;  4C6G A;  4EFC A;  1TJV A;  1TJU A;  3E04 A;  1XMD A;  1Y2M A;  3R6Y A;  3F4T A;  4YIK A;  1T9H A;  2JAR A;  2RCN A;  3CRV A;  5M0I A;  1KQ7 A;  3CRW 1;  5H8W A;  4NSL A;  1FUP A;  1FUO A;  2PTS A;  1EB4 A;  2FUS A;  4ADM A;  3OCE A;  3QBP A;  3GZH A;  1U16 A;  1Q92 A;  1Z4P X;  1RE5 A;  1Z4I A;  2JAO A;  2NYF A;  4YIH A;  3CI0 K;  3RD8 A;  2J91 A;  1B8F A;  5D6B A;  1K7W A;  1Z4K A;  4NLE A;  1J3U A;  2VSF A;  1Q91 A;  2PTQ A;  3KDY A;  1GKJ A;  2YV5 A;  1MH9 A;  3GTD A;  1XL7 A;  2YII A;  3NO9 A;  3R6V A;  1DCN A;  4L6A A;  3F4S A;  1XWO A;  3BWV A;  1C3U A;  1C3C A;  3R6Q A; 
#chains in the Genus database with same CATH homology
 2RJS A;  4ADL A;  4V2Q A;  1FUQ A;  3C8T A;  4HGV A;  4CQ5 A;  4APA A;  1Q5N A;  2O7E A;  4V2R A;  3RRP A;  4C5R A;  2O7D A;  1JSW A;  5F92 A;  1W27 A;  1U15 A;  2O78 A;  1I0A A;  5EYV A;  5F91 A;  3CZO A;  1GK2 A;  3BHG A;  5EYT A;  1T6J A;  2NYN A;  2O7B A;  2PTR A;  4APB A;  2E9F A;  3NZ4 A;  2X75 A;  2PFM A;  2O6Y A;  1TJ7 A;  1TJW A;  3OCF A;  2QVE A;  4FLC A;  2VD6 A;  5HW2 A;  1YIS A;  3UNV A;  1T6P A;  2O7F A;  3TV2 A;  1YFM A;  4BAB A;  4BAA A;  1AUW A;  1FUR A;  1DOF A;  2HVG A;  1HY0 A;  4MX2 A;  4EEI A;  1GKM A;  1HY1 A;  1VDK A;  1K62 A;  2RJR A;  4C5U A;  2OHY A;  4C5S A;  1YFE A;  4FFX A;  2QGA B;  3KDZ A;  1GK3 A;  4C6G A;  4EFC A;  1TJV A;  1TJU A;  3E04 A;  1Y2M A;  3R6Y A;  1KQ7 A;  4NSL A;  1FUP A;  1FUO A;  2PTS A;  1EB4 A;  2FUS A;  4ADM A;  3OCE A;  3QBP A;  3GZH A;  1U16 A;  1RE5 A;  2NYF A;  3RD8 A;  2J91 A;  1B8F A;  5D6B A;  1K7W A;  4NLE A;  1J3U A;  2PTQ A;  3KDY A;  1GKJ A;  3GTD A;  2YII A;  3NO9 A;  3R6V A;  1DCN A;  1XWO A;  1C3U A;  1C3C A;  3R6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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