1YFMA

Recombinant yeast fumarase
Total Genus 151
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
459
structure length
450
Chain Sequence
b'SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEIVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structures of native and recombinant yeast fumarase.
pubmed doi rcsb
molecule keywords FUMARASE
source organism Saccharomyces cerevisiae
molecule tags Lyase
total genus 151
structure length 450
sequence length 459
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 1998-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1yfmA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yfmA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yfmA02
1U16A 3GTDA 1U15A 1I0AA 5F91A 4MX2A 1FUOA 1XWOA 2NYNA 5F92A 1FUPA 1YISA 1DCNA 2O7FA 1K7WA 1TJVA 4APAA 1Q5NA 1GK2A 1C3UA 1TJUA 1TJ7A 2PTSA 3RD8A 2X75A 2FUSA 2YIIA 4C5RA 1GKJA 3QBPA 3OCEA 2QVEA 2O7DA 3NO9A 4ADMA 1DOFA 4V2QA 1HY1A 2PFMA 3BHGA 3NZ4A 3RRPA 2PTRA 5HW2A 4C6GA 2O78A 1J3UA 4HGVA 2QGAB 1AUWA 2O6YA 1VDKA 1KQ7A 1RE5A 1T6PA 5EYTA 5EYVA 1JSWA 1YFEA 1FURA 1B8FA 4C5UA 4EEIA 1C3CA 1K62A 2OHYA 3CZOA 1EB4A 4V2RA 4FLCA 4NLEA 3C8TA 2O7BA 4NSLA 3UNVA 1TJWA 4BABA 1Y2MA 3KDYA 1GK3A 1FUQA 2RJRA 2HVGA 3GZHA 3R6YA 1HY0A 1GKMA 4ADLA 2E9FA 5D6BA 3R6VA 2PTQA 4FFXA 2VD6A 2RJSA 1YFMA 3E04A 2NYFA 2J91A 3TV2A 1W27A 4EFCA 2O7EA 4C5SA 4CQ5A 4APBA 3OCFA 1T6JA 3KDZA 3R6QA 4BAAA
chains in the Genus database with same CATH superfamily
1U16A 1Z4JA 3GTDA 1U15A 1I0AA 5F91A 1Q91A 4MX2A 1XLYA 4L6CA 1FUOA 1XWOA 2NYNA 3F4SA 5F92A 1FUPA 1YISA 1DCNA 2O7FA 1K7WA 1TJVA 1Z4IA 4APAA 1Q5NA 2JAOA 3CI0K 1GK2A 2D27A 1C3UA 1TJUA 1U0LA 1TJ7A 2PTSA 1MH9A 3U19A 3RD8A 2I7DA 2JAWA 2X75A 2FUSA 2YIIA 5M0IA 4C5RA 4NFLA 3F4TA 1GKJA 3QBPA 3OCEA 2JARA 2QVEA 2O7DA 3NO9A 1XMCA 4YIHA 4ADMA 1DOFA 4V2QA 1HY1A 1Z4KA 2PFMA 3BHGA 1Z4PX 3RRPA 3NZ4A 2PTRA 5HW2A 2D28C 4C6GA 2O78A 1J3UA 1IW7D 4HGVA 2QGAB 1AUWA 2O6YA 1VDKA 1T9HA 1KQ7A 1RE5A 2FENA 1T6PA 5EYTA 5EYVA 3U13A 1JSWA 1YFEA 1XMDA 4L6AA 4IQJM 2FELA 4MUMA 4E88A 1FURA 1B8FA 4C5UA 4EEIA 1C3CA 1K62A 2OHYA 3CZOA 1EB4A 2VSFA 4V2RA 4FLCA 4MWOA 4NLEA 4YIKA 3C8TA 2O7BA 4NSLA 3UNVA 1TJWA 4BABA 1Y2MA 3KDYA 1GK3A 1Z4LA 1FUQA 2RJRA 2HVGA 3GZHA 3R6YA 2RCNA 1HY0A 2JAUA 1GKMA 4ADLA 3BWVA 1Z4QA 2E9FA 5D6BA 3R6VA 2PTQA 4FFXA 1XL8A 5H8WA 2VD6A 2RJSA 5M0JA 1YFMA 3E04A 2NYFA 2J91A 3TV2A 4A15A 1W27A 1XL7A 3F4RA 4EFCA 2O7EA 3CRW1 2YV5A 2VL7A 3CRVA 4C5SA 1Q92A 4CQ5A 4APBA 3OCFA 4L57A 1Z4MA 1T6JA 3KDZA 4WNLA 3R6QA 4BAAA
chains in the Genus database with same CATH topology
1U16A 3GTDA 1U15A 1I0AA 5F91A 4MX2A 1FUOA 1XWOA 2NYNA 5F92A 1FUPA 1YISA 1DCNA 2O7FA 1K7WA 1TJVA 4APAA 1Q5NA 1GK2A 1C3UA 1TJUA 1TJ7A 2PTSA 3RD8A 2X75A 2FUSA 2YIIA 4C5RA 1GKJA 3QBPA 3OCEA 2QVEA 2O7DA 3NO9A 4ADMA 1DOFA 4V2QA 1HY1A 2PFMA 3BHGA 3NZ4A 3RRPA 2PTRA 5HW2A 4C6GA 2O78A 1J3UA 4HGVA 2QGAB 1AUWA 2O6YA 1VDKA 1KQ7A 1RE5A 1T6PA 5EYTA 5EYVA 1JSWA 1YFEA 1FURA 1B8FA 4C5UA 4EEIA 1C3CA 1K62A 2OHYA 3CZOA 1EB4A 4V2RA 4FLCA 4NLEA 3C8TA 2O7BA 4NSLA 3UNVA 1TJWA 4BABA 1Y2MA 3KDYA 1GK3A 1FUQA 2RJRA 2HVGA 3GZHA 3R6YA 1HY0A 1GKMA 4ADLA 2E9FA 5D6BA 3R6VA 2PTQA 4FFXA 2VD6A 2RJSA 1YFMA 3E04A 2NYFA 2J91A 3TV2A 1W27A 4EFCA 2O7EA 4C5SA 4CQ5A 4APBA 3OCFA 1T6JA 3KDZA 3R6QA 4BAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U16 A;  3GTD A;  1U15 A;  1I0A A;  5F91 A;  4MX2 A;  1FUO A;  1XWO A;  2NYN A;  5F92 A;  1FUP A;  1YIS A;  1DCN A;  2O7F A;  1K7W A;  1TJV A;  4APA A;  1Q5N A;  1GK2 A;  1C3U A;  1TJU A;  1TJ7 A;  2PTS A;  3RD8 A;  2X75 A;  2FUS A;  2YII A;  4C5R A;  1GKJ A;  3QBP A;  3OCE A;  2QVE A;  2O7D A;  3NO9 A;  4ADM A;  1DOF A;  4V2Q A;  1HY1 A;  2PFM A;  3BHG A;  3NZ4 A;  3RRP A;  2PTR A;  5HW2 A;  4C6G A;  2O78 A;  1J3U A;  4HGV A;  2QGA B;  1AUW A;  2O6Y A;  1VDK A;  1KQ7 A;  1RE5 A;  1T6P A;  5EYT A;  5EYV A;  1JSW A;  1YFE A;  1FUR A;  1B8F A;  4C5U A;  4EEI A;  1C3C A;  1K62 A;  2OHY A;  3CZO A;  1EB4 A;  4V2R A;  4FLC A;  4NLE A;  3C8T A;  2O7B A;  4NSL A;  3UNV A;  1TJW A;  4BAB A;  1Y2M A;  3KDY A;  1GK3 A;  1FUQ A;  2RJR A;  2HVG A;  3GZH A;  3R6Y A;  1HY0 A;  1GKM A;  4ADL A;  2E9F A;  5D6B A;  3R6V A;  2PTQ A;  4FFX A;  2VD6 A;  2RJS A;  1YFM A;  3E04 A;  2NYF A;  2J91 A;  3TV2 A;  1W27 A;  4EFC A;  2O7E A;  4C5S A;  4CQ5 A;  4APB A;  3OCF A;  1T6J A;  3KDZ A;  3R6Q A;  4BAA A; 
#chains in the Genus database with same CATH topology
 1U16 A;  1Z4J A;  3GTD A;  1U15 A;  1I0A A;  5F91 A;  1Q91 A;  4MX2 A;  1XLY A;  4L6C A;  1FUO A;  1XWO A;  2NYN A;  3F4S A;  5F92 A;  1FUP A;  1YIS A;  1DCN A;  2O7F A;  1K7W A;  1TJV A;  1Z4I A;  4APA A;  1Q5N A;  2JAO A;  3CI0 K;  1GK2 A;  2D27 A;  1C3U A;  1TJU A;  1U0L A;  1TJ7 A;  2PTS A;  1MH9 A;  3U19 A;  3RD8 A;  2I7D A;  2JAW A;  2X75 A;  2FUS A;  2YII A;  5M0I A;  4C5R A;  4NFL A;  3F4T A;  1GKJ A;  3QBP A;  3OCE A;  2JAR A;  2QVE A;  2O7D A;  3NO9 A;  1XMC A;  4YIH A;  4ADM A;  1DOF A;  4V2Q A;  1HY1 A;  1Z4K A;  2PFM A;  3BHG A;  1Z4P X;  3RRP A;  3NZ4 A;  2PTR A;  5HW2 A;  2D28 C;  4C6G A;  2O78 A;  1J3U A;  1IW7 D;  4HGV A;  2QGA B;  1AUW A;  2O6Y A;  1VDK A;  1T9H A;  1KQ7 A;  1RE5 A;  2FEN A;  1T6P A;  5EYT A;  5EYV A;  3U13 A;  1JSW A;  1YFE A;  1XMD A;  4L6A A;  4IQJ M;  2FEL A;  4MUM A;  4E88 A;  1FUR A;  1B8F A;  4C5U A;  4EEI A;  1C3C A;  1K62 A;  2OHY A;  3CZO A;  1EB4 A;  2VSF A;  4V2R A;  4FLC A;  4MWO A;  4NLE A;  4YIK A;  3C8T A;  2O7B A;  4NSL A;  3UNV A;  1TJW A;  4BAB A;  1Y2M A;  3KDY A;  1GK3 A;  1Z4L A;  1FUQ A;  2RJR A;  2HVG A;  3GZH A;  3R6Y A;  2RCN A;  1HY0 A;  2JAU A;  1GKM A;  4ADL A;  3BWV A;  1Z4Q A;  2E9F A;  5D6B A;  3R6V A;  2PTQ A;  4FFX A;  1XL8 A;  5H8W A;  2VD6 A;  2RJS A;  5M0J A;  1YFM A;  3E04 A;  2NYF A;  2J91 A;  3TV2 A;  4A15 A;  1W27 A;  1XL7 A;  3F4R A;  4EFC A;  2O7E A;  3CRW 1;  2YV5 A;  2VL7 A;  3CRV A;  4C5S A;  1Q92 A;  4CQ5 A;  4APB A;  3OCF A;  4L57 A;  1Z4M A;  1T6J A;  3KDZ A;  4WNL A;  3R6Q A;  4BAA A; 
#chains in the Genus database with same CATH homology
 1U16 A;  3GTD A;  1U15 A;  1I0A A;  5F91 A;  4MX2 A;  1FUO A;  1XWO A;  2NYN A;  5F92 A;  1FUP A;  1YIS A;  1DCN A;  2O7F A;  1K7W A;  1TJV A;  4APA A;  1Q5N A;  1GK2 A;  1C3U A;  1TJU A;  1TJ7 A;  2PTS A;  3RD8 A;  2X75 A;  2FUS A;  2YII A;  4C5R A;  1GKJ A;  3QBP A;  3OCE A;  2QVE A;  2O7D A;  3NO9 A;  4ADM A;  1DOF A;  4V2Q A;  1HY1 A;  2PFM A;  3BHG A;  3NZ4 A;  3RRP A;  2PTR A;  5HW2 A;  4C6G A;  2O78 A;  1J3U A;  4HGV A;  2QGA B;  1AUW A;  2O6Y A;  1VDK A;  1KQ7 A;  1RE5 A;  1T6P A;  5EYT A;  5EYV A;  1JSW A;  1YFE A;  1FUR A;  1B8F A;  4C5U A;  4EEI A;  1C3C A;  1K62 A;  2OHY A;  3CZO A;  1EB4 A;  4V2R A;  4FLC A;  4NLE A;  3C8T A;  2O7B A;  4NSL A;  3UNV A;  1TJW A;  4BAB A;  1Y2M A;  3KDY A;  1GK3 A;  1FUQ A;  2RJR A;  2HVG A;  3GZH A;  3R6Y A;  1HY0 A;  1GKM A;  4ADL A;  2E9F A;  5D6B A;  3R6V A;  2PTQ A;  4FFX A;  2VD6 A;  2RJS A;  1YFM A;  3E04 A;  2NYF A;  2J91 A;  3TV2 A;  1W27 A;  4EFC A;  2O7E A;  4C5S A;  4CQ5 A;  4APB A;  3OCF A;  1T6J A;  3KDZ A;  3R6Q A;  4BAA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...