1YFMA

Recombinant yeast fumarase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
459
structure length
450
Chain Sequence
SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEIVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Saccharomyces cerevisiae
publication title Crystal structures of native and recombinant yeast fumarase.
pubmed doi rcsb
molecule keywords FUMARASE
total genus 151
structure length 450
sequence length 459
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 1998-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1yfmA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yfmA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yfmA02
1TJ7A 4EEIA 1TJWA 1TJVA 1Y2MA 3OCEA 4NLEA 4NSLA 2YIIA 1KQ7A 3R6VA 1K62A 3GZHA 2QVEA 1YISA 4EFCA 2X75A 2O7FA 1T6PA 1W27A 3KDZA 3NZ4A 5F92A 2PTRA 2FUSA 1JSWA 2E9FA 5D6BA 1FUPA 1Q5NA 3R6QA 1U16A 3C8TA 1U15A 1GKMA 2RJSA 5HW2A 1K7WA 4ADLA 1DOFA 1YFMA 4FLCA 4ADMA 3TV2A 3KDYA 1FUOA 1HY1A 1I0AA 4C5UA 1C3UA 5F91A 1XWOA 1AUWA 3CZOA 1T6JA 4C5RA 5EYTA 1FURA 2PTQA 4HGVA 5EYVA 4CQ5A 1B8FA 1DCNA 2O6YA 1HY0A 3UNVA 3RRPA 1FUQA 4C6GA 1GKJA 1YFEA 2VD6A 2OHYA 3QBPA 1GK2A 2PFMA 4BAAA 4V2RA 2J91A 4APAA 1TJUA 2PTSA 4V2QA 1GK3A 2HVGA 1VDKA 2NYFA 4APBA 1C3CA 1EB4A 3BHGA 4BABA 2RJRA 2O7EA 3E04A 2O7BA 4C5SA 1RE5A 3NO9A 3RD8A 2QGAB 2O7DA 4FFXA 1J3UA 3OCFA 4MX2A 2NYNA 3GTDA 2O78A 3R6YA
chains in the Genus database with same CATH superfamily
1TJ7A 1Z4PX 3F4TA 4EEIA 1TJWA 1TJVA 1Y2MA 5M0JA 5H8WA 3OCEA 4L6AA 4NLEA 1U0LA 4NSLA 2YIIA 1KQ7A 3R6VA 4MUMA 4L57A 1K62A 3GZHA 2QVEA 1YISA 4EFCA 2X75A 4E88A 2O7FA 2D27A 5M0IA 1T6PA 2FENA 2RCNA 1W27A 3KDZA 3NZ4A 5F92A 2PTRA 2FUSA 1JSWA 3U19A 2E9FA 5D6BA 1FUPA 2JAUA 1Q5NA 3R6QA 2FELA 4IQJM 2JARA 1U16A 3C8TA 1Z4QA 1U15A 1GKMA 2RJSA 5HW2A 1K7WA 4ADLA 1DOFA 1XLYA 1YFMA 2YV5A 4FLCA 4ADMA 1Z4KA 4A15A 1Q91A 3TV2A 3KDYA 1FUOA 1HY1A 1I0AA 3CRVA 4C5UA 1C3UA 3BWVA 5F91A 4MWOA 3U13A 1XWOA 1AUWA 3CZOA 1Z4IA 1T6JA 4C5RA 4YIKA 2VSFA 5EYTA 1FURA 2PTQA 4HGVA 1Q92A 5EYVA 4NFLA 4CQ5A 2D28C 1B8FA 3CRW1 1DCNA 2O6YA 1HY0A 2JAOA 4L6CA 3UNVA 3RRPA 1FUQA 1T9HA 1IW7D 4C6GA 1XL8A 1GKJA 1YFEA 2VD6A 2OHYA 1Z4LA 3QBPA 1GK2A 1MH9A 3F4RA 1XMCA 2PFMA 4BAAA 4V2RA 2J91A 4APAA 1TJUA 2PTSA 4V2QA 1GK3A 4YIHA 1Z4MA 2VL7A 2HVGA 1VDKA 2NYFA 4APBA 1C3CA 1EB4A 3BHGA 4BABA 1Z4JA 2RJRA 2O7EA 3E04A 2O7BA 3F4SA 4C5SA 1RE5A 3NO9A 3RD8A 2I7DA 2QGAB 2O7DA 4FFXA 1J3UA 3OCFA 4MX2A 2NYNA 4WNLA 3CI0K 3GTDA 2O78A 3R6YA 2JAWA 1XMDA 1XL7A
chains in the Genus database with same CATH topology
1TJ7A 4EEIA 1TJWA 1TJVA 1Y2MA 3OCEA 4NLEA 4NSLA 2YIIA 1KQ7A 3R6VA 1K62A 3GZHA 2QVEA 1YISA 4EFCA 2X75A 2O7FA 1T6PA 1W27A 3KDZA 3NZ4A 5F92A 2PTRA 2FUSA 1JSWA 2E9FA 5D6BA 1FUPA 1Q5NA 3R6QA 1U16A 3C8TA 1U15A 1GKMA 2RJSA 5HW2A 1K7WA 4ADLA 1DOFA 1YFMA 4FLCA 4ADMA 3TV2A 3KDYA 1FUOA 1HY1A 1I0AA 4C5UA 1C3UA 5F91A 1XWOA 1AUWA 3CZOA 1T6JA 4C5RA 5EYTA 1FURA 2PTQA 4HGVA 5EYVA 4CQ5A 1B8FA 1DCNA 2O6YA 1HY0A 3UNVA 3RRPA 1FUQA 4C6GA 1GKJA 1YFEA 2VD6A 2OHYA 3QBPA 1GK2A 2PFMA 4BAAA 4V2RA 2J91A 4APAA 1TJUA 2PTSA 4V2QA 1GK3A 2HVGA 1VDKA 2NYFA 4APBA 1C3CA 1EB4A 3BHGA 4BABA 2RJRA 2O7EA 3E04A 2O7BA 4C5SA 1RE5A 3NO9A 3RD8A 2QGAB 2O7DA 4FFXA 1J3UA 3OCFA 4MX2A 2NYNA 3GTDA 2O78A 3R6YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJ7 A;  4EEI A;  1TJW A;  1TJV A;  1Y2M A;  3OCE A;  4NLE A;  4NSL A;  2YII A;  1KQ7 A;  3R6V A;  1K62 A;  3GZH A;  2QVE A;  1YIS A;  4EFC A;  2X75 A;  2O7F A;  1T6P A;  1W27 A;  3KDZ A;  3NZ4 A;  5F92 A;  2PTR A;  2FUS A;  1JSW A;  2E9F A;  5D6B A;  1FUP A;  1Q5N A;  3R6Q A;  1U16 A;  3C8T A;  1U15 A;  1GKM A;  2RJS A;  5HW2 A;  1K7W A;  4ADL A;  1DOF A;  1YFM A;  4FLC A;  4ADM A;  3TV2 A;  3KDY A;  1FUO A;  1HY1 A;  1I0A A;  4C5U A;  1C3U A;  5F91 A;  1XWO A;  1AUW A;  3CZO A;  1T6J A;  4C5R A;  5EYT A;  1FUR A;  2PTQ A;  4HGV A;  5EYV A;  4CQ5 A;  1B8F A;  1DCN A;  2O6Y A;  1HY0 A;  3UNV A;  3RRP A;  1FUQ A;  4C6G A;  1GKJ A;  1YFE A;  2VD6 A;  2OHY A;  3QBP A;  1GK2 A;  2PFM A;  4BAA A;  4V2R A;  2J91 A;  4APA A;  1TJU A;  2PTS A;  4V2Q A;  1GK3 A;  2HVG A;  1VDK A;  2NYF A;  4APB A;  1C3C A;  1EB4 A;  3BHG A;  4BAB A;  2RJR A;  2O7E A;  3E04 A;  2O7B A;  4C5S A;  1RE5 A;  3NO9 A;  3RD8 A;  2QGA B;  2O7D A;  4FFX A;  1J3U A;  3OCF A;  4MX2 A;  2NYN A;  3GTD A;  2O78 A;  3R6Y A; 
#chains in the Genus database with same CATH topology
 1TJ7 A;  1Z4P X;  3F4T A;  4EEI A;  1TJW A;  1TJV A;  1Y2M A;  5M0J A;  5H8W A;  3OCE A;  4L6A A;  4NLE A;  1U0L A;  4NSL A;  2YII A;  1KQ7 A;  3R6V A;  4MUM A;  4L57 A;  1K62 A;  3GZH A;  2QVE A;  1YIS A;  4EFC A;  2X75 A;  4E88 A;  2O7F A;  2D27 A;  5M0I A;  1T6P A;  2FEN A;  2RCN A;  1W27 A;  3KDZ A;  3NZ4 A;  5F92 A;  2PTR A;  2FUS A;  1JSW A;  3U19 A;  2E9F A;  5D6B A;  1FUP A;  2JAU A;  1Q5N A;  3R6Q A;  2FEL A;  4IQJ M;  2JAR A;  1U16 A;  3C8T A;  1Z4Q A;  1U15 A;  1GKM A;  2RJS A;  5HW2 A;  1K7W A;  4ADL A;  1DOF A;  1XLY A;  1YFM A;  2YV5 A;  4FLC A;  4ADM A;  1Z4K A;  4A15 A;  1Q91 A;  3TV2 A;  3KDY A;  1FUO A;  1HY1 A;  1I0A A;  3CRV A;  4C5U A;  1C3U A;  3BWV A;  5F91 A;  4MWO A;  3U13 A;  1XWO A;  1AUW A;  3CZO A;  1Z4I A;  1T6J A;  4C5R A;  4YIK A;  2VSF A;  5EYT A;  1FUR A;  2PTQ A;  4HGV A;  1Q92 A;  5EYV A;  4NFL A;  4CQ5 A;  2D28 C;  1B8F A;  3CRW 1;  1DCN A;  2O6Y A;  1HY0 A;  2JAO A;  4L6C A;  3UNV A;  3RRP A;  1FUQ A;  1T9H A;  1IW7 D;  4C6G A;  1XL8 A;  1GKJ A;  1YFE A;  2VD6 A;  2OHY A;  1Z4L A;  3QBP A;  1GK2 A;  1MH9 A;  3F4R A;  1XMC A;  2PFM A;  4BAA A;  4V2R A;  2J91 A;  4APA A;  1TJU A;  2PTS A;  4V2Q A;  1GK3 A;  4YIH A;  1Z4M A;  2VL7 A;  2HVG A;  1VDK A;  2NYF A;  4APB A;  1C3C A;  1EB4 A;  3BHG A;  4BAB A;  1Z4J A;  2RJR A;  2O7E A;  3E04 A;  2O7B A;  3F4S A;  4C5S A;  1RE5 A;  3NO9 A;  3RD8 A;  2I7D A;  2QGA B;  2O7D A;  4FFX A;  1J3U A;  3OCF A;  4MX2 A;  2NYN A;  4WNL A;  3CI0 K;  3GTD A;  2O78 A;  3R6Y A;  2JAW A;  1XMD A;  1XL7 A; 
#chains in the Genus database with same CATH homology
 1TJ7 A;  4EEI A;  1TJW A;  1TJV A;  1Y2M A;  3OCE A;  4NLE A;  4NSL A;  2YII A;  1KQ7 A;  3R6V A;  1K62 A;  3GZH A;  2QVE A;  1YIS A;  4EFC A;  2X75 A;  2O7F A;  1T6P A;  1W27 A;  3KDZ A;  3NZ4 A;  5F92 A;  2PTR A;  2FUS A;  1JSW A;  2E9F A;  5D6B A;  1FUP A;  1Q5N A;  3R6Q A;  1U16 A;  3C8T A;  1U15 A;  1GKM A;  2RJS A;  5HW2 A;  1K7W A;  4ADL A;  1DOF A;  1YFM A;  4FLC A;  4ADM A;  3TV2 A;  3KDY A;  1FUO A;  1HY1 A;  1I0A A;  4C5U A;  1C3U A;  5F91 A;  1XWO A;  1AUW A;  3CZO A;  1T6J A;  4C5R A;  5EYT A;  1FUR A;  2PTQ A;  4HGV A;  5EYV A;  4CQ5 A;  1B8F A;  1DCN A;  2O6Y A;  1HY0 A;  3UNV A;  3RRP A;  1FUQ A;  4C6G A;  1GKJ A;  1YFE A;  2VD6 A;  2OHY A;  3QBP A;  1GK2 A;  2PFM A;  4BAA A;  4V2R A;  2J91 A;  4APA A;  1TJU A;  2PTS A;  4V2Q A;  1GK3 A;  2HVG A;  1VDK A;  2NYF A;  4APB A;  1C3C A;  1EB4 A;  3BHG A;  4BAB A;  2RJR A;  2O7E A;  3E04 A;  2O7B A;  4C5S A;  1RE5 A;  3NO9 A;  3RD8 A;  2QGA B;  2O7D A;  4FFX A;  1J3U A;  3OCF A;  4MX2 A;  2NYN A;  3GTD A;  2O78 A;  3R6Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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