1YHQE

Crystal structure of azithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2005-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1yhqE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1yhqE01
3I55E 3OW2E 1YJ9E 5JVHE 2OTLE 1VQ6E 1RL6A 2ZJPE 1KQSE 4UY8G 5AN9B 5GAEG 1M90G 3CMEE 1KC8G 1QVFE 3CCUE 3CCRE 3I56E 3CCVE 5H1SI 1VQME 1VQ7E 1Q81G 3DLLE 4IOAE 3G6EE 5HL7E 3CCQE 3CC2E 3G4SE 4WFBE 3CCJE 1W2BE 3CC7E 5DM6E 1YJNE 1YHQE 1VQNE 3CCEE 3CXCE 1NJIG 1YIJE 4WFAE 1S72E 2CQLA 3CMAE 1QVGE 3CD6E 5GAGG 1K9MG 1VQ4E 1KD1G 1Q82G 1M1KG 1YJWE 4U67E 4IO9E 5DM7E 5MLCH 1VQ8E 5JVGE 3J7ZG 1VQ9E 3CF5E 2QA4E 1VQOE 3CCSE 4IOCE 1VQLE 2ZJQE 1YITE 3CCLE 4WFNE 1VQ5E 3CCME 3PIOE 1VQPE 1K73G 1Q86G 2OTJE 1YI2E 2QEXE 4WCEE 1N8RG 2ZJRE 3CPWE 3CC4E 1VQKE 5GAHG 1K8AG 5GADG 1JJ2E 3PIPE 1Q7YG 4WF9E 3G71E
chains in the Genus database with same CATH superfamily
3I55E 3OW2E 1FJ1E 1YJ9E 5JVHE 2OTLE 1VQ6E 1RL6A 1RJLC 2ZJPE 1KQSE 4UY8G 5AN9B 5GAEG 5B2AO 2OYBO 1M90G 3CMEE 1KC8G 1QVFE 2I5ZO 3CCUE 3CCRE 3IGEA 3I56E 3CCVE 5H1SI 1VQME 1VQ7E 1Q81G 1OSPO 3DLLE 4IOAE 3CKFA 3G6EE 5HL7E 3CCQE 3CC2E 3G4SE 4WFBE 3CCJE 1P4PA 1W2BE 3CC7E 5DM6E 3AUMO 1YJNE 1YHQE 3CKGA 3EC5A 1VQNE 3CCEE 2OY1O 2FKGA 3CXCE 2OL8O 1NJIG 1YIJE 4WFAE 1S72E 2CQLA 3CMAE 5B10O 1QVGE 3CD6E 5GAGG 1K9MG 2FKJA 1VQ4E 1KD1G 2OL7A 1Q82G 1M1KG 1YJWE 4U67E 4IO9E 5DM7E 5MLCH 1VQ8E 5B3MO 5JVGE 2G8CO 3J7ZG 1VQ9E 3CF5E 2HKDA 2QA4E 1VQOE 2OL6O 5B11O 3CCSE 4IOCE 1VQLE 2ZJQE 1YITE 3CCLE 4WFNE 2OY5O 2OY7A 1VQ5E 3CCME 3PIOE 3IG9A 1VQPE 1K73G 1Q86G 2OTJE 1YI2E 2QEXE 4WCEE 1N8RG 2ZJRE 2I5VO 3CPWE 3CC4E 1VQKE 5GAHG 1K8AG 2OY8A 5GADG 1JJ2E 3PIPE 1Q7YG 4WF9E 3G71E 2PI3O 2AF5A
chains in the Genus database with same CATH topology
3I55E 3OW2E 1YJ9E 5JVHE 2OTLE 1VQ6E 1RL6A 2ZJPE 1KQSE 4UY8G 5AN9B 5GAEG 1M90G 3CMEE 1KC8G 1QVFE 3CCUE 3CCRE 3I56E 3CCVE 5H1SI 1VQME 1VQ7E 1Q81G 3DLLE 4IOAE 3G6EE 5HL7E 3CCQE 3CC2E 3G4SE 4WFBE 3CCJE 1W2BE 3CC7E 5DM6E 1YJNE 1YHQE 1VQNE 3CCEE 3CXCE 1NJIG 1YIJE 4WFAE 1S72E 2CQLA 3CMAE 1QVGE 3CD6E 5GAGG 1K9MG 1VQ4E 1KD1G 1Q82G 1M1KG 1YJWE 4U67E 4IO9E 5DM7E 5MLCH 1VQ8E 5JVGE 3J7ZG 1VQ9E 3CF5E 2QA4E 1VQOE 3CCSE 4IOCE 1VQLE 2ZJQE 1YITE 3CCLE 4WFNE 1VQ5E 3CCME 3PIOE 1VQPE 1K73G 1Q86G 2OTJE 1YI2E 2QEXE 4WCEE 1N8RG 2ZJRE 3CPWE 3CC4E 1VQKE 5GAHG 1K8AG 5GADG 1JJ2E 3PIPE 1Q7YG 4WF9E 3G71E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I55 E;  3OW2 E;  1YJ9 E;  5JVH E;  2OTL E;  1VQ6 E;  1RL6 A;  2ZJP E;  1KQS E;  4UY8 G;  5AN9 B;  5GAE G;  1M90 G;  3CME E;  1KC8 G;  1QVF E;  3CCU E;  3CCR E;  3I56 E;  3CCV E;  5H1S I;  1VQM E;  1VQ7 E;  1Q81 G;  3DLL E;  4IOA E;  3G6E E;  5HL7 E;  3CCQ E;  3CC2 E;  3G4S E;  4WFB E;  3CCJ E;  1W2B E;  3CC7 E;  5DM6 E;  1YJN E;  1YHQ E;  1VQN E;  3CCE E;  3CXC E;  1NJI G;  1YIJ E;  4WFA E;  1S72 E;  2CQL A;  3CMA E;  1QVG E;  3CD6 E;  5GAG G;  1K9M G;  1VQ4 E;  1KD1 G;  1Q82 G;  1M1K G;  1YJW E;  4U67 E;  4IO9 E;  5DM7 E;  5MLC H;  1VQ8 E;  5JVG E;  3J7Z G;  1VQ9 E;  3CF5 E;  2QA4 E;  1VQO E;  3CCS E;  4IOC E;  1VQL E;  2ZJQ E;  1YIT E;  3CCL E;  4WFN E;  1VQ5 E;  3CCM E;  3PIO E;  1VQP E;  1K73 G;  1Q86 G;  2OTJ E;  1YI2 E;  2QEX E;  4WCE E;  1N8R G;  2ZJR E;  3CPW E;  3CC4 E;  1VQK E;  5GAH G;  1K8A G;  5GAD G;  1JJ2 E;  3PIP E;  1Q7Y G;  4WF9 E;  3G71 E; 
#chains in the Genus database with same CATH topology
 3I55 E;  3OW2 E;  1FJ1 E;  1YJ9 E;  5JVH E;  2OTL E;  1VQ6 E;  1RL6 A;  1RJL C;  2ZJP E;  1KQS E;  4UY8 G;  5AN9 B;  5GAE G;  5B2A O;  2OYB O;  1M90 G;  3CME E;  1KC8 G;  1QVF E;  2I5Z O;  3CCU E;  3CCR E;  3IGE A;  3I56 E;  3CCV E;  5H1S I;  1VQM E;  1VQ7 E;  1Q81 G;  1OSP O;  3DLL E;  4IOA E;  3CKF A;  3G6E E;  5HL7 E;  3CCQ E;  3CC2 E;  3G4S E;  4WFB E;  3CCJ E;  1P4P A;  1W2B E;  3CC7 E;  5DM6 E;  3AUM O;  1YJN E;  1YHQ E;  3CKG A;  3EC5 A;  1VQN E;  3CCE E;  2OY1 O;  2FKG A;  3CXC E;  2OL8 O;  1NJI G;  1YIJ E;  4WFA E;  1S72 E;  2CQL A;  3CMA E;  5B10 O;  1QVG E;  3CD6 E;  5GAG G;  1K9M G;  2FKJ A;  1VQ4 E;  1KD1 G;  2OL7 A;  1Q82 G;  1M1K G;  1YJW E;  4U67 E;  4IO9 E;  5DM7 E;  5MLC H;  1VQ8 E;  5B3M O;  5JVG E;  2G8C O;  3J7Z G;  1VQ9 E;  3CF5 E;  2HKD A;  2QA4 E;  1VQO E;  2OL6 O;  5B11 O;  3CCS E;  4IOC E;  1VQL E;  2ZJQ E;  1YIT E;  3CCL E;  4WFN E;  2OY5 O;  2OY7 A;  1VQ5 E;  3CCM E;  3PIO E;  3IG9 A;  1VQP E;  1K73 G;  1Q86 G;  2OTJ E;  1YI2 E;  2QEX E;  4WCE E;  1N8R G;  2ZJR E;  2I5V O;  3CPW E;  3CC4 E;  1VQK E;  5GAH G;  1K8A G;  2OY8 A;  5GAD G;  1JJ2 E;  3PIP E;  1Q7Y G;  4WF9 E;  3G71 E;  2PI3 O;  2AF5 A; 
#chains in the Genus database with same CATH homology
 3I55 E;  3OW2 E;  1YJ9 E;  5JVH E;  2OTL E;  1VQ6 E;  1RL6 A;  2ZJP E;  1KQS E;  4UY8 G;  5AN9 B;  5GAE G;  1M90 G;  3CME E;  1KC8 G;  1QVF E;  3CCU E;  3CCR E;  3I56 E;  3CCV E;  5H1S I;  1VQM E;  1VQ7 E;  1Q81 G;  3DLL E;  4IOA E;  3G6E E;  5HL7 E;  3CCQ E;  3CC2 E;  3G4S E;  4WFB E;  3CCJ E;  1W2B E;  3CC7 E;  5DM6 E;  1YJN E;  1YHQ E;  1VQN E;  3CCE E;  3CXC E;  1NJI G;  1YIJ E;  4WFA E;  1S72 E;  2CQL A;  3CMA E;  1QVG E;  3CD6 E;  5GAG G;  1K9M G;  1VQ4 E;  1KD1 G;  1Q82 G;  1M1K G;  1YJW E;  4U67 E;  4IO9 E;  5DM7 E;  5MLC H;  1VQ8 E;  5JVG E;  3J7Z G;  1VQ9 E;  3CF5 E;  2QA4 E;  1VQO E;  3CCS E;  4IOC E;  1VQL E;  2ZJQ E;  1YIT E;  3CCL E;  4WFN E;  1VQ5 E;  3CCM E;  3PIO E;  1VQP E;  1K73 G;  1Q86 G;  2OTJ E;  1YI2 E;  2QEX E;  4WCE E;  1N8R G;  2ZJR E;  3CPW E;  3CC4 E;  1VQK E;  5GAH G;  1K8A G;  5GAD G;  1JJ2 E;  3PIP E;  1Q7Y G;  4WF9 E;  3G71 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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